Bra000491 (Brassica rapa)
LOB

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF03195 (DUF260) IPR004883 Bra000491 T245030_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
Bra000491.1-P LOB 54 152

Links

Other LOB family TFs
Other Brassica rapa TFs

153 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Bo3g040220 Brassica oleracea Bo3g040220 N 0.980
LBD11 Arabidopsis thaliana AT2G28500 N 0.960
Thhalv10017165m.g Eutrema salsugineum Thhalv10017165m.g N 0.960
Bo01039s010 Brassica oleracea Bo01039s010 N 0.949
LBD11 Arabidopsis lyrata fgenesh2_kg.4__820__AT2G28500.1 N 0.949
Bo4g165420 Brassica oleracea Bo4g165420 N 0.939
Bra035698 Brassica rapa Bra035698 N 0.939
Bostr.27991s0074 Boechera stricta Bostr.27991s0074 N 0.939
Cagra.9128s0007 Capsella grandiflora Cagra.9128s0007 N 0.939
Carubv10023989m.g Capsella rubella Carubv10023989m.g N 0.939
Bra011942 Brassica rapa Bra011942 N 0.929
LBD1 Arabidopsis lyrata fgenesh1_pm.C_scaffold_1000623 N 0.909
Bostr.25219s0157 Boechera stricta Bostr.25219s0157 N 0.909
Carubv10010390m.g Capsella rubella Carubv10010390m.g N 0.909
Thhalv10008781m.g Eutrema salsugineum Thhalv10008781m.g N 0.909
Cagra.1671s0410 Capsella grandiflora Cagra.1671s0410 N 0.899
Bo5g008590 Brassica oleracea Bo5g008590 N 0.889
Bra018675 Brassica rapa Bra018675 N 0.889
PK27389.1 Cannabis sativa PK27389.1 I 0.889
GLYMA13G40370 Glycine max GLYMA13G40370 I 0.879
PRUPE_ppa011528mg Prunus persica PRUPE_ppa011528mg I 0.879
TCM_041094 Theobroma cacao TCM_041094 I 0.879
Pm000938 Prunus mume Pm000938 I 0.879
30111.m000703 Ricinus communis 30111.m000703 I 0.879
cassava11218.m1 Manihot esculenta cassava11218.m1 I 0.879
cassava819.valid.m1 Manihot esculenta cassava819.valid.m1 I 0.879
Ciclev10029283m.g Citrus clementina Ciclev10029283m.g I 0.879
orange1.1g047491m.g Citrus sinensis orange1.1g047491m.g I 0.879
chr3.CM0246.260.nc Lotus japonicus chr3.CM0246.260.nc N 0.879
MTR_4g060950 Medicago truncatula MTR_4g060950 I 0.869
VIT_06s0004g03330 Vitis vinifera VIT_06s0004g03330 I 0.869
Ca_14605 Cicer arietinum Ca_14605 I 0.869
Gorai.013G002900 Gossypium raimondii Gorai.013G002900 I 0.869
MDP0000319331 Malus domestica MDP0000319331 I 0.869
GLYMA10G35760 Glycine max GLYMA10G35760 I 0.859
GLYMA11G15810 Glycine max GLYMA11G15810 N 0.859
GLYMA12G07650 Glycine max GLYMA12G07650 I 0.859
GLYMA20G31780 Glycine max GLYMA20G31780 I 0.859
VIT_13s0019g03700 Vitis vinifera VIT_13s0019g03700 I 0.859
Ciclev10033956m.g Citrus clementina Ciclev10033956m.g I 0.859
Eucgr.B02465 Eucalyptus grandis Eucgr.B02465 I 0.859
Gorai.004G012800 Gossypium raimondii Gorai.004G012800 I 0.859
Gorai.006G120900 Gossypium raimondii Gorai.006G120900 I 0.859
MDP0000218986 Malus domestica MDP0000218986 I 0.859
MDP0000318244 Malus domestica MDP0000318244 I 0.859
orange1.1g026556m.g Citrus sinensis orange1.1g026556m.g I 0.859
CM1887.100.nc Lotus japonicus CM1887.100.nc I 0.859
GLYMA15G05030 Glycine max GLYMA15G05030 I 0.848
MTR_2g093310 Medicago truncatula MTR_2g093310 I 0.848
VIT_06s0004g03350 Vitis vinifera VIT_06s0004g03350 I 0.848
cassava40961.m1 Manihot esculenta cassava40961.m1 I 0.848
Eucgr.J01123 Eucalyptus grandis Eucgr.J01123 I 0.848
gene25294-v1.0-hybrid Fragaria vesca gene25294-v1.0-hybrid I 0.848
Gorai.001G129700 Gossypium raimondii Gorai.001G129700 I 0.848
Lus10011645.g Linum usitatissimum Lus10011645.g I 0.848
Lus10036130.g Linum usitatissimum Lus10036130.g I 0.848
SapurV1A.0038s0110 Salix purpurea SapurV1A.0038s0110 I 0.848
Bo8g112780 Brassica oleracea Bo8g112780 N 0.838
MTR_1g095850 Medicago truncatula MTR_1g095850 I 0.838
PGSC0003DMG400007503 Solanum tuberosum PGSC0003DMG400007503 I 0.838
PGSC0003DMG400025400 Solanum tuberosum PGSC0003DMG400025400 I 0.838
POPTR_0008s04350 Populus trichocarpa POPTR_0008s04350 I 0.838
POPTR_0010s22470 Populus trichocarpa POPTR_0010s22470 I 0.838
PRUPE_ppa023989mg Prunus persica PRUPE_ppa023989mg I 0.838
TCM_043081 Theobroma cacao TCM_043081 I 0.838
Ca_04287 Cicer arietinum Ca_04287 I 0.838
Cla000556 Citrullus lanatus Cla000556 I 0.838
Cla020379 Citrullus lanatus Cla020379 I 0.838
Cucsa.166030 Cucumis sativus Cucsa.166030 N 0.838
evm.TU.supercontig_53.26 Carica papaya evm.TU.supercontig_53.26 N 0.838
Gorai.010G203800 Gossypium raimondii Gorai.010G203800 I 0.838
Lus10040373.g Linum usitatissimum Lus10040373.g I 0.838
SapurV1A.0023s0430 Salix purpurea SapurV1A.0023s0430 I 0.838
PK23777.1 Cannabis sativa PK23777.1 I 0.838
Solyc06g005090.2 Solanum lycopersicum Solyc06g005090.2 I 0.828
Solyc11g072470.1 Solanum lycopersicum Solyc11g072470.1 I 0.828
Pm018585 Prunus mume Pm018585 I 0.828
Cucsa.052720 Cucumis sativus Cucsa.052720 I 0.828
gene23226-v1.0-hybrid Fragaria vesca gene23226-v1.0-hybrid N 0.828
Gorai.012G094200 Gossypium raimondii Gorai.012G094200 N 0.828
Bra031599 Brassica rapa Bra031599 N 0.818
GSMUA_Achr10G22970_001 Musa acuminata GSMUA_Achr10G22970_001 I 0.818
GSMUA_Achr7G15500_001 Musa acuminata GSMUA_Achr7G15500_001 I 0.818
Solyc05g048740.2 Solanum lycopersicum Solyc05g048740.2 I 0.818
mgf015666m Mimulus guttatus mgf015666m N 0.818
MDP0000879799 Malus domestica MDP0000879799 N 0.818
Ca_02507 Cicer arietinum Ca_02507 N 0.808
Cla005134 Citrullus lanatus Cla005134 N 0.808
cassava44959.m1 Manihot esculenta cassava44959.m1 N 0.808
Ciclev10032782m.g Citrus clementina Ciclev10032782m.g N 0.808
Solyc04g050010.1 Solanum lycopersicum Solyc04g050010.1 N 0.798
MDP0000123013 Malus domestica MDP0000123013 I 0.798
MDP0000151784 Malus domestica MDP0000151784 I 0.798
Solyc06g075330.1 Solanum lycopersicum Solyc06g075330.1 N 0.795
AMTR_s00080p00153120 Amborella trichopoda AMTR_s00080p00153120 N 0.788
GSMUA_Achr6G33070_001 Musa acuminata GSMUA_Achr6G33070_001 I 0.788
GSMUA_Achr8G09700_001 Musa acuminata GSMUA_Achr8G09700_001 N 0.788
LPERR05G01520 Leersia perrieri LPERR05G01520 N 0.788
mgf019622m Mimulus guttatus mgf019622m N 0.788
MDP0000822986 Malus domestica MDP0000822986 I 0.788
cassava16668.m1 Manihot esculenta cassava16668.m1 N 0.787
GRMZM2G021095 Zea mays GRMZM2G021095 N 0.778
OB05G11740 Oryza brachyantha OB05G11740 I 0.778
PGSC0003DMG400004138 Solanum tuberosum PGSC0003DMG400004138 N 0.778
Sb01g038650 Sorghum bicolor Sb01g038650 N 0.778
Sb09g002190 Sorghum bicolor Sb09g002190 I 0.778
VIT_13s0019g03750 Vitis vinifera VIT_13s0019g03750 N 0.778
Cucsa.207400 Cucumis sativus Cucsa.207400 N 0.778
mgf022524m Mimulus guttatus mgf022524m N 0.778
Aquca_027_00112 Aquilegia coerulea Aquca_027_00112 N 0.778
Pavir.Ia03612 Panicum virgatum Pavir.Ia03612 N 0.778
Pavir.Ib01336 Panicum virgatum Pavir.Ib01336 N 0.778
GRMZM2G145568 Zea mays GRMZM2G145568 N 0.768
GRMZM2G165805 Zea mays GRMZM2G165805 N 0.768
LPERR03G11720 Leersia perrieri LPERR03G11720 N 0.768
MLOC_68570 Hordeum vulgare MLOC_68570 N 0.768
ORGLA05G0016500 Oryza glaberrima ORGLA05G0016500 N 0.768
Traes_1AS_26CB95294 Triticum aestivum Traes_1AS_26CB95294 N 0.768
Traes_1BS_CE38938A8 Triticum aestivum Traes_1BS_CE38938A8 N 0.768
Traes_1DS_A31FB6CB2 Triticum aestivum Traes_1DS_A31FB6CB2 N 0.768
Pavir.Ca00718 Panicum virgatum Pavir.Ca00718 I 0.768
Pavir.J04684 Panicum virgatum Pavir.J04684 I 0.768
AC214648.3_FG005 Zea mays AC214648.3_FG005 I 0.758
BGIOSGA010952 Oryza indica BGIOSGA010952 N 0.758
BGIOSGA038947 Oryza indica BGIOSGA038947 N 0.758
OBART03G13260 Oryza barthii OBART03G13260 N 0.758
OGLUM03G13350 Oryza glumaepatula OGLUM03G13350 N 0.758
OMERI03G12370 Oryza meridionalis OMERI03G12370 N 0.758
ONIVA03G14510 Oryza nivara ONIVA03G14510 N 0.758
OPUNC03G12790 Oryza punctata OPUNC03G12790 N 0.758
ORGLA03G0128100 Oryza glaberrima ORGLA03G0128100 N 0.758
ORUFI03G13900 Oryza rufipogon ORUFI03G13900 N 0.758
OS03G0287400 Oryza sativa OS03G0287400 N 0.758
Ciclev10032772m.g Citrus clementina Ciclev10032772m.g I 0.758
orange1.1g045080m.g Citrus sinensis orange1.1g045080m.g I 0.758
OB03G23270 Oryza brachyantha OB03G23270 N 0.747
Si024430m.g Setaria italica Si024430m.g N 0.747
Si037280m.g Setaria italica Si037280m.g N 0.747
VIT_13s0019g03710 Vitis vinifera VIT_13s0019g03710 N 0.747
VIT_13s0019g03720 Vitis vinifera VIT_13s0019g03720 N 0.747
BRADI1G65760 Brachypodium distachyon BRADI1G65760 N 0.737
F775_02335 Aegilops tauschii F775_02335 N 0.737
Traes_4BL_97EDABD02 Triticum aestivum Traes_4BL_97EDABD02 N 0.737
VIT_13s0019g03830 Vitis vinifera VIT_13s0019g03830 N 0.737
Cla005133 Citrullus lanatus Cla005133 N 0.737
GSMUA_Achr3G17800_001 Musa acuminata GSMUA_Achr3G17800_001 N 0.727
Traes_4AS_669BAF6C7 Triticum aestivum Traes_4AS_669BAF6C7 N 0.727
GSMUA_Achr4G16790_001 Musa acuminata GSMUA_Achr4G16790_001 N 0.717
PGSC0003DMG400025384 Solanum tuberosum PGSC0003DMG400025384 N 0.717
VIT_13s0019g03760 Vitis vinifera VIT_13s0019g03760 N 0.717
Cucsa.207390 Cucumis sativus Cucsa.207390 N 0.717
VIT_13s0019g03820 Vitis vinifera VIT_13s0019g03820 N 0.707
mgf018189m Mimulus guttatus mgf018189m I 0.707