PDK_20s1376911g004 (Phoenix dactylifera)
LOB

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03195 (DUF260) IPR004883 PDK_20s1376911g004 T247458_2.00 Superfamily (2010-Oct-26)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
LBD4
M02261_2.00 		Arabidopsis thaliana
VDNVCGSNNN
NNNSCGBNHB		 PBM
Weirauch et al.(2014)
pTH7515 		0.722 0.722
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
PDK_20s1376911g004 LOB 48 101

Links

Other LOB family TFs
Other Phoenix dactylifera TFs

132 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
LBD4 Arabidopsis thaliana AT1G31320 D 0.722
AMTR_s00032p00142260 Amborella trichopoda AMTR_s00032p00142260 I 0.704
BGIOSGA018905 Oryza indica BGIOSGA018905 I 0.807
BRADI4G44850 Brachypodium distachyon BRADI4G44850 I 0.722
LBD4 Arabidopsis lyrata fgenesh1_pm.C_scaffold_1002773 I 0.722
GLYMA07G35000 Glycine max GLYMA07G35000 I 0.722
GLYMA08G17990 Glycine max GLYMA08G17990 I 0.741
GLYMA11G29450 Glycine max GLYMA11G29450 I 0.704
GLYMA12G07650 Glycine max GLYMA12G07650 I 0.852
GLYMA15G13410 Glycine max GLYMA15G13410 I 0.722
GLYMA18G02780 Glycine max GLYMA18G02780 I 0.704
GLYMA20G02850 Glycine max GLYMA20G02850 I 0.741
GRMZM2G044150 Zea mays GRMZM2G044150 I 0.704
MTR_1g095850 Medicago truncatula MTR_1g095850 I 0.870
MTR_3g071590 Medicago truncatula MTR_3g071590 I 0.722
MTR_4g060950 Medicago truncatula MTR_4g060950 I 0.815
MTR_4g083680 Medicago truncatula MTR_4g083680 I 0.741
MTR_5g083230 Medicago truncatula MTR_5g083230 I 0.722
ONIVA05G01850 Oryza nivara ONIVA05G01850 I 0.852
ORUFI05G01750 Oryza rufipogon ORUFI05G01750 I 0.807
OS05G0123000 Oryza sativa OS05G0123000 I 0.807
PGSC0003DMG400025400 Solanum tuberosum PGSC0003DMG400025400 I 0.897
POPTR_0005s10050 Populus trichocarpa POPTR_0005s10050 I 0.750
POPTR_0007s08290 Populus trichocarpa POPTR_0007s08290 I 0.741
POPTR_0008s04350 Populus trichocarpa POPTR_0008s04350 I 0.852
POPTR_0008s07280 Populus trichocarpa POPTR_0008s07280 I 0.722
POPTR_0010s19180 Populus trichocarpa POPTR_0010s19180 I 0.722
POPTR_0010s22470 Populus trichocarpa POPTR_0010s22470 I 0.870
PRUPE_ppa011528mg Prunus persica PRUPE_ppa011528mg I 0.870
PRUPE_ppa012253mg Prunus persica PRUPE_ppa012253mg I 0.722
PRUPE_ppa012322mg Prunus persica PRUPE_ppa012322mg I 0.722
Sb09g002190 Sorghum bicolor Sb09g002190 I 0.833
Sb09g016240 Sorghum bicolor Sb09g016240 I 0.704
Si011647m.g Setaria italica Si011647m.g I 0.704
Si024229m.g Setaria italica Si024229m.g I 0.704
Solyc06g005090.2 Solanum lycopersicum Solyc06g005090.2 I 0.852
Solyc11g045530.1 Solanum lycopersicum Solyc11g045530.1 I 0.722
TCM_042212 Theobroma cacao TCM_042212 I 0.704
TCM_042447 Theobroma cacao TCM_042447 I 0.722
LBD4 Vitis vinifera VIT_00s0125g00290 I 0.704
VIT_06s0004g03350 Vitis vinifera VIT_06s0004g03350 I 0.852
VIT_13s0019g03700 Vitis vinifera VIT_13s0019g03700 I 0.907
VIT_13s0067g01880 Vitis vinifera VIT_13s0067g01880 I 0.722
LBD3 Vitis vinifera VIT_19s0027g01120 I 0.704
Ca_04287 Cicer arietinum Ca_04287 I 0.870
Ca_13388 Cicer arietinum Ca_13388 I 0.704
Cla000556 Citrullus lanatus Cla000556 I 0.852
Pm010668 Prunus mume Pm010668 I 0.722
Pm011040 Prunus mume Pm011040 I 0.722
Pm018585 Prunus mume Pm018585 I 0.833
30169.m006340 Ricinus communis 30169.m006340 I 0.722
cassava11218.m1 Manihot esculenta cassava11218.m1 I 0.870
cassava40961.m1 Manihot esculenta cassava40961.m1 I 0.907
cassava819.valid.m1 Manihot esculenta cassava819.valid.m1 I 0.870
Cucsa.052720 Cucumis sativus Cucsa.052720 I 0.833
Cucsa.239660 Cucumis sativus Cucsa.239660 I 0.741
mgf018189m Mimulus guttatus mgf018189m I 0.704
mgf022958m Mimulus guttatus mgf022958m I 0.722
Aquca_118_00035 Aquilegia coerulea Aquca_118_00035 I 0.722
Cagra.1508s0061 Capsella grandiflora Cagra.1508s0061 I 0.722
Carubv10010462m.g Capsella rubella Carubv10010462m.g I 0.722
Ciclev10006113m.g Citrus clementina Ciclev10006113m.g I 0.741
Ciclev10016993m.g Citrus clementina Ciclev10016993m.g I 0.704
Ciclev10029962m.g Citrus clementina Ciclev10029962m.g I 0.722
Ciclev10032929m.g Citrus clementina Ciclev10032929m.g I 0.704
Eucgr.B03991 Eucalyptus grandis Eucgr.B03991 I 0.704
evm.TU.supercontig_2.374 Carica papaya evm.TU.supercontig_2.374 I 0.704
gene20083-v1.0-hybrid Fragaria vesca gene20083-v1.0-hybrid I 0.722
gene21039-v1.0-hybrid Fragaria vesca gene21039-v1.0-hybrid I 0.722
Gorai.002G104500 Gossypium raimondii Gorai.002G104500 I 0.722
Gorai.003G149600 Gossypium raimondii Gorai.003G149600 I 0.704
Gorai.004G012800 Gossypium raimondii Gorai.004G012800 I 0.889
Gorai.006G120900 Gossypium raimondii Gorai.006G120900 I 0.833
Gorai.011G290800 Gossypium raimondii Gorai.011G290800 I 0.741
Lus10011645.g Linum usitatissimum Lus10011645.g I 0.778
Lus10018275.g Linum usitatissimum Lus10018275.g I 0.704
Lus10031769.g Linum usitatissimum Lus10031769.g I 0.741
Lus10036130.g Linum usitatissimum Lus10036130.g I 0.778
Lus10040373.g Linum usitatissimum Lus10040373.g I 0.870
MDP0000121203 Malus domestica MDP0000121203 I 0.722
MDP0000123013 Malus domestica MDP0000123013 I 0.889
MDP0000151784 Malus domestica MDP0000151784 I 0.889
MDP0000265429 Malus domestica MDP0000265429 I 0.704
MDP0000268890 Malus domestica MDP0000268890 I 0.722
MDP0000284409 Malus domestica MDP0000284409 I 0.722
MDP0000822986 Malus domestica MDP0000822986 I 0.833
orange1.1g031034m.g Citrus sinensis orange1.1g031034m.g I 0.704
orange1.1g036782m.g Citrus sinensis orange1.1g036782m.g I 0.704
orange1.1g044340m.g Citrus sinensis orange1.1g044340m.g I 0.741
SapurV1A.0023s0430 Salix purpurea SapurV1A.0023s0430 I 0.870
SapurV1A.0038s0110 Salix purpurea SapurV1A.0038s0110 I 0.870
SapurV1A.0059s0540 Salix purpurea SapurV1A.0059s0540 I 0.704
SapurV1A.0061s0670 Salix purpurea SapurV1A.0061s0670 I 0.722
SapurV1A.0673s0190 Salix purpurea SapurV1A.0673s0190 I 0.722
Thhalv10008917m.g Eutrema salsugineum Thhalv10008917m.g I 0.722
PK09808.1 Cannabis sativa PK09808.1 I 0.741
PK17019.1 Cannabis sativa PK17019.1 I 0.794
PK24688.1 Cannabis sativa PK24688.1 I 0.704
LjSGA_079580.1.1 Lotus japonicus LjSGA_079580.1.1 I 0.731
PDK_20s1810211g001 Phoenix dactylifera PDK_20s1810211g001 I 0.704
LBD11 Arabidopsis thaliana AT2G28500 N 0.741
Bo5g008590 Brassica oleracea Bo5g008590 N 0.759
Bra018675 Brassica rapa Bra018675 N 0.759
Bra031599 Brassica rapa Bra031599 N 0.704
Bra035698 Brassica rapa Bra035698 N 0.722
BRADI2G37960 Brachypodium distachyon BRADI2G37960 N 0.750
F775_02335 Aegilops tauschii F775_02335 N 0.759
GLYMA11G15810 Glycine max GLYMA11G15810 N 0.852
GSMUA_Achr3G17800_001 Musa acuminata GSMUA_Achr3G17800_001 N 0.815
OB03G23270 Oryza brachyantha OB03G23270 N 0.759
OMERI05G01730 Oryza meridionalis OMERI05G01730 N 0.767
OPUNC05G01600 Oryza punctata OPUNC05G01600 N 0.780
PGSC0003DMG400025384 Solanum tuberosum PGSC0003DMG400025384 N 0.815
Solyc04g050010.1 Solanum lycopersicum Solyc04g050010.1 N 0.741
Traes_4AS_669BAF6C7 Triticum aestivum Traes_4AS_669BAF6C7 N 0.741
VIT_13s0019g03720 Vitis vinifera VIT_13s0019g03720 N 0.704
VIT_13s0019g03780 Vitis vinifera VIT_13s0019g03780 N 0.722
VIT_13s0019g03820 Vitis vinifera VIT_13s0019g03820 N 0.741
VIT_13s0019g03830 Vitis vinifera VIT_13s0019g03830 N 0.704
VIT_13s0019g03840 Vitis vinifera VIT_13s0019g03840 N 0.722
Ca_02507 Cicer arietinum Ca_02507 N 0.778
cassava4159.m1 Manihot esculenta cassava4159.m1 N 0.712
cassava44959.m1 Manihot esculenta cassava44959.m1 N 0.833
Cucsa.166030 Cucumis sativus Cucsa.166030 N 0.815
Carubv10010390m.g Capsella rubella Carubv10010390m.g N 0.796
Ciclev10032782m.g Citrus clementina Ciclev10032782m.g N 0.778
Gorai.012G094200 Gossypium raimondii Gorai.012G094200 N 0.815
MDP0000879799 Malus domestica MDP0000879799 N 0.833
Pavir.Ib01336 Panicum virgatum Pavir.Ib01336 N 0.796
Thhalv10008781m.g Eutrema salsugineum Thhalv10008781m.g N 0.778
Thhalv10017165m.g Eutrema salsugineum Thhalv10017165m.g N 0.741
PDK_20s1595351g001 Phoenix dactylifera PDK_20s1595351g001 N 0.833