evm.TU.supercontig_90.16 (Carica papaya)
HSF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00447 (HSF_DNA-bind) IPR000232 evm.TU.supercontig_90.16 T243149_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
HSFA1E
M06939_2.00 		Arabidopsis thaliana
RGAANNTTCTAGA
TCTAGAANNTTCY		 Dap-seq
OMalley et al.(2016)
HSFA1E_col_a 		0.527 0.851
HSFA1E
M06940_2.00 		Arabidopsis thaliana
RGAASNTTCTAGAAN
NTTCTAGAANSTTCY		 Dap-seq
OMalley et al.(2016)
HSFA1E_colamp_a 		0.527 0.851
HSFA1B
M06948_2.00 		Arabidopsis thaliana
GAANNTTCTAGA
TCTAGAANNTTC		 Dap-seq
OMalley et al.(2016)
HSF3_col_a 		0.503 0.839
HSFA1B
M06949_2.00 		Arabidopsis thaliana
TTCYRG
CYRGAA		 Dap-seq
OMalley et al.(2016)
HSF3_colamp_a 		0.503 0.839
HSFA4A
M06947_2.00 		Arabidopsis thaliana
NNNRGAABBTTCTAGAANN
NNTTCTAGAAVVTTCYNNN		 Dap-seq
OMalley et al.(2016)
HSF21_col_a 		0.501 0.736
HSFA6B
M06941_2.00 		Arabidopsis thaliana
RGAASNTTCTAGA
TCTAGAANSTTCY		 Dap-seq
OMalley et al.(2016)
HSFA6B_colamp_a 		0.491 0.759
HSFA6B
M06942_2.00 		Arabidopsis thaliana
RGAABNTTCTRGAAN
NTTCYAGAANVTTCY		 Dap-seq
OMalley et al.(2016)
HSFA6B_col 		0.491 0.759
HSFB4
M06936_2.00 		Arabidopsis thaliana
RGAASNTTCTAGAAN
NTTCTAGAANSTTCY		 Dap-seq
OMalley et al.(2016)
HSFB4_col_a 		0.479 0.747
HSFA6A
M06950_2.00 		Arabidopsis thaliana
GAASNTTCTAGAANNW
WNNTTCTAGAANSTTC		 Dap-seq
OMalley et al.(2016)
HSFA6A_col_a 		0.443 0.678
HSFA6A
M06951_2.00 		Arabidopsis thaliana
GAASNTTCTAGAA
TTCTAGAANSTTC		 Dap-seq
OMalley et al.(2016)
HSFA6A_colamp_a 		0.443 0.678
HSFB2A
M00869_2.00 		Arabidopsis thaliana
NNNNNTTCB
VGAANNNNN		 PBM
Franco-Zorrilla et al.(2014)
HSFB2A 		0.433 0.678
HSFB2A
M06952_2.00 		Arabidopsis thaliana
GAANNTTCYAGA
TCTRGAANNTTC		 Dap-seq
OMalley et al.(2016)
HSF6_col_a 		0.433 0.678
HSFB2B
M06945_2.00 		Arabidopsis thaliana
RGAANNTTCTAGAA
TTCTAGAANNTTCY		 Dap-seq
OMalley et al.(2016)
HSF7_col_a 		0.431 0.701
HSFB2B
M06946_2.00 		Arabidopsis thaliana
RGAANNTTCTAGAA
TTCTAGAANNTTCY		 Dap-seq
OMalley et al.(2016)
HSF7_colamp_a 		0.431 0.701
HSFC1
M00868_2.00 		Arabidopsis thaliana
NDTCBNNN
NNNVGAHN		 PBM
Franco-Zorrilla et al.(2014)
HSFC1 		0.418 0.690
HSFC1
M06943_2.00 		Arabidopsis thaliana
GAASNTTCTAG
CTAGAANSTTC		 Dap-seq
OMalley et al.(2016)
HSFC1_col_a 		0.418 0.690
HSFC1
M06944_2.00 		Arabidopsis thaliana
RGAASNTTCTAGAANVW
WBNTTCTAGAANSTTCY		 Dap-seq
OMalley et al.(2016)
HSFC1_colamp_a 		0.418 0.690
HSFB3
M06937_2.00 		Arabidopsis thaliana
RRAANMWTCTAGAAV
BTTCTAGAWKNTTYY		 Dap-seq
OMalley et al.(2016)
HSFB3_col_a 		0.397 0.655
HSFB3
M06938_2.00 		Arabidopsis thaliana
AABSTTCTAGAAN
NTTCTAGAASVTT		 Dap-seq
OMalley et al.(2016)
HSFB3_colamp_a 		0.397 0.655
For this family, TFs with SR scores > 0.318 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
evm.model.supercontig_90.16 HSF 41 131

Links

Other HSF family TFs
Other Carica papaya TFs

1498 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AT3G10030 Arabidopsis thaliana AT3G10030 D
Bostr.22252s0062 Boechera stricta Bostr.22252s0062 I
Traes_2AL_246006E77 Triticum aestivum Traes_2AL_246006E77 I
Aquca_019_00072 Aquilegia coerulea Aquca_019_00072 I
Aquca_009_01006 Aquilegia coerulea Aquca_009_01006 I
mgf008067m Mimulus guttatus mgf008067m I
Cucsa.378670 Cucumis sativus Cucsa.378670 I
cassava30771.valid.m1 Manihot esculenta cassava30771.valid.m1 I
29815.m000504 Ricinus communis 29815.m000504 I
28077.m000081 Ricinus communis 28077.m000081 I
Pm026265 Prunus mume Pm026265 I
Cla018015 Citrullus lanatus Cla018015 I
Ca_20148 Cicer arietinum Ca_20148 I
VIT_13s0074g00240 Vitis vinifera VIT_13s0074g00240 I
VIT_08s0007g04160 Vitis vinifera VIT_08s0007g04160 I
Traes_2BL_83EDE2CBB Triticum aestivum Traes_2BL_83EDE2CBB I
Thhalv10020471m.g Eutrema salsugineum Thhalv10020471m.g I
Cagra.4686s0014 Capsella grandiflora Cagra.4686s0014 I
Carubv10015256m.g Capsella rubella Carubv10015256m.g I
Ciclev10011433m.g Citrus clementina Ciclev10011433m.g I
Eucgr.A01571 Eucalyptus grandis Eucgr.A01571 I
evm.TU.supercontig_128.55 Carica papaya evm.TU.supercontig_128.55 I
gene30101-v1.0-hybrid Fragaria vesca gene30101-v1.0-hybrid I
Gorai.007G371500 Gossypium raimondii Gorai.007G371500 I
MDP0000201016 Malus domestica MDP0000201016 I
MDP0000399495 Malus domestica MDP0000399495 I
MDP0000415733 Malus domestica MDP0000415733 I
Pavir.Gb01778 Panicum virgatum Pavir.Gb01778 I
Pavir.J13370 Panicum virgatum Pavir.J13370 I
SapurV1A.0226s0070 Salix purpurea SapurV1A.0226s0070 I
SapurV1A.0243s0300 Salix purpurea SapurV1A.0243s0300 I
SapurV1A.0439s0120 Salix purpurea SapurV1A.0439s0120 I
AMTR_s00006p00265300 Amborella trichopoda AMTR_s00006p00265300 I
OB04G18670 Oryza brachyantha OB04G18670 I
BGIOSGA016339 Oryza indica BGIOSGA016339 I
Bo5g137800 Brassica oleracea Bo5g137800 I
Bra029812 Brassica rapa Bra029812 I
BRADI5G08980 Brachypodium distachyon BRADI5G08980 I
F775_31501 Aegilops tauschii F775_31501 I
fgenesh1_pm.C_scaffold_3000820 Arabidopsis lyrata fgenesh1_pm.C_scaffold_3000820 I
GLYMA10G07490 Glycine max GLYMA10G07490 I
GLYMA10G34520 Glycine max GLYMA10G34520 I
GLYMA13G21371 Glycine max GLYMA13G21371 I
GRMZM2G002978 Zea mays GRMZM2G002978 I
GSMUA_Achr2G20220_001 Musa acuminata GSMUA_Achr2G20220_001 I
GSMUA_Achr6G13420_001 Musa acuminata GSMUA_Achr6G13420_001 I
LPERR04G08300 Leersia perrieri LPERR04G08300 I
MLOC_28975 Hordeum vulgare MLOC_28975 I
MTR_1g061600 Medicago truncatula MTR_1g061600 I
TCM_043551 Theobroma cacao TCM_043551 I
OGLUM04G11230 Oryza glumaepatula OGLUM04G11230 I
OMERI04G10080 Oryza meridionalis OMERI04G10080 I
ONIVA04G09510 Oryza nivara ONIVA04G09510 I
OPUNC04G09570 Oryza punctata OPUNC04G09570 I
PGSC0003DMG400002727 Solanum tuberosum PGSC0003DMG400002727 I
POPTR_0006s11850 Populus trichocarpa POPTR_0006s11850 I
POPTR_0008s02730 Populus trichocarpa POPTR_0008s02730 I
POPTR_0010s23970 Populus trichocarpa POPTR_0010s23970 I
PRUPE_ppa004154mg Prunus persica PRUPE_ppa004154mg I
PRUPE_ppa022998mg Prunus persica PRUPE_ppa022998mg I
Sb06g015280 Sorghum bicolor Sb06g015280 I
Si009787m.g Setaria italica Si009787m.g I
Solyc09g008850.2 Solanum lycopersicum Solyc09g008850.2 I
TCM_022397 Theobroma cacao TCM_022397 I