Cla005134 (Citrullus lanatus)
LOB

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03195 (DUF260) IPR004883 Cla005134 T246330_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
Cla005134 LOB 38 136

Links

Other LOB family TFs
Other Citrullus lanatus TFs

164 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Cucsa.207400 Cucumis sativus Cucsa.207400 N 0.960
GLYMA12G07650 Glycine max GLYMA12G07650 I 0.899
GLYMA20G31780 Glycine max GLYMA20G31780 I 0.889
PRUPE_ppa011528mg Prunus persica PRUPE_ppa011528mg I 0.889
PRUPE_ppa023989mg Prunus persica PRUPE_ppa023989mg I 0.889
TCM_041094 Theobroma cacao TCM_041094 I 0.889
VIT_13s0019g03700 Vitis vinifera VIT_13s0019g03700 I 0.889
Pm000938 Prunus mume Pm000938 I 0.889
Pm018585 Prunus mume Pm018585 I 0.889
30111.m000703 Ricinus communis 30111.m000703 I 0.889
cassava11218.m1 Manihot esculenta cassava11218.m1 I 0.889
cassava819.valid.m1 Manihot esculenta cassava819.valid.m1 I 0.889
Eucgr.B02465 Eucalyptus grandis Eucgr.B02465 I 0.889
gene25294-v1.0-hybrid Fragaria vesca gene25294-v1.0-hybrid I 0.889
Gorai.001G129700 Gossypium raimondii Gorai.001G129700 I 0.889
Gorai.006G120900 Gossypium raimondii Gorai.006G120900 I 0.889
Lus10040373.g Linum usitatissimum Lus10040373.g I 0.889
MDP0000218986 Malus domestica MDP0000218986 I 0.889
MDP0000318244 Malus domestica MDP0000318244 I 0.889
MDP0000319331 Malus domestica MDP0000319331 I 0.889
chr3.CM0246.260.nc Lotus japonicus chr3.CM0246.260.nc N 0.889
CM1887.100.nc Lotus japonicus CM1887.100.nc I 0.889
GLYMA10G35760 Glycine max GLYMA10G35760 I 0.879
GSMUA_Achr10G22970_001 Musa acuminata GSMUA_Achr10G22970_001 I 0.879
TCM_043081 Theobroma cacao TCM_043081 I 0.879
Cla000556 Citrullus lanatus Cla000556 I 0.879
cassava40961.m1 Manihot esculenta cassava40961.m1 I 0.879
Cucsa.052720 Cucumis sativus Cucsa.052720 I 0.879
Ciclev10029283m.g Citrus clementina Ciclev10029283m.g I 0.879
Gorai.010G203800 Gossypium raimondii Gorai.010G203800 I 0.879
orange1.1g047491m.g Citrus sinensis orange1.1g047491m.g I 0.879
GLYMA11G15810 Glycine max GLYMA11G15810 N 0.869
MTR_1g095850 Medicago truncatula MTR_1g095850 I 0.869
MTR_2g093310 Medicago truncatula MTR_2g093310 I 0.869
MTR_4g060950 Medicago truncatula MTR_4g060950 I 0.869
PGSC0003DMG400007503 Solanum tuberosum PGSC0003DMG400007503 I 0.869
Solyc05g048740.2 Solanum lycopersicum Solyc05g048740.2 I 0.869
VIT_06s0004g03330 Vitis vinifera VIT_06s0004g03330 I 0.869
Ca_04287 Cicer arietinum Ca_04287 I 0.869
Ciclev10033956m.g Citrus clementina Ciclev10033956m.g I 0.869
Gorai.004G012800 Gossypium raimondii Gorai.004G012800 I 0.869
orange1.1g026556m.g Citrus sinensis orange1.1g026556m.g I 0.869
PK27389.1 Cannabis sativa PK27389.1 I 0.869
GLYMA13G40370 Glycine max GLYMA13G40370 I 0.859
GLYMA15G05030 Glycine max GLYMA15G05030 I 0.859
POPTR_0008s04350 Populus trichocarpa POPTR_0008s04350 I 0.859
Solyc06g005090.2 Solanum lycopersicum Solyc06g005090.2 I 0.859
VIT_06s0004g03350 Vitis vinifera VIT_06s0004g03350 I 0.859
Ca_14605 Cicer arietinum Ca_14605 I 0.859
mgf022524m Mimulus guttatus mgf022524m N 0.859
MDP0000822986 Malus domestica MDP0000822986 I 0.859
MDP0000879799 Malus domestica MDP0000879799 N 0.859
GSMUA_Achr7G15500_001 Musa acuminata GSMUA_Achr7G15500_001 I 0.848
PGSC0003DMG400025400 Solanum tuberosum PGSC0003DMG400025400 I 0.848
POPTR_0010s22470 Populus trichocarpa POPTR_0010s22470 I 0.848
Solyc11g072470.1 Solanum lycopersicum Solyc11g072470.1 I 0.848
Ca_02507 Cicer arietinum Ca_02507 N 0.848
Cla005133 Citrullus lanatus Cla005133 N 0.848
gene23226-v1.0-hybrid Fragaria vesca gene23226-v1.0-hybrid N 0.848
MDP0000123013 Malus domestica MDP0000123013 I 0.848
MDP0000151784 Malus domestica MDP0000151784 I 0.848
SapurV1A.0023s0430 Salix purpurea SapurV1A.0023s0430 I 0.848
GSMUA_Achr6G33070_001 Musa acuminata GSMUA_Achr6G33070_001 I 0.838
Cla020379 Citrullus lanatus Cla020379 I 0.838
cassava44959.m1 Manihot esculenta cassava44959.m1 N 0.838
Cucsa.166030 Cucumis sativus Cucsa.166030 N 0.838
mgf015666m Mimulus guttatus mgf015666m N 0.838
Bostr.27991s0074 Boechera stricta Bostr.27991s0074 N 0.838
SapurV1A.0038s0110 Salix purpurea SapurV1A.0038s0110 I 0.838
PK23777.1 Cannabis sativa PK23777.1 I 0.838
Bo01039s010 Brassica oleracea Bo01039s010 N 0.828
LBD11 Arabidopsis lyrata fgenesh2_kg.4__820__AT2G28500.1 N 0.828
LPERR05G01520 Leersia perrieri LPERR05G01520 N 0.828
Bostr.25219s0157 Boechera stricta Bostr.25219s0157 N 0.828
Cagra.9128s0007 Capsella grandiflora Cagra.9128s0007 N 0.828
Carubv10010390m.g Capsella rubella Carubv10010390m.g N 0.828
Carubv10023989m.g Capsella rubella Carubv10023989m.g N 0.828
Eucgr.J01123 Eucalyptus grandis Eucgr.J01123 I 0.828
evm.TU.supercontig_53.26 Carica papaya evm.TU.supercontig_53.26 N 0.828
Gorai.013G002900 Gossypium raimondii Gorai.013G002900 I 0.828
Lus10011645.g Linum usitatissimum Lus10011645.g I 0.828
Lus10036130.g Linum usitatissimum Lus10036130.g I 0.828
LBD11 Arabidopsis thaliana AT2G28500 N 0.818
Bo4g165420 Brassica oleracea Bo4g165420 N 0.818
Bo8g112780 Brassica oleracea Bo8g112780 N 0.818
Bra011942 Brassica rapa Bra011942 N 0.818
Bra035698 Brassica rapa Bra035698 N 0.818
LBD1 Arabidopsis lyrata fgenesh1_pm.C_scaffold_1000623 N 0.818
GSMUA_Achr8G09700_001 Musa acuminata GSMUA_Achr8G09700_001 N 0.818
Solyc04g050010.1 Solanum lycopersicum Solyc04g050010.1 N 0.818
Solyc06g075330.1 Solanum lycopersicum Solyc06g075330.1 N 0.818
Cagra.1671s0410 Capsella grandiflora Cagra.1671s0410 N 0.818
Thhalv10017165m.g Eutrema salsugineum Thhalv10017165m.g N 0.818
cassava16668.m1 Manihot esculenta cassava16668.m1 N 0.809
AMTR_s00080p00153120 Amborella trichopoda AMTR_s00080p00153120 N 0.808
Bo3g040220 Brassica oleracea Bo3g040220 N 0.808
Bra000491 Brassica rapa Bra000491 N 0.808
Bra031599 Brassica rapa Bra031599 N 0.808
GRMZM2G021095 Zea mays GRMZM2G021095 N 0.808
OB05G11740 Oryza brachyantha OB05G11740 I 0.808
ORGLA05G0016500 Oryza glaberrima ORGLA05G0016500 N 0.808
PGSC0003DMG400004138 Solanum tuberosum PGSC0003DMG400004138 N 0.808
Sb01g038650 Sorghum bicolor Sb01g038650 N 0.808
VIT_13s0019g03750 Vitis vinifera VIT_13s0019g03750 N 0.808
mgf019622m Mimulus guttatus mgf019622m N 0.808
Aquca_027_00112 Aquilegia coerulea Aquca_027_00112 N 0.808
Ciclev10032782m.g Citrus clementina Ciclev10032782m.g N 0.808
Gorai.012G094200 Gossypium raimondii Gorai.012G094200 N 0.808
Pavir.Ia03612 Panicum virgatum Pavir.Ia03612 N 0.808
Pavir.Ib01336 Panicum virgatum Pavir.Ib01336 N 0.808
Thhalv10008781m.g Eutrema salsugineum Thhalv10008781m.g N 0.808
OPUNC05G01610 Oryza punctata OPUNC05G01610 N 0.804
Bo5g008590 Brassica oleracea Bo5g008590 N 0.798
Bra018675 Brassica rapa Bra018675 N 0.798
GRMZM2G145568 Zea mays GRMZM2G145568 N 0.798
GRMZM2G165805 Zea mays GRMZM2G165805 N 0.798
Sb09g002190 Sorghum bicolor Sb09g002190 I 0.798
Si024430m.g Setaria italica Si024430m.g N 0.798
Cucsa.207390 Cucumis sativus Cucsa.207390 N 0.798
Pavir.Ca00718 Panicum virgatum Pavir.Ca00718 I 0.798
Pavir.J04684 Panicum virgatum Pavir.J04684 I 0.798
MLOC_68570 Hordeum vulgare MLOC_68570 N 0.788
OBART05G01640 Oryza barthii OBART05G01640 N 0.788
Si037280m.g Setaria italica Si037280m.g N 0.788
Traes_1AS_26CB95294 Triticum aestivum Traes_1AS_26CB95294 N 0.788
Traes_1BS_CE38938A8 Triticum aestivum Traes_1BS_CE38938A8 N 0.788
Traes_1DS_A31FB6CB2 Triticum aestivum Traes_1DS_A31FB6CB2 N 0.788
BGIOSGA010952 Oryza indica BGIOSGA010952 N 0.778
BGIOSGA038947 Oryza indica BGIOSGA038947 N 0.778
F775_02335 Aegilops tauschii F775_02335 N 0.778
OB03G23270 Oryza brachyantha OB03G23270 N 0.778
OBART03G13260 Oryza barthii OBART03G13260 N 0.778
OGLUM03G13350 Oryza glumaepatula OGLUM03G13350 N 0.778
OMERI03G12370 Oryza meridionalis OMERI03G12370 N 0.778
ONIVA03G14510 Oryza nivara ONIVA03G14510 N 0.778
OPUNC03G12790 Oryza punctata OPUNC03G12790 N 0.778
ORGLA03G0128100 Oryza glaberrima ORGLA03G0128100 N 0.778
ORUFI03G13900 Oryza rufipogon ORUFI03G13900 N 0.778
OS03G0287400 Oryza sativa OS03G0287400 N 0.778
Ciclev10032772m.g Citrus clementina Ciclev10032772m.g I 0.778
orange1.1g045080m.g Citrus sinensis orange1.1g045080m.g I 0.778
Traes_4AS_669BAF6C7 Triticum aestivum Traes_4AS_669BAF6C7 N 0.768
Traes_4BL_97EDABD02 Triticum aestivum Traes_4BL_97EDABD02 N 0.768
VIT_13s0019g03710 Vitis vinifera VIT_13s0019g03710 N 0.768
VIT_13s0019g03760 Vitis vinifera VIT_13s0019g03760 N 0.768
BRADI1G65760 Brachypodium distachyon BRADI1G65760 N 0.758
LPERR03G11720 Leersia perrieri LPERR03G11720 N 0.758
AC214648.3_FG005 Zea mays AC214648.3_FG005 I 0.747
VIT_13s0019g03720 Vitis vinifera VIT_13s0019g03720 N 0.747
GSMUA_Achr3G17800_001 Musa acuminata GSMUA_Achr3G17800_001 N 0.737
GSMUA_Achr4G16790_001 Musa acuminata GSMUA_Achr4G16790_001 N 0.737
VIT_13s0019g03830 Vitis vinifera VIT_13s0019g03830 N 0.737
VIT_13s0019g03810 Vitis vinifera VIT_13s0019g03810 N 0.727
VIT_13s0019g03780 Vitis vinifera VIT_13s0019g03780 N 0.717
VIT_13s0019g03820 Vitis vinifera VIT_13s0019g03820 N 0.717
BRADI4G44850 Brachypodium distachyon BRADI4G44850 I 0.707
MLOC_5148 Hordeum vulgare MLOC_5148 I 0.707
PGSC0003DMG400025384 Solanum tuberosum PGSC0003DMG400025384 N 0.707
PGSC0003DMG400030456 Solanum tuberosum PGSC0003DMG400030456 I 0.707
Solyc06g082310.2 Solanum lycopersicum Solyc06g082310.2 I 0.707
TRIUR3_11082 Triticum urartu TRIUR3_11082 I 0.707
VIT_13s0019g03840 Vitis vinifera VIT_13s0019g03840 N 0.707
mgf018189m Mimulus guttatus mgf018189m I 0.707
Eucgr.J00175 Eucalyptus grandis Eucgr.J00175 I 0.707