Bo3g040220 (Brassica oleracea)
LOB

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF03195 (DUF260) IPR004883 Bo3g040220 T244970_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
Bo3g040220.1 LOB 54 152

Links

Other LOB family TFs
Other Brassica oleracea TFs

156 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Bra000491 Brassica rapa Bra000491 N 0.980
Bo01039s010 Brassica oleracea Bo01039s010 N 0.970
LBD11 Arabidopsis lyrata fgenesh2_kg.4__820__AT2G28500.1 N 0.970
LBD11 Arabidopsis thaliana AT2G28500 N 0.960
Bo4g165420 Brassica oleracea Bo4g165420 N 0.960
Bra035698 Brassica rapa Bra035698 N 0.960
Bostr.27991s0074 Boechera stricta Bostr.27991s0074 N 0.960
Cagra.9128s0007 Capsella grandiflora Cagra.9128s0007 N 0.960
Carubv10023989m.g Capsella rubella Carubv10023989m.g N 0.960
Thhalv10017165m.g Eutrema salsugineum Thhalv10017165m.g N 0.960
Bra011942 Brassica rapa Bra011942 N 0.949
LBD1 Arabidopsis lyrata fgenesh1_pm.C_scaffold_1000623 N 0.929
Bostr.25219s0157 Boechera stricta Bostr.25219s0157 N 0.929
Thhalv10008781m.g Eutrema salsugineum Thhalv10008781m.g N 0.929
Carubv10010390m.g Capsella rubella Carubv10010390m.g N 0.909
Cagra.1671s0410 Capsella grandiflora Cagra.1671s0410 N 0.899
Bo5g008590 Brassica oleracea Bo5g008590 N 0.889
Bra018675 Brassica rapa Bra018675 N 0.889
GLYMA13G40370 Glycine max GLYMA13G40370 I 0.879
PRUPE_ppa011528mg Prunus persica PRUPE_ppa011528mg I 0.879
cassava11218.m1 Manihot esculenta cassava11218.m1 I 0.879
cassava819.valid.m1 Manihot esculenta cassava819.valid.m1 I 0.879
PK27389.1 Cannabis sativa PK27389.1 I 0.869
Bo8g112780 Brassica oleracea Bo8g112780 N 0.859
GLYMA10G35760 Glycine max GLYMA10G35760 I 0.859
GLYMA11G15810 Glycine max GLYMA11G15810 N 0.859
GLYMA12G07650 Glycine max GLYMA12G07650 I 0.859
GLYMA20G31780 Glycine max GLYMA20G31780 I 0.859
MTR_4g060950 Medicago truncatula MTR_4g060950 I 0.859
TCM_041094 Theobroma cacao TCM_041094 I 0.859
Pm000938 Prunus mume Pm000938 I 0.859
30111.m000703 Ricinus communis 30111.m000703 I 0.859
Ciclev10029283m.g Citrus clementina Ciclev10029283m.g I 0.859
Ciclev10033956m.g Citrus clementina Ciclev10033956m.g I 0.859
orange1.1g026556m.g Citrus sinensis orange1.1g026556m.g I 0.859
orange1.1g047491m.g Citrus sinensis orange1.1g047491m.g I 0.859
chr3.CM0246.260.nc Lotus japonicus chr3.CM0246.260.nc N 0.859
CM1887.100.nc Lotus japonicus CM1887.100.nc I 0.859
Gorai.012G185900 Gossypium raimondii Gorai.012G185900 N 0.849
GLYMA15G05030 Glycine max GLYMA15G05030 I 0.848
MTR_2g093310 Medicago truncatula MTR_2g093310 I 0.848
VIT_06s0004g03330 Vitis vinifera VIT_06s0004g03330 I 0.848
VIT_06s0004g03350 Vitis vinifera VIT_06s0004g03350 I 0.848
Ca_14605 Cicer arietinum Ca_14605 I 0.848
cassava40961.m1 Manihot esculenta cassava40961.m1 I 0.848
Eucgr.B02465 Eucalyptus grandis Eucgr.B02465 I 0.848
gene25294-v1.0-hybrid Fragaria vesca gene25294-v1.0-hybrid I 0.848
Gorai.001G129700 Gossypium raimondii Gorai.001G129700 I 0.848
Gorai.013G002900 Gossypium raimondii Gorai.013G002900 I 0.848
MDP0000319331 Malus domestica MDP0000319331 I 0.848
Bra031599 Brassica rapa Bra031599 N 0.838
MTR_1g095850 Medicago truncatula MTR_1g095850 I 0.838
PGSC0003DMG400007503 Solanum tuberosum PGSC0003DMG400007503 I 0.838
PRUPE_ppa023989mg Prunus persica PRUPE_ppa023989mg I 0.838
TCM_043081 Theobroma cacao TCM_043081 I 0.838
VIT_13s0019g03700 Vitis vinifera VIT_13s0019g03700 I 0.838
Ca_04287 Cicer arietinum Ca_04287 I 0.838
Cla000556 Citrullus lanatus Cla000556 I 0.838
Cla020379 Citrullus lanatus Cla020379 I 0.838
Cucsa.166030 Cucumis sativus Cucsa.166030 N 0.838
Gorai.004G012800 Gossypium raimondii Gorai.004G012800 I 0.838
Gorai.006G120900 Gossypium raimondii Gorai.006G120900 I 0.838
Gorai.010G203800 Gossypium raimondii Gorai.010G203800 I 0.838
Lus10011645.g Linum usitatissimum Lus10011645.g I 0.838
Lus10036130.g Linum usitatissimum Lus10036130.g I 0.838
MDP0000218986 Malus domestica MDP0000218986 I 0.838
MDP0000318244 Malus domestica MDP0000318244 I 0.838
Solyc06g005090.2 Solanum lycopersicum Solyc06g005090.2 I 0.828
Solyc11g072470.1 Solanum lycopersicum Solyc11g072470.1 I 0.828
Pm018585 Prunus mume Pm018585 I 0.828
Cucsa.052720 Cucumis sativus Cucsa.052720 I 0.828
Eucgr.J01123 Eucalyptus grandis Eucgr.J01123 I 0.828
gene23226-v1.0-hybrid Fragaria vesca gene23226-v1.0-hybrid N 0.828
SapurV1A.0038s0110 Salix purpurea SapurV1A.0038s0110 I 0.828
PGSC0003DMG400025400 Solanum tuberosum PGSC0003DMG400025400 I 0.818
POPTR_0008s04350 Populus trichocarpa POPTR_0008s04350 I 0.818
POPTR_0010s22470 Populus trichocarpa POPTR_0010s22470 I 0.818
Solyc05g048740.2 Solanum lycopersicum Solyc05g048740.2 I 0.818
evm.TU.supercontig_53.26 Carica papaya evm.TU.supercontig_53.26 N 0.818
Lus10040373.g Linum usitatissimum Lus10040373.g I 0.818
MDP0000879799 Malus domestica MDP0000879799 N 0.818
SapurV1A.0023s0430 Salix purpurea SapurV1A.0023s0430 I 0.818
PK23777.1 Cannabis sativa PK23777.1 I 0.818
cassava16668.m1 Manihot esculenta cassava16668.m1 N 0.809
GSMUA_Achr10G22970_001 Musa acuminata GSMUA_Achr10G22970_001 I 0.808
Ca_02507 Cicer arietinum Ca_02507 N 0.808
Cla005134 Citrullus lanatus Cla005134 N 0.808
cassava44959.m1 Manihot esculenta cassava44959.m1 N 0.808
Ciclev10032782m.g Citrus clementina Ciclev10032782m.g N 0.808
Gorai.012G094200 Gossypium raimondii Gorai.012G094200 N 0.808
Eucgr.E02410 Eucalyptus grandis Eucgr.E02410 N 0.800
GSMUA_Achr7G15500_001 Musa acuminata GSMUA_Achr7G15500_001 I 0.798
Solyc04g050010.1 Solanum lycopersicum Solyc04g050010.1 N 0.798
mgf015666m Mimulus guttatus mgf015666m N 0.798
mgf019622m Mimulus guttatus mgf019622m N 0.798
MDP0000123013 Malus domestica MDP0000123013 I 0.798
MDP0000151784 Malus domestica MDP0000151784 I 0.798
AMTR_s00080p00153120 Amborella trichopoda AMTR_s00080p00153120 N 0.788
GSMUA_Achr6G33070_001 Musa acuminata GSMUA_Achr6G33070_001 I 0.788
MDP0000822986 Malus domestica MDP0000822986 I 0.788
Solyc06g075330.1 Solanum lycopersicum Solyc06g075330.1 N 0.784
PGSC0003DMG400004138 Solanum tuberosum PGSC0003DMG400004138 N 0.778
VIT_13s0019g03750 Vitis vinifera VIT_13s0019g03750 N 0.778
mgf022524m Mimulus guttatus mgf022524m N 0.778
Aquca_027_00112 Aquilegia coerulea Aquca_027_00112 N 0.778
OBART05G01640 Oryza barthii OBART05G01640 N 0.769
GRMZM2G145568 Zea mays GRMZM2G145568 N 0.768
GSMUA_Achr8G09700_001 Musa acuminata GSMUA_Achr8G09700_001 N 0.768
LPERR05G01520 Leersia perrieri LPERR05G01520 N 0.768
MLOC_68570 Hordeum vulgare MLOC_68570 N 0.768
Traes_1AS_26CB95294 Triticum aestivum Traes_1AS_26CB95294 N 0.768
Traes_1BS_CE38938A8 Triticum aestivum Traes_1BS_CE38938A8 N 0.768
Traes_1DS_A31FB6CB2 Triticum aestivum Traes_1DS_A31FB6CB2 N 0.768
Cucsa.207400 Cucumis sativus Cucsa.207400 N 0.768
OPUNC05G01610 Oryza punctata OPUNC05G01610 N 0.765
AC214648.3_FG005 Zea mays AC214648.3_FG005 I 0.758
GRMZM2G021095 Zea mays GRMZM2G021095 N 0.758
OB05G11740 Oryza brachyantha OB05G11740 I 0.758
Sb01g038650 Sorghum bicolor Sb01g038650 N 0.758
Sb09g002190 Sorghum bicolor Sb09g002190 I 0.758
Ciclev10032772m.g Citrus clementina Ciclev10032772m.g I 0.758
orange1.1g045080m.g Citrus sinensis orange1.1g045080m.g I 0.758
Pavir.Ia03612 Panicum virgatum Pavir.Ia03612 N 0.758
Pavir.Ib01336 Panicum virgatum Pavir.Ib01336 N 0.758
GRMZM2G165805 Zea mays GRMZM2G165805 N 0.747
LPERR03G11720 Leersia perrieri LPERR03G11720 N 0.747
ORGLA05G0016500 Oryza glaberrima ORGLA05G0016500 N 0.747
Si024430m.g Setaria italica Si024430m.g N 0.747
Si037280m.g Setaria italica Si037280m.g N 0.747
Pavir.Ca00718 Panicum virgatum Pavir.Ca00718 I 0.747
Pavir.J04684 Panicum virgatum Pavir.J04684 I 0.747
BGIOSGA010952 Oryza indica BGIOSGA010952 N 0.737
BGIOSGA038947 Oryza indica BGIOSGA038947 N 0.737
OBART03G13260 Oryza barthii OBART03G13260 N 0.737
OGLUM03G13350 Oryza glumaepatula OGLUM03G13350 N 0.737
OMERI03G12370 Oryza meridionalis OMERI03G12370 N 0.737
ONIVA03G14510 Oryza nivara ONIVA03G14510 N 0.737
OPUNC03G12790 Oryza punctata OPUNC03G12790 N 0.737
ORGLA03G0128100 Oryza glaberrima ORGLA03G0128100 N 0.737
ORUFI03G13900 Oryza rufipogon ORUFI03G13900 N 0.737
OS03G0287400 Oryza sativa OS03G0287400 N 0.737
Cla005133 Citrullus lanatus Cla005133 N 0.737
Cucsa.207390 Cucumis sativus Cucsa.207390 N 0.737
BRADI1G65760 Brachypodium distachyon BRADI1G65760 N 0.727
GSMUA_Achr4G16790_001 Musa acuminata GSMUA_Achr4G16790_001 N 0.727
OB03G23270 Oryza brachyantha OB03G23270 N 0.727
VIT_13s0019g03710 Vitis vinifera VIT_13s0019g03710 N 0.727
VIT_13s0019g03720 Vitis vinifera VIT_13s0019g03720 N 0.727
VIT_13s0019g03830 Vitis vinifera VIT_13s0019g03830 N 0.727
F775_02335 Aegilops tauschii F775_02335 N 0.717
GSMUA_Achr3G17800_001 Musa acuminata GSMUA_Achr3G17800_001 N 0.717
Traes_4BL_97EDABD02 Triticum aestivum Traes_4BL_97EDABD02 N 0.717
cassava41200.m1 Manihot esculenta cassava41200.m1 N 0.717
PGSC0003DMG400025384 Solanum tuberosum PGSC0003DMG400025384 N 0.707
Traes_4AS_669BAF6C7 Triticum aestivum Traes_4AS_669BAF6C7 N 0.707
mgf018189m Mimulus guttatus mgf018189m I 0.707