evm.TU.contig_40341.1 (Carica papaya)
LOB

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03195 (DUF260) IPR004883 evm.TU.contig_40341.1 T246868_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
LBD4
M02261_2.00 		Arabidopsis thaliana
VDNVCGSNNN
NNNSCGBNHB		 PBM
Weirauch et al.(2014)
pTH7515 		0.744 0.744
gw1.238.28.1
M02262_2.00 		Physcomitrella patens
NNNNNVNGSN
NSCNBNNNNN		 PBM
Weirauch et al.(2014)
pTH8459 		0.718 0.718
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
evm.TU.contig_40341.1 LOB 1 39

Links

Other LOB family TFs
Other Carica papaya TFs

93 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Gorai.004G012800 Gossypium raimondii Gorai.004G012800 I 1.000
PRUPE_ppa011528mg Prunus persica PRUPE_ppa011528mg I 0.974
cassava11218.m1 Manihot esculenta cassava11218.m1 I 0.974
GLYMA11G15810 Glycine max GLYMA11G15810 N 0.974
GLYMA12G07650 Glycine max GLYMA12G07650 I 0.974
cassava819.valid.m1 Manihot esculenta cassava819.valid.m1 I 0.974
Cla000556 Citrullus lanatus Cla000556 I 0.949
VIT_06s0004g03350 Vitis vinifera VIT_06s0004g03350 I 0.923
MTR_1g095850 Medicago truncatula MTR_1g095850 I 0.923
PGSC0003DMG400025400 Solanum tuberosum PGSC0003DMG400025400 I 0.923
VIT_13s0019g03700 Vitis vinifera VIT_13s0019g03700 I 0.923
Solyc06g005090.2 Solanum lycopersicum Solyc06g005090.2 I 0.923
Ca_04287 Cicer arietinum Ca_04287 I 0.923
cassava44959.m1 Manihot esculenta cassava44959.m1 N 0.897
POPTR_0010s22470 Populus trichocarpa POPTR_0010s22470 I 0.897
Sb09g002190 Sorghum bicolor Sb09g002190 I 0.897
SapurV1A.0023s0430 Salix purpurea SapurV1A.0023s0430 I 0.897
PGSC0003DMG400027372 Solanum tuberosum PGSC0003DMG400027372 I 0.872
ONIVA05G01850 Oryza nivara ONIVA05G01850 I 0.872
Pm018585 Prunus mume Pm018585 I 0.872
Ca_02507 Cicer arietinum Ca_02507 N 0.872
Lus10040373.g Linum usitatissimum Lus10040373.g I 0.872
LjSGA_079940.1 Lotus japonicus LjSGA_079940.1 N 0.872
Carubv10010390m.g Capsella rubella Carubv10010390m.g N 0.846
Lus10036130.g Linum usitatissimum Lus10036130.g I 0.846
Thhalv10008781m.g Eutrema salsugineum Thhalv10008781m.g N 0.846
Lus10011645.g Linum usitatissimum Lus10011645.g I 0.846
Bra018675 Brassica rapa Bra018675 N 0.821
PDK_20s1595351g001 Phoenix dactylifera PDK_20s1595351g001 N 0.821
PGSC0003DMG400025384 Solanum tuberosum PGSC0003DMG400025384 N 0.821
Bo5g008590 Brassica oleracea Bo5g008590 N 0.821
Ciclev10032782m.g Citrus clementina Ciclev10032782m.g N 0.821
Solyc04g050010.1 Solanum lycopersicum Solyc04g050010.1 N 0.795
LBD11 Arabidopsis thaliana AT2G28500 N 0.795
Pavir.Ib01336 Panicum virgatum Pavir.Ib01336 N 0.795
Thhalv10017165m.g Eutrema salsugineum Thhalv10017165m.g N 0.795
Lus10031769.g Linum usitatissimum Lus10031769.g I 0.795
GSMUA_Achr3G17800_001 Musa acuminata GSMUA_Achr3G17800_001 N 0.795
OLONG_017777 Oryza longistaminata OLONG_017777 N 0.769
Bra035698 Brassica rapa Bra035698 N 0.769
Ca_13388 Cicer arietinum Ca_13388 I 0.744
Gorai.011G290800 Gossypium raimondii Gorai.011G290800 I 0.744
Pavir.Ib04170 Panicum virgatum Pavir.Ib04170 I 0.744
PK09808.1 Cannabis sativa PK09808.1 I 0.744
Pavir.Ia01095 Panicum virgatum Pavir.Ia01095 I 0.744
orange1.1g044340m.g Citrus sinensis orange1.1g044340m.g I 0.744
Ciclev10006113m.g Citrus clementina Ciclev10006113m.g I 0.744
gene21039-v1.0-hybrid Fragaria vesca gene21039-v1.0-hybrid I 0.744
Cucsa.239660 Cucumis sativus Cucsa.239660 I 0.744
VIT_13s0019g03830 Vitis vinifera VIT_13s0019g03830 N 0.744
MTR_5g083230 Medicago truncatula MTR_5g083230 I 0.744
POPTR_0007s08290 Populus trichocarpa POPTR_0007s08290 I 0.744
GLYMA08G17990 Glycine max GLYMA08G17990 I 0.744
F775_02335 Aegilops tauschii F775_02335 N 0.744
BRADI4G44850 Brachypodium distachyon BRADI4G44850 I 0.744
VIT_13s0019g03820 Vitis vinifera VIT_13s0019g03820 N 0.744
Sb01g012810 Sorghum bicolor Sb01g012810 I 0.744
Bra031599 Brassica rapa Bra031599 N 0.744
VIT_13s0019g03780 Vitis vinifera VIT_13s0019g03780 N 0.744
MDP0000284409 Malus domestica MDP0000284409 I 0.718
MDP0000268890 Malus domestica MDP0000268890 I 0.718
OGLUM04G05130 Oryza glumaepatula OGLUM04G05130 I 0.718
OMERI03G24920 Oryza meridionalis OMERI03G24920 I 0.718
MDP0000121203 Malus domestica MDP0000121203 I 0.718
MDP0000265429 Malus domestica MDP0000265429 I 0.718
GLYMA15G13410 Glycine max GLYMA15G13410 I 0.718
GLYMA07G35000 Glycine max GLYMA07G35000 I 0.718
BGIOSGA013249 Oryza indica BGIOSGA013249 I 0.718
SapurV1A.0061s0670 Salix purpurea SapurV1A.0061s0670 I 0.718
SapurV1A.0059s0540 Salix purpurea SapurV1A.0059s0540 I 0.718
GRMZM2G044150 Zea mays GRMZM2G044150 I 0.718
ONIVA03G29300 Oryza nivara ONIVA03G29300 I 0.718
MTR_3g071590 Medicago truncatula MTR_3g071590 I 0.718
PGSC0003DMG400023939 Solanum tuberosum PGSC0003DMG400023939 I 0.718
Solyc11g045530.1 Solanum lycopersicum Solyc11g045530.1 I 0.718
Si024229m.g Setaria italica Si024229m.g I 0.718
mgf018189m Mimulus guttatus mgf018189m I 0.718
Traes_4AS_669BAF6C7 Triticum aestivum Traes_4AS_669BAF6C7 N 0.718
LBD4 Vitis vinifera VIT_00s0125g00290 I 0.718
Pm010668 Prunus mume Pm010668 I 0.718
Pm011040 Prunus mume Pm011040 I 0.718
30169.m006340 Ricinus communis 30169.m006340 I 0.718
mgf022958m Mimulus guttatus mgf022958m I 0.718
Aquca_118_00035 Aquilegia coerulea Aquca_118_00035 I 0.718
PRUPE_ppa012253mg Prunus persica PRUPE_ppa012253mg I 0.718
VIT_13s0019g03840 Vitis vinifera VIT_13s0019g03840 N 0.718
ORUFI03G29410 Oryza rufipogon ORUFI03G29410 I 0.718
gene20083-v1.0-hybrid Fragaria vesca gene20083-v1.0-hybrid I 0.718
Eucgr.B03991 Eucalyptus grandis Eucgr.B03991 I 0.718
Sb09g016240 Sorghum bicolor Sb09g016240 I 0.718
Ciclev10029962m.g Citrus clementina Ciclev10029962m.g I 0.718
PRUPE_ppa012322mg Prunus persica PRUPE_ppa012322mg I 0.718
Lus10018275.g Linum usitatissimum Lus10018275.g I 0.718