ENSLOCG00000015563 (Lepisosteus oculatus)
IRF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00605 (IRF) IPR001346 ENSLOCG00000015563 T244157_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
IRF6
M02254_2.00 		Meleagris gallopavo
NRNCGAWACY
RGTWTCGNYN		 PBM
Weirauch et al.(2014)
pTH9210 		0.790 0.790
irf6.2
M02259_2.00 		Xenopus tropicalis
NVNHGAWACH
DGTWTCDNBN		 PBM
Weirauch et al.(2014)
pTH9302 		0.790 0.790
IRF6
M02253_2.00 		Gallus gallus
NNMCNAAWNN
NNWTTNGKNN		 PBM
Weirauch et al.(2014)
pTH9178 		0.781 0.781
irf5.L
M02260_2.00 		Xenopus laevis
VNCGADACHN
NDGTHTCGNB		 PBM
Weirauch et al.(2014)
pTH9367 		0.771 0.771
Irf6
M00176_2.00 		Mus musculus
NNNHGADASN
NSTHTCDNNN		 PBM
Badis et al.(2009)
Irf6_3803 		0.762 0.762
IRF6
M05527_2.00 		Homo sapiens
RGTWTCGNNNNNNYGAWACY
RGTWTCRNNNNNNCGAWACY		 SELEX
Yin et al.(2017)
IRF6_eDBD_HT-SELEX 		0.762 0.762
IRF6
M05529_2.00 		Homo sapiens
ACCGAAACT
AGTTTCGGT		 SELEX
Yin et al.(2017)
IRF6_FL_HT-SELEX 		0.762 0.762
IRF6
M05528_2.00 		Homo sapiens
RGTWTCGNHNNDNYGAWACY
RGTWTCRNHNNDNCGAWACY		 SELEX
Yin et al.(2017)
IRF6_eDBD_Methyl-HT-SELEX 		0.762 0.762
IRF6
M05530_2.00 		Homo sapiens
ACCGAWACY
RGTWTCGGT		 SELEX
Yin et al.(2017)
IRF6_FL_Methyl-HT-SELEX 		0.762 0.762
Irf5
M00177_2.00 		Mus musculus
NNNHGADASH
DSTHTCDNNN		 PBM
Badis et al.(2009)
Irf5_3874 		0.733 0.733
IRF5
M03332_2.00 		Homo sapiens
YCGAAACCGAAMCY
RGKTTCGGTTTCGR		 SELEX
Jolma et al.(2013)
IRF5_1 		0.733 0.733
IRF5
M03333_2.00 		Homo sapiens
HACCGAAACYV
BRGTTTCGGTD		 SELEX
Jolma et al.(2013)
IRF5_2 		0.733 0.733
IRF5
M05535_2.00 		Homo sapiens
NCGAAACCGAWACH
DGTWTCGGTTTCGN		 SELEX
Yin et al.(2017)
IRF5_eDBD_HT-SELEX 		0.733 0.733
IRF5
M05537_2.00 		Homo sapiens
NCGAAACCGAAACY
RGTTTCGGTTTCGN		 SELEX
Yin et al.(2017)
IRF5_FL_HT-SELEX 		0.733 0.733
IRF5
M10884_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$IRF5_Q3 		0.733 0.733
IRF5
M05536_2.00 		Homo sapiens
NYGAWACYGAWACH
DGTWTCRGTWTCRN		 SELEX
Yin et al.(2017)
IRF5_eDBD_Methyl-HT-SELEX 		0.733 0.733
IRF5
M05538_2.00 		Homo sapiens
NYGAAACCGAWACY
RGTWTCGGTTTCRN		 SELEX
Yin et al.(2017)
IRF5_FL_Methyl-HT-SELEX 		0.733 0.733
IRF5
M02256_2.00 		Oryctolagus cuniculus
NHCGAAACYN
NRGTTTCGDN		 PBM
Weirauch et al.(2014)
pTH9272 		0.714 0.714
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSLOCP00000019155 IRF 2 107

Links

Other IRF family TFs
Other Lepisosteus oculatus TFs

125 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Aquca_027_00443 Aquilegia coerulea Aquca_027_00443 I
PK09783.1 Cannabis sativa PK09783.1 I
Thhalv10009681m.g Eutrema salsugineum Thhalv10009681m.g I
SapurV1A.0208s0130 Salix purpurea SapurV1A.0208s0130 I
orange1.1g011345m.g Citrus sinensis orange1.1g011345m.g I
MDP0000203904 Malus domestica MDP0000203904 I
MDP0000147745 Malus domestica MDP0000147745 I
Lus10035597.g Linum usitatissimum Lus10035597.g I
Lus10003255.g Linum usitatissimum Lus10003255.g I
Gorai.009G405400 Gossypium raimondii Gorai.009G405400 I
gene30252-v1.0-hybrid Fragaria vesca gene30252-v1.0-hybrid I
evm.TU.supercontig_5.51 Carica papaya evm.TU.supercontig_5.51 I
Ciclev10013541m.g Citrus clementina Ciclev10013541m.g I
Carubv10011417m.g Capsella rubella Carubv10011417m.g I
Cagra.1961s0053 Capsella grandiflora Cagra.1961s0053 I
Bostr.7128s0552 Boechera stricta Bostr.7128s0552 I
Bo5g027510 Brassica oleracea Bo5g027510 I
Cucsa.240980 Cucumis sativus Cucsa.240980 I
cassava31755.valid.m1 Manihot esculenta cassava31755.valid.m1 I
28779.m000140 Ricinus communis 28779.m000140 I
Cla017983 Citrullus lanatus Cla017983 I
Ca_00780 Cicer arietinum Ca_00780 I
VIT_08s0007g03640 Vitis vinifera VIT_08s0007g03640 I
TCM_022516 Theobroma cacao TCM_022516 I
Solyc09g009760.1 Solanum lycopersicum Solyc09g009760.1 I
PRUPE_ppa003901mg Prunus persica PRUPE_ppa003901mg I
POPTR_0006s11550 Populus trichocarpa POPTR_0006s11550 I
MTR_7g104190 Medicago truncatula MTR_7g104190 I
GLYMA19G37801 Glycine max GLYMA19G37801 I
GLYMA03G35101 Glycine max GLYMA03G35101 I
Bra025743 Brassica rapa Bra025743 I