Bra018675 (Brassica rapa)
LOB

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF03195 (DUF260) IPR004883 Bra018675 T245056_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
Bra018675.1-P LOB 33 131

Links

Other LOB family TFs
Other Brassica rapa TFs

171 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Bo5g008590 Brassica oleracea Bo5g008590 N 1.000
Thhalv10008781m.g Eutrema salsugineum Thhalv10008781m.g N 0.960
LBD11 Arabidopsis thaliana AT2G28500 N 0.929
Bostr.27991s0074 Boechera stricta Bostr.27991s0074 N 0.929
Thhalv10017165m.g Eutrema salsugineum Thhalv10017165m.g N 0.929
Bo01039s010 Brassica oleracea Bo01039s010 N 0.919
Bo8g112780 Brassica oleracea Bo8g112780 N 0.919
LBD11 Arabidopsis lyrata fgenesh2_kg.4__820__AT2G28500.1 N 0.919
Bostr.25219s0157 Boechera stricta Bostr.25219s0157 N 0.919
Carubv10010390m.g Capsella rubella Carubv10010390m.g N 0.919
Bo4g165420 Brassica oleracea Bo4g165420 N 0.909
Bra011942 Brassica rapa Bra011942 N 0.909
Bra035698 Brassica rapa Bra035698 N 0.909
LBD1 Arabidopsis lyrata fgenesh1_pm.C_scaffold_1000623 N 0.909
Cagra.1671s0410 Capsella grandiflora Cagra.1671s0410 N 0.909
Cagra.9128s0007 Capsella grandiflora Cagra.9128s0007 N 0.909
Carubv10023989m.g Capsella rubella Carubv10023989m.g N 0.909
Bra031599 Brassica rapa Bra031599 N 0.899
Ciclev10029283m.g Citrus clementina Ciclev10029283m.g I 0.899
Eucgr.B02465 Eucalyptus grandis Eucgr.B02465 I 0.899
orange1.1g047491m.g Citrus sinensis orange1.1g047491m.g I 0.899
PK27389.1 Cannabis sativa PK27389.1 I 0.899
Bo3g040220 Brassica oleracea Bo3g040220 N 0.889
Bra000491 Brassica rapa Bra000491 N 0.889
TCM_041094 Theobroma cacao TCM_041094 I 0.889
VIT_13s0019g03700 Vitis vinifera VIT_13s0019g03700 I 0.889
30111.m000703 Ricinus communis 30111.m000703 I 0.889
GLYMA13G40370 Glycine max GLYMA13G40370 I 0.879
PRUPE_ppa011528mg Prunus persica PRUPE_ppa011528mg I 0.879
Ca_14605 Cicer arietinum Ca_14605 I 0.879
Pm000938 Prunus mume Pm000938 I 0.879
cassava11218.m1 Manihot esculenta cassava11218.m1 I 0.879
cassava819.valid.m1 Manihot esculenta cassava819.valid.m1 I 0.879
Ciclev10033956m.g Citrus clementina Ciclev10033956m.g I 0.879
Gorai.010G203800 Gossypium raimondii Gorai.010G203800 I 0.879
MDP0000218986 Malus domestica MDP0000218986 I 0.879
MDP0000318244 Malus domestica MDP0000318244 I 0.879
orange1.1g026556m.g Citrus sinensis orange1.1g026556m.g I 0.879
SapurV1A.0038s0110 Salix purpurea SapurV1A.0038s0110 I 0.879
chr3.CM0246.260.nc Lotus japonicus chr3.CM0246.260.nc N 0.879
GLYMA10G35760 Glycine max GLYMA10G35760 I 0.869
GLYMA11G15810 Glycine max GLYMA11G15810 N 0.869
GLYMA12G07650 Glycine max GLYMA12G07650 I 0.869
GLYMA20G31780 Glycine max GLYMA20G31780 I 0.869
POPTR_0008s04350 Populus trichocarpa POPTR_0008s04350 I 0.869
POPTR_0010s22470 Populus trichocarpa POPTR_0010s22470 I 0.869
cassava40961.m1 Manihot esculenta cassava40961.m1 I 0.869
evm.TU.supercontig_53.26 Carica papaya evm.TU.supercontig_53.26 N 0.869
Gorai.004G012800 Gossypium raimondii Gorai.004G012800 I 0.869
Gorai.013G002900 Gossypium raimondii Gorai.013G002900 I 0.869
MDP0000319331 Malus domestica MDP0000319331 I 0.869
SapurV1A.0023s0430 Salix purpurea SapurV1A.0023s0430 I 0.869
PK23777.1 Cannabis sativa PK23777.1 I 0.869
CM1887.100.nc Lotus japonicus CM1887.100.nc I 0.869
GLYMA15G05030 Glycine max GLYMA15G05030 I 0.859
GSMUA_Achr7G15500_001 Musa acuminata GSMUA_Achr7G15500_001 I 0.859
PRUPE_ppa023989mg Prunus persica PRUPE_ppa023989mg I 0.859
TCM_043081 Theobroma cacao TCM_043081 I 0.859
Cla020379 Citrullus lanatus Cla020379 I 0.859
gene25294-v1.0-hybrid Fragaria vesca gene25294-v1.0-hybrid I 0.859
Gorai.001G129700 Gossypium raimondii Gorai.001G129700 I 0.859
Gorai.012G185900 Gossypium raimondii Gorai.012G185900 N 0.849
GSMUA_Achr10G22970_001 Musa acuminata GSMUA_Achr10G22970_001 I 0.848
MTR_1g095850 Medicago truncatula MTR_1g095850 I 0.848
VIT_06s0004g03350 Vitis vinifera VIT_06s0004g03350 I 0.848
Ca_04287 Cicer arietinum Ca_04287 I 0.848
Pm018585 Prunus mume Pm018585 I 0.848
Eucgr.J01123 Eucalyptus grandis Eucgr.J01123 I 0.848
Gorai.006G120900 Gossypium raimondii Gorai.006G120900 I 0.848
Gorai.012G094200 Gossypium raimondii Gorai.012G094200 N 0.848
OBART05G01640 Oryza barthii OBART05G01640 N 0.846
OMERI05G01740 Oryza meridionalis OMERI05G01740 N 0.843
OPUNC05G01610 Oryza punctata OPUNC05G01610 N 0.843
MTR_2g093310 Medicago truncatula MTR_2g093310 I 0.838
MTR_4g060950 Medicago truncatula MTR_4g060950 I 0.838
Solyc05g048740.2 Solanum lycopersicum Solyc05g048740.2 I 0.838
VIT_06s0004g03330 Vitis vinifera VIT_06s0004g03330 I 0.838
Cla000556 Citrullus lanatus Cla000556 I 0.838
cassava44959.m1 Manihot esculenta cassava44959.m1 N 0.838
Cucsa.166030 Cucumis sativus Cucsa.166030 N 0.838
mgf022524m Mimulus guttatus mgf022524m N 0.838
Lus10040373.g Linum usitatissimum Lus10040373.g I 0.838
MDP0000123013 Malus domestica MDP0000123013 I 0.838
MDP0000151784 Malus domestica MDP0000151784 I 0.838
MDP0000822986 Malus domestica MDP0000822986 I 0.838
GSMUA_Achr6G33070_001 Musa acuminata GSMUA_Achr6G33070_001 I 0.828
Solyc04g050010.1 Solanum lycopersicum Solyc04g050010.1 N 0.828
Lus10011645.g Linum usitatissimum Lus10011645.g I 0.828
Lus10036130.g Linum usitatissimum Lus10036130.g I 0.828
MDP0000879799 Malus domestica MDP0000879799 N 0.828
evm.TU.contig_40341.1 Carica papaya evm.TU.contig_40341.1 I 0.821
OB05G11740 Oryza brachyantha OB05G11740 I 0.818
PGSC0003DMG400025400 Solanum tuberosum PGSC0003DMG400025400 I 0.818
Solyc11g072470.1 Solanum lycopersicum Solyc11g072470.1 I 0.818
Cucsa.052720 Cucumis sativus Cucsa.052720 I 0.818
Ciclev10032782m.g Citrus clementina Ciclev10032782m.g N 0.818
GRMZM2G145568 Zea mays GRMZM2G145568 N 0.808
LPERR05G01520 Leersia perrieri LPERR05G01520 N 0.808
ORGLA05G0016500 Oryza glaberrima ORGLA05G0016500 N 0.808
PGSC0003DMG400004138 Solanum tuberosum PGSC0003DMG400004138 N 0.808
PGSC0003DMG400007503 Solanum tuberosum PGSC0003DMG400007503 I 0.808
Sb09g002190 Sorghum bicolor Sb09g002190 I 0.808
Solyc06g005090.2 Solanum lycopersicum Solyc06g005090.2 I 0.808
mgf019622m Mimulus guttatus mgf019622m N 0.808
gene23226-v1.0-hybrid Fragaria vesca gene23226-v1.0-hybrid N 0.808
Eucgr.E02410 Eucalyptus grandis Eucgr.E02410 N 0.800
AC214648.3_FG005 Zea mays AC214648.3_FG005 I 0.798
AMTR_s00080p00153120 Amborella trichopoda AMTR_s00080p00153120 N 0.798
GRMZM2G021095 Zea mays GRMZM2G021095 N 0.798
GRMZM2G165805 Zea mays GRMZM2G165805 N 0.798
GSMUA_Achr8G09700_001 Musa acuminata GSMUA_Achr8G09700_001 N 0.798
Sb01g038650 Sorghum bicolor Sb01g038650 N 0.798
Si024430m.g Setaria italica Si024430m.g N 0.798
Cla005133 Citrullus lanatus Cla005133 N 0.798
Cla005134 Citrullus lanatus Cla005134 N 0.798
mgf015666m Mimulus guttatus mgf015666m N 0.798
Pavir.Ca00718 Panicum virgatum Pavir.Ca00718 I 0.798
Pavir.Ia03612 Panicum virgatum Pavir.Ia03612 N 0.798
Pavir.Ib01336 Panicum virgatum Pavir.Ib01336 N 0.798
Pavir.J04684 Panicum virgatum Pavir.J04684 I 0.798
MLOC_68570 Hordeum vulgare MLOC_68570 N 0.788
Si037280m.g Setaria italica Si037280m.g N 0.788
Traes_1AS_26CB95294 Triticum aestivum Traes_1AS_26CB95294 N 0.788
Traes_1BS_CE38938A8 Triticum aestivum Traes_1BS_CE38938A8 N 0.788
Traes_1DS_A31FB6CB2 Triticum aestivum Traes_1DS_A31FB6CB2 N 0.788
Ca_02507 Cicer arietinum Ca_02507 N 0.788
Cucsa.207390 Cucumis sativus Cucsa.207390 N 0.788
Aquca_027_00112 Aquilegia coerulea Aquca_027_00112 N 0.788
cassava16668.m1 Manihot esculenta cassava16668.m1 N 0.787
evm.TU.contig_40341.2 Carica papaya evm.TU.contig_40341.2 N 0.783
BGIOSGA010952 Oryza indica BGIOSGA010952 N 0.778
BGIOSGA038947 Oryza indica BGIOSGA038947 N 0.778
OBART03G13260 Oryza barthii OBART03G13260 N 0.778
OGLUM03G13350 Oryza glumaepatula OGLUM03G13350 N 0.778
OMERI03G12370 Oryza meridionalis OMERI03G12370 N 0.778
ONIVA03G14510 Oryza nivara ONIVA03G14510 N 0.778
OPUNC03G12790 Oryza punctata OPUNC03G12790 N 0.778
ORGLA03G0128100 Oryza glaberrima ORGLA03G0128100 N 0.778
ORUFI03G13900 Oryza rufipogon ORUFI03G13900 N 0.778
OS03G0287400 Oryza sativa OS03G0287400 N 0.778
Cucsa.207400 Cucumis sativus Cucsa.207400 N 0.778
OB03G23270 Oryza brachyantha OB03G23270 N 0.768
Ciclev10032772m.g Citrus clementina Ciclev10032772m.g I 0.768
orange1.1g045080m.g Citrus sinensis orange1.1g045080m.g I 0.768
Solyc06g075330.1 Solanum lycopersicum Solyc06g075330.1 N 0.761
PDK_20s1376911g004 Phoenix dactylifera PDK_20s1376911g004 I 0.759
F775_02335 Aegilops tauschii F775_02335 N 0.758
LPERR03G11720 Leersia perrieri LPERR03G11720 N 0.758
Traes_4BL_97EDABD02 Triticum aestivum Traes_4BL_97EDABD02 N 0.758
VIT_13s0019g03750 Vitis vinifera VIT_13s0019g03750 N 0.758
Cucsa.358620 Cucumis sativus Cucsa.358620 N 0.750
BRADI1G65760 Brachypodium distachyon BRADI1G65760 N 0.747
GSMUA_Achr3G17800_001 Musa acuminata GSMUA_Achr3G17800_001 N 0.747
GSMUA_Achr4G16790_001 Musa acuminata GSMUA_Achr4G16790_001 N 0.737
Traes_4AS_669BAF6C7 Triticum aestivum Traes_4AS_669BAF6C7 N 0.737
VIT_13s0019g03710 Vitis vinifera VIT_13s0019g03710 N 0.737
PK17019.1 Cannabis sativa PK17019.1 I 0.735
GSMUA_Achr9G04330_001 Musa acuminata GSMUA_Achr9G04330_001 N 0.717
VIT_13s0019g03760 Vitis vinifera VIT_13s0019g03760 N 0.717
VIT_13s0019g03830 Vitis vinifera VIT_13s0019g03830 N 0.717
Cucsa.275710 Cucumis sativus Cucsa.275710 N 0.717
PK09808.1 Cannabis sativa PK09808.1 I 0.714
VIT_13s0019g03800 Vitis vinifera VIT_13s0019g03800 N 0.713
Cucsa.011680 Cucumis sativus Cucsa.011680 N 0.711
PGSC0003DMG400025384 Solanum tuberosum PGSC0003DMG400025384 N 0.707
VIT_13s0019g03720 Vitis vinifera VIT_13s0019g03720 N 0.707
Lus10031191.g Linum usitatissimum Lus10031191.g I 0.707
BGIOSGA018905 Oryza indica BGIOSGA018905 I 0.702
ORUFI05G01750 Oryza rufipogon ORUFI05G01750 I 0.702
OS03G0659700 Oryza sativa OS03G0659700 I 0.702
OS05G0123000 Oryza sativa OS05G0123000 I 0.702