Cucsa.207390 (Cucumis sativus)
LOB

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03195 (DUF260) IPR004883 Cucsa.207390 T246514_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
Cucsa.207390.1 LOB 19 117

Links

Other LOB family TFs
Other Cucumis sativus TFs

131 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Cla005133 Citrullus lanatus Cla005133 N 0.929
gene25294-v1.0-hybrid Fragaria vesca gene25294-v1.0-hybrid I 0.808
GLYMA12G07650 Glycine max GLYMA12G07650 I 0.798
PRUPE_ppa011528mg Prunus persica PRUPE_ppa011528mg I 0.798
VIT_13s0019g03700 Vitis vinifera VIT_13s0019g03700 I 0.798
Cla005134 Citrullus lanatus Cla005134 N 0.798
Pm000938 Prunus mume Pm000938 I 0.798
cassava11218.m1 Manihot esculenta cassava11218.m1 I 0.798
cassava819.valid.m1 Manihot esculenta cassava819.valid.m1 I 0.798
mgf022524m Mimulus guttatus mgf022524m N 0.798
MDP0000218986 Malus domestica MDP0000218986 I 0.798
MDP0000318244 Malus domestica MDP0000318244 I 0.798
Bo5g008590 Brassica oleracea Bo5g008590 N 0.788
Bra018675 Brassica rapa Bra018675 N 0.788
GSMUA_Achr10G22970_001 Musa acuminata GSMUA_Achr10G22970_001 I 0.788
Ciclev10033956m.g Citrus clementina Ciclev10033956m.g I 0.788
MDP0000319331 Malus domestica MDP0000319331 I 0.788
MDP0000822986 Malus domestica MDP0000822986 I 0.788
orange1.1g026556m.g Citrus sinensis orange1.1g026556m.g I 0.788
Thhalv10008781m.g Eutrema salsugineum Thhalv10008781m.g N 0.788
GLYMA13G40370 Glycine max GLYMA13G40370 I 0.778
POPTR_0008s04350 Populus trichocarpa POPTR_0008s04350 I 0.778
Solyc05g048740.2 Solanum lycopersicum Solyc05g048740.2 I 0.778
TCM_041094 Theobroma cacao TCM_041094 I 0.778
TCM_043081 Theobroma cacao TCM_043081 I 0.778
30111.m000703 Ricinus communis 30111.m000703 I 0.778
cassava40961.m1 Manihot esculenta cassava40961.m1 I 0.778
Eucgr.B02465 Eucalyptus grandis Eucgr.B02465 I 0.778
Gorai.001G129700 Gossypium raimondii Gorai.001G129700 I 0.778
Gorai.010G203800 Gossypium raimondii Gorai.010G203800 I 0.778
LBD1 Arabidopsis lyrata fgenesh1_pm.C_scaffold_1000623 N 0.768
GLYMA10G35760 Glycine max GLYMA10G35760 I 0.768
GLYMA11G15810 Glycine max GLYMA11G15810 N 0.768
GLYMA15G05030 Glycine max GLYMA15G05030 I 0.768
GLYMA20G31780 Glycine max GLYMA20G31780 I 0.768
MTR_2g093310 Medicago truncatula MTR_2g093310 I 0.768
POPTR_0010s22470 Populus trichocarpa POPTR_0010s22470 I 0.768
Cucsa.207400 Cucumis sativus Cucsa.207400 N 0.768
mgf019622m Mimulus guttatus mgf019622m N 0.768
Bostr.25219s0157 Boechera stricta Bostr.25219s0157 N 0.768
Bostr.27991s0074 Boechera stricta Bostr.27991s0074 N 0.768
Ciclev10029283m.g Citrus clementina Ciclev10029283m.g I 0.768
Gorai.004G012800 Gossypium raimondii Gorai.004G012800 I 0.768
Gorai.012G094200 Gossypium raimondii Gorai.012G094200 N 0.768
Lus10040373.g Linum usitatissimum Lus10040373.g I 0.768
orange1.1g047491m.g Citrus sinensis orange1.1g047491m.g I 0.768
SapurV1A.0023s0430 Salix purpurea SapurV1A.0023s0430 I 0.768
SapurV1A.0038s0110 Salix purpurea SapurV1A.0038s0110 I 0.768
chr3.CM0246.260.nc Lotus japonicus chr3.CM0246.260.nc N 0.768
CM1887.100.nc Lotus japonicus CM1887.100.nc I 0.768
Bo01039s010 Brassica oleracea Bo01039s010 N 0.758
Bo8g112780 Brassica oleracea Bo8g112780 N 0.758
Bra011942 Brassica rapa Bra011942 N 0.758
LBD11 Arabidopsis lyrata fgenesh2_kg.4__820__AT2G28500.1 N 0.758
MTR_1g095850 Medicago truncatula MTR_1g095850 I 0.758
PRUPE_ppa023989mg Prunus persica PRUPE_ppa023989mg I 0.758
Solyc11g072470.1 Solanum lycopersicum Solyc11g072470.1 I 0.758
Ca_04287 Cicer arietinum Ca_04287 I 0.758
Ca_14605 Cicer arietinum Ca_14605 I 0.758
Cla000556 Citrullus lanatus Cla000556 I 0.758
Pm018585 Prunus mume Pm018585 I 0.758
Aquca_027_00112 Aquilegia coerulea Aquca_027_00112 N 0.758
Cagra.9128s0007 Capsella grandiflora Cagra.9128s0007 N 0.758
Carubv10010390m.g Capsella rubella Carubv10010390m.g N 0.758
Carubv10023989m.g Capsella rubella Carubv10023989m.g N 0.758
Ciclev10032782m.g Citrus clementina Ciclev10032782m.g N 0.758
Eucgr.J01123 Eucalyptus grandis Eucgr.J01123 I 0.758
evm.TU.supercontig_53.26 Carica papaya evm.TU.supercontig_53.26 N 0.758
Gorai.006G120900 Gossypium raimondii Gorai.006G120900 I 0.758
PK23777.1 Cannabis sativa PK23777.1 I 0.758
PK27389.1 Cannabis sativa PK27389.1 I 0.758
LBD11 Arabidopsis thaliana AT2G28500 N 0.747
Bo4g165420 Brassica oleracea Bo4g165420 N 0.747
Bra031599 Brassica rapa Bra031599 N 0.747
Bra035698 Brassica rapa Bra035698 N 0.747
GSMUA_Achr6G33070_001 Musa acuminata GSMUA_Achr6G33070_001 I 0.747
GSMUA_Achr7G15500_001 Musa acuminata GSMUA_Achr7G15500_001 I 0.747
Si024430m.g Setaria italica Si024430m.g N 0.747
Solyc04g050010.1 Solanum lycopersicum Solyc04g050010.1 N 0.747
VIT_13s0019g03750 Vitis vinifera VIT_13s0019g03750 N 0.747
Ca_02507 Cicer arietinum Ca_02507 N 0.747
Cla020379 Citrullus lanatus Cla020379 I 0.747
cassava44959.m1 Manihot esculenta cassava44959.m1 N 0.747
Cucsa.052720 Cucumis sativus Cucsa.052720 I 0.747
Cagra.1671s0410 Capsella grandiflora Cagra.1671s0410 N 0.747
gene23226-v1.0-hybrid Fragaria vesca gene23226-v1.0-hybrid N 0.747
Gorai.013G002900 Gossypium raimondii Gorai.013G002900 I 0.747
Lus10011645.g Linum usitatissimum Lus10011645.g I 0.747
Lus10036130.g Linum usitatissimum Lus10036130.g I 0.747
MDP0000123013 Malus domestica MDP0000123013 I 0.747
MDP0000151784 Malus domestica MDP0000151784 I 0.747
MDP0000879799 Malus domestica MDP0000879799 N 0.747
Thhalv10017165m.g Eutrema salsugineum Thhalv10017165m.g N 0.747
cassava16668.m1 Manihot esculenta cassava16668.m1 N 0.745
AMTR_s00080p00153120 Amborella trichopoda AMTR_s00080p00153120 N 0.737
Bo3g040220 Brassica oleracea Bo3g040220 N 0.737
GRMZM2G145568 Zea mays GRMZM2G145568 N 0.737
MTR_4g060950 Medicago truncatula MTR_4g060950 I 0.737
OB05G11740 Oryza brachyantha OB05G11740 I 0.737
ORGLA05G0016500 Oryza glaberrima ORGLA05G0016500 N 0.737
Solyc06g005090.2 Solanum lycopersicum Solyc06g005090.2 I 0.737
mgf015666m Mimulus guttatus mgf015666m N 0.737
AC214648.3_FG005 Zea mays AC214648.3_FG005 I 0.727
GRMZM2G021095 Zea mays GRMZM2G021095 N 0.727
GSMUA_Achr8G09700_001 Musa acuminata GSMUA_Achr8G09700_001 N 0.727
PGSC0003DMG400004138 Solanum tuberosum PGSC0003DMG400004138 N 0.727
PGSC0003DMG400007503 Solanum tuberosum PGSC0003DMG400007503 I 0.727
PGSC0003DMG400025400 Solanum tuberosum PGSC0003DMG400025400 I 0.727
Sb01g038650 Sorghum bicolor Sb01g038650 N 0.727
Si037280m.g Setaria italica Si037280m.g N 0.727
VIT_06s0004g03350 Vitis vinifera VIT_06s0004g03350 I 0.727
Cucsa.166030 Cucumis sativus Cucsa.166030 N 0.727
Pavir.Ca00718 Panicum virgatum Pavir.Ca00718 I 0.727
Pavir.Ia03612 Panicum virgatum Pavir.Ia03612 N 0.727
Pavir.Ib01336 Panicum virgatum Pavir.Ib01336 N 0.727
Pavir.J04684 Panicum virgatum Pavir.J04684 I 0.727
Bra000491 Brassica rapa Bra000491 N 0.717
GSMUA_Achr3G17800_001 Musa acuminata GSMUA_Achr3G17800_001 N 0.717
LPERR05G01520 Leersia perrieri LPERR05G01520 N 0.717
VIT_06s0004g03330 Vitis vinifera VIT_06s0004g03330 I 0.717
VIT_13s0019g03830 Vitis vinifera VIT_13s0019g03830 N 0.717
F775_02335 Aegilops tauschii F775_02335 N 0.707
GRMZM2G165805 Zea mays GRMZM2G165805 N 0.707
MLOC_68570 Hordeum vulgare MLOC_68570 N 0.707
Sb09g002190 Sorghum bicolor Sb09g002190 I 0.707
Traes_1AS_26CB95294 Triticum aestivum Traes_1AS_26CB95294 N 0.707
Traes_1BS_CE38938A8 Triticum aestivum Traes_1BS_CE38938A8 N 0.707
Traes_1DS_A31FB6CB2 Triticum aestivum Traes_1DS_A31FB6CB2 N 0.707
VIT_13s0019g03760 Vitis vinifera VIT_13s0019g03760 N 0.707
Ciclev10032772m.g Citrus clementina Ciclev10032772m.g I 0.707
orange1.1g045080m.g Citrus sinensis orange1.1g045080m.g I 0.707