CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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POPTR_0008s02730
(
Populus trichocarpa
)
MADF
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF10545 (MADF_DNA_bdg)
IPR006578
POPTR_0008s02730
T249674_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
AT3G10030
M01258_2.00
Arabidopsis thaliana
NRMCGTTAWNN
NNWTAACGKYN
PBM
Lambert et al.(2019)
pTH11538
0.885
0.658
AT3G10030
M06971_2.00
Arabidopsis thaliana
HRHCKCCGTTANND
HNNTAACGGMGDYD
Dap-seq
OMalley et al.(2016)
AT3G10030_col_a
0.885
0.658
AT3G10030
M06972_2.00
Arabidopsis thaliana
HWRHMKCCGTTAAHD
HDTTAACGGMKDYWD
Dap-seq
OMalley et al.(2016)
AT3G10030_colamp_a
0.885
0.658
PK04914.1
M01262_2.00
Cannabis sativa
DCCGTYAN
NTRACGGH
PBM
Lambert et al.(2019)
pTH10098
0.844
0.630
For this family, TFs with SR scores >
0.812
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
POPTR_0008s02730.1
MADF
85
165
AAISCLLEAYTEKYNQLNRGNLRGRDWEEVAEAVSERGGSNKKSVEQCKNKIDNLKKRYKVELQRISGSGSSWHWFKHIEA
Links
Other
MADF
family TFs
Other
Populus trichocarpa
TFs
66 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
AT3G10030
Arabidopsis thaliana
AT3G10030
D
0.885
PK04914.1
Cannabis sativa
PK04914.1
D
0.844
Carubv10015256m.g
Capsella rubella
Carubv10015256m.g
I
0.885
TRIUR3_22240
Triticum urartu
TRIUR3_22240
I
0.912
VIT_08s0007g04160
Vitis vinifera
VIT_08s0007g04160
I
0.890
VIT_13s0074g00240
Vitis vinifera
VIT_13s0074g00240
I
0.941
Ca_20148
Cicer arietinum
Ca_20148
I
0.889
Cla018015
Citrullus lanatus
Cla018015
I
0.871
Pm026265
Prunus mume
Pm026265
I
0.858
28077.m000081
Ricinus communis
28077.m000081
I
0.944
29815.m000504
Ricinus communis
29815.m000504
I
0.871
cassava30771.valid.m1
Manihot esculenta
cassava30771.valid.m1
I
0.871
Cucsa.378670
Cucumis sativus
Cucsa.378670
I
0.871
mgf008067m
Mimulus guttatus
mgf008067m
I
0.903
Aquca_009_01006
Aquilegia coerulea
Aquca_009_01006
I
0.880
Aquca_019_00072
Aquilegia coerulea
Aquca_019_00072
I
0.905
Bostr.22252s0062
Boechera stricta
Bostr.22252s0062
I
0.885
Cagra.4686s0014
Capsella grandiflora
Cagra.4686s0014
I
0.885
Traes_2BL_83EDE2CBB
Triticum aestivum
Traes_2BL_83EDE2CBB
I
0.912
Ciclev10011433m.g
Citrus clementina
Ciclev10011433m.g
I
0.869
Eucgr.A01571
Eucalyptus grandis
Eucgr.A01571
I
0.889
evm.TU.supercontig_128.55
Carica papaya
evm.TU.supercontig_128.55
I
0.915
gene30101-v1.0-hybrid
Fragaria vesca
gene30101-v1.0-hybrid
I
0.885
Gorai.007G371500
Gossypium raimondii
Gorai.007G371500
I
0.863
MDP0000201016
Malus domestica
MDP0000201016
I
0.940
MDP0000399495
Malus domestica
MDP0000399495
I
0.940
MDP0000415733
Malus domestica
MDP0000415733
I
0.940
Pavir.Gb01778
Panicum virgatum
Pavir.Gb01778
I
0.889
Pavir.J13370
Panicum virgatum
Pavir.J13370
I
0.897
SapurV1A.0226s0070
Salix purpurea
SapurV1A.0226s0070
I
0.896
SapurV1A.0243s0300
Salix purpurea
SapurV1A.0243s0300
I
0.970
SapurV1A.0439s0120
Salix purpurea
SapurV1A.0439s0120
I
0.970
Thhalv10020471m.g
Eutrema salsugineum
Thhalv10020471m.g
I
0.885
AMTR_s00006p00265300
Amborella trichopoda
AMTR_s00006p00265300
I
0.871
OB04G18670
Oryza brachyantha
OB04G18670
I
0.883
Bo5g137800
Brassica oleracea
Bo5g137800
I
0.865
Bra029812
Brassica rapa
Bra029812
I
0.865
BRADI5G08980
Brachypodium distachyon
BRADI5G08980
I
0.899
F775_31501
Aegilops tauschii
F775_31501
I
0.912
fgenesh1_pm.C_scaffold_3000820
Arabidopsis lyrata
fgenesh1_pm.C_scaffold_3000820
I
0.884
GLYMA10G07490
Glycine max
GLYMA10G07490
I
0.890
GLYMA10G34520
Glycine max
GLYMA10G34520
I
0.947
GLYMA13G21371
Glycine max
GLYMA13G21371
I
0.890
GLYMA20G33031
Glycine max
GLYMA20G33031
I
0.889
GRMZM2G002978
Zea mays
GRMZM2G002978
I
0.905
GSMUA_Achr2G20220_001
Musa acuminata
GSMUA_Achr2G20220_001
I
0.894
GSMUA_Achr6G13420_001
Musa acuminata
GSMUA_Achr6G13420_001
I
0.883
LPERR04G08300
Leersia perrieri
LPERR04G08300
I
0.900
MLOC_28975
Hordeum vulgare
MLOC_28975
I
0.904
MTR_1g061600
Medicago truncatula
MTR_1g061600
I
0.889
BGIOSGA016339
Oryza indica
BGIOSGA016339
I
0.900
OGLUM04G11230
Oryza glumaepatula
OGLUM04G11230
I
0.900
OMERI04G10080
Oryza meridionalis
OMERI04G10080
I
0.889
ONIVA04G09510
Oryza nivara
ONIVA04G09510
I
0.900
OPUNC04G09570
Oryza punctata
OPUNC04G09570
I
0.900
PGSC0003DMG400002727
Solanum tuberosum
PGSC0003DMG400002727
I
0.890
POPTR_0006s11850
Populus trichocarpa
POPTR_0006s11850
I
0.896
POPTR_0010s23970
Populus trichocarpa
POPTR_0010s23970
I
0.968
PRUPE_ppa004154mg
Prunus persica
PRUPE_ppa004154mg
I
0.858
PRUPE_ppa022998mg
Prunus persica
PRUPE_ppa022998mg
I
0.942
Sb06g015280
Sorghum bicolor
Sb06g015280
I
0.899
Si009787m.g
Setaria italica
Si009787m.g
I
0.904
Solyc09g008850.2
Solanum lycopersicum
Solyc09g008850.2
I
0.890
TCM_022397
Theobroma cacao
TCM_022397
I
0.840
TCM_043551
Theobroma cacao
TCM_043551
I
0.935
Traes_2AL_246006E77
Triticum aestivum
Traes_2AL_246006E77
I
0.912