Carubv10023989m.g (Capsella rubella)
LOB

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03195 (DUF260) IPR004883 Carubv10023989m.g T246781_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
Carubv10023989m LOB 54 152

Links

Other LOB family TFs
Other Capsella rubella TFs

168 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Cagra.9128s0007 Capsella grandiflora Cagra.9128s0007 N 1.000
Bo01039s010 Brassica oleracea Bo01039s010 N 0.990
LBD11 Arabidopsis lyrata fgenesh2_kg.4__820__AT2G28500.1 N 0.990
LBD11 Arabidopsis thaliana AT2G28500 N 0.980
Bo4g165420 Brassica oleracea Bo4g165420 N 0.980
Bra035698 Brassica rapa Bra035698 N 0.980
Bostr.27991s0074 Boechera stricta Bostr.27991s0074 N 0.980
Thhalv10017165m.g Eutrema salsugineum Thhalv10017165m.g N 0.980
Bra011942 Brassica rapa Bra011942 N 0.970
Bo3g040220 Brassica oleracea Bo3g040220 N 0.960
LBD1 Arabidopsis lyrata fgenesh1_pm.C_scaffold_1000623 N 0.949
Bostr.25219s0157 Boechera stricta Bostr.25219s0157 N 0.949
Thhalv10008781m.g Eutrema salsugineum Thhalv10008781m.g N 0.949
Bra000491 Brassica rapa Bra000491 N 0.939
Carubv10010390m.g Capsella rubella Carubv10010390m.g N 0.929
Cagra.1671s0410 Capsella grandiflora Cagra.1671s0410 N 0.919
Bo5g008590 Brassica oleracea Bo5g008590 N 0.909
Bra018675 Brassica rapa Bra018675 N 0.909
GLYMA10G35760 Glycine max GLYMA10G35760 I 0.889
GLYMA13G40370 Glycine max GLYMA13G40370 I 0.889
GLYMA20G31780 Glycine max GLYMA20G31780 I 0.889
PRUPE_ppa011528mg Prunus persica PRUPE_ppa011528mg I 0.889
cassava11218.m1 Manihot esculenta cassava11218.m1 I 0.889
cassava819.valid.m1 Manihot esculenta cassava819.valid.m1 I 0.889
Ciclev10033956m.g Citrus clementina Ciclev10033956m.g I 0.889
orange1.1g026556m.g Citrus sinensis orange1.1g026556m.g I 0.889
CM1887.100.nc Lotus japonicus CM1887.100.nc I 0.889
Ciclev10029283m.g Citrus clementina Ciclev10029283m.g I 0.879
orange1.1g047491m.g Citrus sinensis orange1.1g047491m.g I 0.879
PK27389.1 Cannabis sativa PK27389.1 I 0.879
Bo8g112780 Brassica oleracea Bo8g112780 N 0.869
GLYMA11G15810 Glycine max GLYMA11G15810 N 0.869
GLYMA12G07650 Glycine max GLYMA12G07650 I 0.869
GLYMA15G05030 Glycine max GLYMA15G05030 I 0.869
MTR_1g095850 Medicago truncatula MTR_1g095850 I 0.869
MTR_2g093310 Medicago truncatula MTR_2g093310 I 0.869
MTR_4g060950 Medicago truncatula MTR_4g060950 I 0.869
PRUPE_ppa023989mg Prunus persica PRUPE_ppa023989mg I 0.869
TCM_041094 Theobroma cacao TCM_041094 I 0.869
TCM_043081 Theobroma cacao TCM_043081 I 0.869
VIT_06s0004g03350 Vitis vinifera VIT_06s0004g03350 I 0.869
VIT_13s0019g03700 Vitis vinifera VIT_13s0019g03700 I 0.869
Ca_04287 Cicer arietinum Ca_04287 I 0.869
Cla020379 Citrullus lanatus Cla020379 I 0.869
Pm000938 Prunus mume Pm000938 I 0.869
30111.m000703 Ricinus communis 30111.m000703 I 0.869
cassava40961.m1 Manihot esculenta cassava40961.m1 I 0.869
Cucsa.166030 Cucumis sativus Cucsa.166030 N 0.869
Eucgr.B02465 Eucalyptus grandis Eucgr.B02465 I 0.869
gene25294-v1.0-hybrid Fragaria vesca gene25294-v1.0-hybrid I 0.869
Gorai.001G129700 Gossypium raimondii Gorai.001G129700 I 0.869
Gorai.010G203800 Gossypium raimondii Gorai.010G203800 I 0.869
MDP0000319331 Malus domestica MDP0000319331 I 0.869
chr3.CM0246.260.nc Lotus japonicus chr3.CM0246.260.nc N 0.869
PGSC0003DMG400007503 Solanum tuberosum PGSC0003DMG400007503 I 0.859
Solyc11g072470.1 Solanum lycopersicum Solyc11g072470.1 I 0.859
VIT_06s0004g03330 Vitis vinifera VIT_06s0004g03330 I 0.859
Ca_14605 Cicer arietinum Ca_14605 I 0.859
Pm018585 Prunus mume Pm018585 I 0.859
Eucgr.J01123 Eucalyptus grandis Eucgr.J01123 I 0.859
SapurV1A.0038s0110 Salix purpurea SapurV1A.0038s0110 I 0.859
Bra031599 Brassica rapa Bra031599 N 0.848
POPTR_0008s04350 Populus trichocarpa POPTR_0008s04350 I 0.848
POPTR_0010s22470 Populus trichocarpa POPTR_0010s22470 I 0.848
Solyc05g048740.2 Solanum lycopersicum Solyc05g048740.2 I 0.848
Solyc06g005090.2 Solanum lycopersicum Solyc06g005090.2 I 0.848
evm.TU.supercontig_53.26 Carica papaya evm.TU.supercontig_53.26 N 0.848
Gorai.004G012800 Gossypium raimondii Gorai.004G012800 I 0.848
Gorai.006G120900 Gossypium raimondii Gorai.006G120900 I 0.848
Gorai.013G002900 Gossypium raimondii Gorai.013G002900 I 0.848
MDP0000218986 Malus domestica MDP0000218986 I 0.848
MDP0000318244 Malus domestica MDP0000318244 I 0.848
SapurV1A.0023s0430 Salix purpurea SapurV1A.0023s0430 I 0.848
PK23777.1 Cannabis sativa PK23777.1 I 0.848
PGSC0003DMG400025400 Solanum tuberosum PGSC0003DMG400025400 I 0.838
Cla000556 Citrullus lanatus Cla000556 I 0.838
Lus10011645.g Linum usitatissimum Lus10011645.g I 0.838
Lus10036130.g Linum usitatissimum Lus10036130.g I 0.838
Lus10040373.g Linum usitatissimum Lus10040373.g I 0.838
MDP0000879799 Malus domestica MDP0000879799 N 0.838
cassava16668.m1 Manihot esculenta cassava16668.m1 N 0.830
GSMUA_Achr10G22970_001 Musa acuminata GSMUA_Achr10G22970_001 I 0.828
GSMUA_Achr7G15500_001 Musa acuminata GSMUA_Achr7G15500_001 I 0.828
Solyc04g050010.1 Solanum lycopersicum Solyc04g050010.1 N 0.828
Cla005134 Citrullus lanatus Cla005134 N 0.828
cassava44959.m1 Manihot esculenta cassava44959.m1 N 0.828
Cucsa.052720 Cucumis sativus Cucsa.052720 I 0.828
Ciclev10032782m.g Citrus clementina Ciclev10032782m.g N 0.828
gene23226-v1.0-hybrid Fragaria vesca gene23226-v1.0-hybrid N 0.828
AMTR_s00080p00153120 Amborella trichopoda AMTR_s00080p00153120 N 0.818
Ca_02507 Cicer arietinum Ca_02507 N 0.818
mgf015666m Mimulus guttatus mgf015666m N 0.818
Gorai.012G094200 Gossypium raimondii Gorai.012G094200 N 0.818
MDP0000123013 Malus domestica MDP0000123013 I 0.818
MDP0000151784 Malus domestica MDP0000151784 I 0.818
GSMUA_Achr6G33070_001 Musa acuminata GSMUA_Achr6G33070_001 I 0.808
PGSC0003DMG400004138 Solanum tuberosum PGSC0003DMG400004138 N 0.808
mgf019622m Mimulus guttatus mgf019622m N 0.808
mgf022524m Mimulus guttatus mgf022524m N 0.808
MDP0000822986 Malus domestica MDP0000822986 I 0.808
Solyc06g075330.1 Solanum lycopersicum Solyc06g075330.1 N 0.807
Aquca_027_00112 Aquilegia coerulea Aquca_027_00112 N 0.798
LPERR05G01520 Leersia perrieri LPERR05G01520 N 0.788
VIT_13s0019g03750 Vitis vinifera VIT_13s0019g03750 N 0.788
Cucsa.207400 Cucumis sativus Cucsa.207400 N 0.788
GRMZM2G145568 Zea mays GRMZM2G145568 N 0.778
MLOC_68570 Hordeum vulgare MLOC_68570 N 0.778
OB05G11740 Oryza brachyantha OB05G11740 I 0.778
Traes_1AS_26CB95294 Triticum aestivum Traes_1AS_26CB95294 N 0.778
Traes_1BS_CE38938A8 Triticum aestivum Traes_1BS_CE38938A8 N 0.778
Traes_1DS_A31FB6CB2 Triticum aestivum Traes_1DS_A31FB6CB2 N 0.778
AC214648.3_FG005 Zea mays AC214648.3_FG005 I 0.768
GRMZM2G021095 Zea mays GRMZM2G021095 N 0.768
GSMUA_Achr8G09700_001 Musa acuminata GSMUA_Achr8G09700_001 N 0.768
ORGLA05G0016500 Oryza glaberrima ORGLA05G0016500 N 0.768
Sb01g038650 Sorghum bicolor Sb01g038650 N 0.768
Sb09g002190 Sorghum bicolor Sb09g002190 I 0.768
Pavir.Ia03612 Panicum virgatum Pavir.Ia03612 N 0.768
Pavir.Ib01336 Panicum virgatum Pavir.Ib01336 N 0.768
BGIOSGA010952 Oryza indica BGIOSGA010952 N 0.758
BGIOSGA038947 Oryza indica BGIOSGA038947 N 0.758
GRMZM2G165805 Zea mays GRMZM2G165805 N 0.758
OBART03G13260 Oryza barthii OBART03G13260 N 0.758
OGLUM03G13350 Oryza glumaepatula OGLUM03G13350 N 0.758
OMERI03G12370 Oryza meridionalis OMERI03G12370 N 0.758
ONIVA03G14510 Oryza nivara ONIVA03G14510 N 0.758
OPUNC03G12790 Oryza punctata OPUNC03G12790 N 0.758
ORGLA03G0128100 Oryza glaberrima ORGLA03G0128100 N 0.758
ORUFI03G13900 Oryza rufipogon ORUFI03G13900 N 0.758
OS03G0287400 Oryza sativa OS03G0287400 N 0.758
Si024430m.g Setaria italica Si024430m.g N 0.758
Si037280m.g Setaria italica Si037280m.g N 0.758
Cla005133 Citrullus lanatus Cla005133 N 0.758
Cucsa.207390 Cucumis sativus Cucsa.207390 N 0.758
Ciclev10032772m.g Citrus clementina Ciclev10032772m.g I 0.758
orange1.1g045080m.g Citrus sinensis orange1.1g045080m.g I 0.758
Pavir.Ca00718 Panicum virgatum Pavir.Ca00718 I 0.758
Pavir.J04684 Panicum virgatum Pavir.J04684 I 0.758
GSMUA_Achr4G16790_001 Musa acuminata GSMUA_Achr4G16790_001 N 0.747
LPERR03G11720 Leersia perrieri LPERR03G11720 N 0.747
cassava41200.m1 Manihot esculenta cassava41200.m1 N 0.739
BRADI1G65760 Brachypodium distachyon BRADI1G65760 N 0.737
GSMUA_Achr3G17800_001 Musa acuminata GSMUA_Achr3G17800_001 N 0.737
OB03G23270 Oryza brachyantha OB03G23270 N 0.737
PGSC0003DMG400025384 Solanum tuberosum PGSC0003DMG400025384 N 0.737
F775_02335 Aegilops tauschii F775_02335 N 0.727
Traes_4BL_97EDABD02 Triticum aestivum Traes_4BL_97EDABD02 N 0.727
VIT_13s0019g03710 Vitis vinifera VIT_13s0019g03710 N 0.727
VIT_13s0019g03830 Vitis vinifera VIT_13s0019g03830 N 0.727
mgf018189m Mimulus guttatus mgf018189m I 0.727
GSMUA_Achr9G04330_001 Musa acuminata GSMUA_Achr9G04330_001 N 0.717
MLOC_5148 Hordeum vulgare MLOC_5148 I 0.717
PRUPE_ppa012504mg Prunus persica PRUPE_ppa012504mg I 0.717
Traes_4AS_669BAF6C7 Triticum aestivum Traes_4AS_669BAF6C7 N 0.717
TRIUR3_11082 Triticum urartu TRIUR3_11082 I 0.717
VIT_13s0019g03720 Vitis vinifera VIT_13s0019g03720 N 0.717
F775_08326 Aegilops tauschii F775_08326 I 0.707
PGSC0003DMG400030456 Solanum tuberosum PGSC0003DMG400030456 I 0.707
Solyc06g082310.2 Solanum lycopersicum Solyc06g082310.2 I 0.707
Traes_5BL_CE4CF3B5C Triticum aestivum Traes_5BL_CE4CF3B5C I 0.707
VIT_13s0019g03760 Vitis vinifera VIT_13s0019g03760 N 0.707
VIT_13s0019g03820 Vitis vinifera VIT_13s0019g03820 N 0.707
Pm018982 Prunus mume Pm018982 I 0.707
Cucsa.239660 Cucumis sativus Cucsa.239660 I 0.707
Eucgr.F04424 Eucalyptus grandis Eucgr.F04424 I 0.707
gene21039-v1.0-hybrid Fragaria vesca gene21039-v1.0-hybrid I 0.707
MDP0000155138 Malus domestica MDP0000155138 I 0.707
SapurV1A.0085s0450 Salix purpurea SapurV1A.0085s0450 I 0.707