SRF (Cavia porcellus)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00319 (SRF-TF) IPR002100 ENSCPOG00000022327 T253608_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
srfA
M02283_2.00 		Dictyostelium discoideum
MYDWWWNNRD
HYNNWWWHRK		 PBM
Weirauch et al.(2014)
pTH5539 		0.963 0.963
Srf
M00178_2.00 		Mus musculus
NNDDWWHHNN
NNDDWWHHNN		 PBM
Badis et al.(2009)
Srf_3509 		0.963 0.963
SRF
M03341_2.00 		Homo sapiens
DCCWTATATGGT
ACCATATAWGGH		 SELEX
Jolma et al.(2013)
SRF_1 		0.963 0.963
SRF
M03342_2.00 		Homo sapiens
TKHCCWTATATGGKMA
TKMCCATATAWGGDMA		 SELEX
Jolma et al.(2013)
SRF_2 		0.963 0.963
SRF
M05553_2.00 		Homo sapiens
CCNTANAWGG
CCWTNTANGG		 SELEX
Yin et al.(2017)
SRF_eDBD_HT-SELEX 		0.963 0.963
SRF
M07981_2.00 		Homo sapiens
NNNWDNCCAWAWAWGGNVD
HBNCCWTWTWTGGNHWNNN		 ChIP-seq
Gerstein et al.(2012)
GM12878_SRF_HudsonAlpha 		0.963 0.963
SRF
M07982_2.00 		Homo sapiens
CCAWATAAGGNMAD
HTKNCCTTATWTGG		 ChIP-seq
Gerstein et al.(2012)
H1-hESC_SRF_HudsonAlpha 		0.963 0.963
SRF
M07983_2.00 		Homo sapiens
NNWNNCCAWAWAWGGNVD
HBNCCWTWTWTGGNNWNN		 ChIP-seq
Gerstein et al.(2012)
HepG2_SRF_HudsonAlpha 		0.963 0.963
SRF
M07984_2.00 		Homo sapiens
GNCCAWATADGGHMANN
NNTKDCCHTATWTGGNC		 ChIP-seq
Gerstein et al.(2012)
K562_SRF_HudsonAlpha 		0.963 0.963
SRF
M09249_2.00 		Homo sapiens
HNWBVCCAWAWAWGGNRR
YYNCCWTWTWTGGBVWND		 Misc
Kulakovskiy et al.(2013)
SRF_HUMAN.H11MO.0.A 		0.963 0.963
Srf
M09254_2.00 		Mus musculus
NWDVCCAWAWAWGGVMR
YKBCCWTWTWTGGBHWN		 Misc
Kulakovskiy et al.(2013)
SRF_MOUSE.H11MO.0.A 		0.963 0.963
Srf
M09598_2.00 		Mus musculus
CCWWATWWGGNH
DNCCWWATWWGG		 Misc
Heinz et al.(2010)
PUER-Srf_Sullivan_et_al. 		0.963 0.963
SRF
M10947_2.00 		Homo sapiens
MNBWCCWTATAWGGGCAT
ATGCCCWTATAWGGWVNK		 Transfac
Matys et al.(2006)
V$SRF_01 		0.963 0.963
SRF
M10948_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SRF_02 		0.963 0.963
SRF
M10949_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SRF_03 		0.963 0.963
SRF
M10950_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SRF_09 		0.963 0.963
SRF
M10951_2.00 		Homo sapiens
DCCWTATAWGGVSHB
VDSBCCWTATAWGGH		 Transfac
Matys et al.(2006)
V$SRF_C 		0.963 0.963
SRF
M10952_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SRF_Q3 		0.963 0.963
SRF
M10953_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SRF_Q4 		0.963 0.963
SRF
M10954_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SRF_Q5_01 		0.963 0.963
SRF
M10955_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SRF_Q5_02 		0.963 0.963
SRF
M10956_2.00 		Homo sapiens
BNCCAWATAWGGVN
NBCCWTATWTGGNV		 Transfac
Matys et al.(2006)
V$SRF_Q6 		0.963 0.963
SRF
M05554_2.00 		Homo sapiens
CCNTAYAWGG
CCWTRTANGG		 SELEX
Yin et al.(2017)
SRF_eDBD_Methyl-HT-SELEX 		0.963 0.963
bs
M03915_2.00 		Drosophila melanogaster
NCCWTATAWGGN
NCCWTATAWGGN		 SELEX
Nitta et al.(2015)
bs_1 		0.926 0.926
bs
M03916_2.00 		Drosophila melanogaster
NCCWTAHAWGGH
DCCWTDTAWGGN		 SELEX
Nitta et al.(2015)
bs_2 		0.926 0.926
unc-120
M00684_2.00 		Caenorhabditis elegans
CHWAWWDGG
CCHWWTWDG		 PBM
Narasimhan et al.(2015)
pTH10822 		0.852 0.852
MCM1
M01558_2.00 		Saccharomyces cerevisiae
YNNWWNNRGN
NCYNNWWNNR		 PBM
Zhu et al.(2009)
Mcm1 		0.815 0.815
MCM1
M08589_2.00 		Saccharomyces cerevisiae
HNHTWCCBDWWHVGGAHDHN
NDHDTCCBDWWHVGGWADND		 Misc
DeBoer et al.(2011)
YMR043W_831 		0.815 0.815
MCM1
M10990_2.00 		Saccharomyces cerevisiae
WNDCCYAAWNNGGWMW
WKWCCNNWTTRGGHNW		 Transfac
Matys et al.(2006)
F$MCM1_01 		0.815 0.815
MCM1
M10991_2.00 		Saccharomyces cerevisiae Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
F$MCM1_02 		0.815 0.815
MCM1
M10992_2.00 		Saccharomyces cerevisiae Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
F$MCM1_Q6 		0.815 0.815
MCM1
M08458_2.00 		Saccharomyces cerevisiae
TTCCYRAWNNGG
CCNNWTYRGGAA		 COMPILED
Mathelier et al.(2014)
MA0331.1 		0.815 0.815
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSCPOP00000015471 MADS box 16 42

Links

Other MADS box family TFs
Other Cavia porcellus TFs

179 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
bs Drosophila melanogaster FBgn0004101 D 0.926
CpipJ_CPIJ008335 Culex pipiens CpipJ_CPIJ008335 I 0.758
RO3G_00948 Rhizopus oryzae RO3G_00948 I 0.889
RO3G_06121 Rhizopus oryzae RO3G_06121 I 0.889
RO3G_07165 Rhizopus oryzae RO3G_07165 I 0.828
RO3G_11614 Rhizopus oryzae RO3G_11614 I 0.889
RO3G_15079 Rhizopus oryzae RO3G_15079 I 0.889
SNOG_07763 Stagonospora nodorum SNOG_07763 I 0.793
SPPG_06208 Spizellomyces punctatus SPPG_06208 I 0.963
AAEL008720 Aedes aegypti AAEL008720 I 0.926
AAEL010926 Aedes aegypti AAEL010926 I 0.926
ACEP12187 Atta cephalotes ACEP12187 I 0.926
ACYPI002973 Acyrthosiphon pisum ACYPI002973 I 0.926
ADAC008363 Anopheles darlingi ADAC008363 I 0.926
AGAP010512 Anopheles gambiae AGAP010512 I 0.926
AWRI1499_3592 Brettanomyces bruxellensis AWRI1499_3592 I 0.793
Bcin09g06140 Botrytis cinerea Bcin09g06140 I 0.852
BGHDH14_bgh04421 Blumeria graminis BGHDH14_bgh04421 I 0.852
BGIBMGA001384 Bombyx mori BGIBMGA001384 I 0.862
CAGL0I10769g Candida glabrata CAGL0I10769g I 0.778
CANTEDRAFT_132918 Candida tenuis CANTEDRAFT_132918 I 0.852
CapteG221100 Capitella teleta CapteG221100 I 0.926
CFIO01_12657 Colletotrichum fioriniae CFIO01_12657 I 0.852
CGI_10019446 Crassostrea gigas CGI_10019446 I 0.926
CH063_12904 Colletotrichum higginsianum CH063_12904 I 0.852
CJA08385 Caenorhabditis japonica CJA08385 I 0.852
Cob_05053 Colletotrichum orbiculare Cob_05053 I 0.852
CPIJ008335 Culex quinquefasciatus CPIJ008335 I 0.758
CSUB01_05290 Colletotrichum sublineola CSUB01_05290 I 0.852
DACRYDRAFT_57073 Dacryopinax sp DACRYDRAFT_57073 I 0.889
DAPPUDRAFT_8703 Daphnia pulex DAPPUDRAFT_8703 I 0.926
srfB Dictyostelium discoideum DDB_G0282835 I 0.926
DI09_81p70 Microsporidia sp DI09_81p70 I 0.889
E5Q_02524 Mixia osmundae E5Q_02524 I 0.889
EFV60876 Trichinella spiralis EFV60876 I 0.926
ENSCSAVG00000008682 Ciona savignyi ENSCSAVG00000008682 I 0.852
SRF Erinaceus europaeus ENSEEUG00000005614 I 0.923
ENSFALG00000000878 Ficedula albicollis ENSFALG00000000878 I 1.000
SRF Gorilla gorilla ENSGGOG00000006293 I 1.000
ENSGMOG00000001540 Gadus morhua ENSGMOG00000001540 I 1.000
SRF Loxodonta africana ENSLAFG00000010278 I 1.000
ENSMLUG00000008828 Myotis lucifugus ENSMLUG00000008828 I 1.000
ENSOARG00000005757 Ovis aries ENSOARG00000005757 I 1.000
ENSOPRG00000002509 Ochotona princeps ENSOPRG00000002509 I 1.000
ENSPFOG00000018770 Poecilia formosa ENSPFOG00000018770 I 1.000
SRF Sorex araneus ENSSARG00000003401 I 0.923
SRF Taeniopygia guttata ENSTGUG00000004738 I 1.000
SRF Vicugna pacos ENSVPAG00000008912 I 1.000
GA17433 Drosophila pseudoobscura FBgn0077446 I 0.926
GF11392 Drosophila ananassae FBgn0088432 I 0.926
GG22961 Drosophila erecta FBgn0115118 I 0.926
GH20989 Drosophila grimshawi FBgn0128451 I 0.926
GI21322 Drosophila mojavensis FBgn0144052 I 0.926
GL20046 Drosophila persimilis FBgn0157643 I 0.926
GM11854 Drosophila sechellia FBgn0166795 I 0.926
GD11852 Drosophila simulans FBgn0183591 I 0.926
GJ21595 Drosophila virilis FBgn0208714 I 0.926
GK22205 Drosophila willistoni FBgn0224190 I 0.926
GE14398 Drosophila yakuba FBgn0232006 I 0.926
GB47234 Apis mellifera GB47234 I 0.926
GGTG_11623 Gaeumannomyces graminis GGTG_11623 I 0.852
GLOINDRAFT_82941 Rhizophagus irregularis GLOINDRAFT_82941 I 0.889
GLOTRDRAFT_42980 Gloeophyllum trabeum GLOTRDRAFT_42980 I 0.889
GLRG_02553 Colletotrichum graminicola GLRG_02553 I 0.852
H311_03229 Anncaliia algerae H311_03229 I 0.778
H311_03668 Anncaliia algerae H311_03668 I 0.778
HelroG137972 Helobdella robusta HelroG137972 I 0.815
HMEL017830 Heliconius melpomene HMEL017830 I 0.926
ISCW019966 Ixodes scapularis ISCW019966 I 0.926
J056_002827 Wallemia ichthyophaga J056_002827 I 0.815
L798_08800 Zootermopsis nevadensis L798_08800 I 0.926
LotgiG59850 Lottia gigantea LotgiG59850 I 0.926
M408DRAFT_79374 Serendipita vermifera M408DRAFT_79374 I 0.889
MAPG_02274 Magnaporthe poae MAPG_02274 I 0.852
MBM_07319 Marssonina brunnea MBM_07319 I 0.852
MCINX015635 Melitaea cinxia MCINX015635 I 0.893
MELLADRAFT_106990 Melampsora laricipopulina MELLADRAFT_106990 I 0.741
MESCA001358 Megaselia scalaris MESCA001358 I 0.926
MGG_02773 Magnaporthe oryzae MGG_02773 I 0.852
MVLG_04297 Microbotryum violaceum MVLG_04297 I 0.852
NCAS_0H03140 Naumovozyma castellii NCAS_0H03140 I 0.778
NCER_102270 Nosema ceranae NCER_102270 I 0.778
NV18787 Nasonia vitripennis NV18787 I 0.926
O9G_005180 Rozella allomycis O9G_005180 I 0.963
OIDMADRAFT_123333 Oidiodendron maius OIDMADRAFT_123333 I 0.852
PAXRUDRAFT_829045 Paxillus rubicundulus PAXRUDRAFT_829045 I 0.889
PFICI_14124 Pestalotiopsis fici PFICI_14124 I 0.852
PIIN_00796 Piriformospora indica PIIN_00796 I 0.889
Ppa-unc-120 Pristionchus pacificus PPA14131 I 0.926
PSEUBRA_SCAF3g03688 Pseudozyma brasiliensis PSEUBRA_SCAF3g03688 I 0.778
RHTO_03422 Rhodosporidium toruloides RHTO_03422 I 0.704
RHTO_04199 Rhodosporidium toruloides RHTO_04199 I 0.815
SBOR_8145 Sclerotinia borealis SBOR_8145 I 0.852
SINV23954 Solenopsis invicta SINV23954 I 0.963
SLOPH_1335 Spraguea lophii SLOPH_1335 I 0.778
SMAR003014 Strigamia maritima SMAR003014 I 0.926
SNOG_07764 Phaeosphaeria nodorum SNOG_07764 I 0.793
SPU_027774 Strongylocentrotus purpuratus SPU_027774 I 0.926
sr10299 Sporisorium reilianum sr10299 I 0.815
SS1G_05588 Sclerotinia sclerotiorum SS1G_05588 I 0.852
TC004911 Tribolium castaneum TC004911 I 0.926
THOM_1181 Trachipleistophora hominis THOM_1181 I 0.741
TriadG59812 Trichoplax adhaerens TriadG59812 I 0.741
VCUG_02078 Vavraia culicis VCUG_02078 I 0.741
VDAG_01770 Verticillium dahliae VDAG_01770 I 0.852
WALSEDRAFT_9958 Wallemia sebi WALSEDRAFT_9958 I 0.815
ZBAI_03536 Zygosaccharomyces bailii ZBAI_03536 I 0.704
ZBAI_08534 Zygosaccharomyces bailii ZBAI_08534 I 0.704
Aan_R005414 Calypte anna Aan_R005414 I 1.000
Afo_R000461 Aptenodytes forsteri Afo_R000461 I 1.000
Brh_R011000 Buceros rhinoceros Brh_R011000 I 1.000
Cflo_11261--XP_001120126.1_APIME Camponotus floridanus Cflo_11261--XP_001120126.1_APIME I 0.926
Cmyd_10009988 Chelonia mydas Cmyd_10009988 I 0.963
ENSP00000265354 Macaca fascicularis ENSP00000265354 I 0.900
Gfo_R009695 Geospiza fortis Gfo_R009695 I 1.000
Hsal_11632--XP_001120126.1_APIME Harpegnathos saltator Hsal_11632--XP_001120126.1_APIME I 0.926
Myotis_brandtii_SRF_10026135 Myotis brandtii Myotis_brandtii_SRF_10026135 I 0.839
Ogr17973 Ophisaurus gracilis Ogr17973 I 0.871
e_gw1.1.687.1 Phycomyces blakesleeanus e_gw1.1.687.1 I 0.889
e_gw1.4.1161.1 Mucor circinelloides e_gw1.4.1161.1 I 0.889
e_gw1.6.1281.1 Mucor circinelloides e_gw1.6.1281.1 I 0.889
estExt_fgeneshMC_pm.C_40429 Mucor circinelloides estExt_fgeneshMC_pm.C_40429 I 0.889
fgenesh1_kg.C_scaffold_2000029 Cochliobolus heterostrophus C5 fgenesh1_kg.C_scaffold_2000029 I 0.793
fgenesh2_pg.scaffold_196000035 Branchiostoma floridae fgenesh2_pg.scaffold_196000035 I 0.926
fgenesh2_pg.scaffold_8000100 Branchiostoma floridae fgenesh2_pg.scaffold_8000100 I 0.926
fgeneshPB_pg.1__662 Phycomyces blakesleeanus fgeneshPB_pg.1__662 I 0.889
gw1.27.105.1 Phycomyces blakesleeanus gw1.27.105.1 I 0.889
gw1.3.516.1 Phycomyces blakesleeanus gw1.3.516.1 I 0.889
gw1.5.917.1 Mucor circinelloides gw1.5.917.1 I 0.889
gw1.8.565.1 Mucor circinelloides gw1.8.565.1 I 0.889
Sakowv30019106m.g Saccoglossus kowalevskii Sakowv30019106m.g I 0.926
CLEC013390 Cimex lectularius CLEC013390 I 0.893
HHAL001485-PA Halyomorpha halys HHAL001485-PA I 0.963
LCUP011663 Lucilia cuprina LCUP011663 I 0.862
PredSwiss_CON2346.1 Pneumocystis carinii PredSwiss_CON2346.1 I 0.852
Scas_Contig649.23 Saccharomyces castellii Scas_Contig649.23 I 0.778
Sjc_0026780 Schistosoma japonicum Sjc_0026780 I 0.741
SNAPOd2T00012736001 Oikopleura dioica SNAPOd2T00012736001 I 0.741
SAKL0B11704g Lachancea kluyveri SAKL0B11704g I 0.778
AALB009948 Anopheles albimanus AALB009948 I 0.926
AARA006325 Anopheles arabiensis AARA006325 I 0.926
AATE011966 Anopheles atroparvus AATE011966 I 0.862
ACHR000964 Anopheles christyi ACHR000964 I 0.926
ACOM041693 Anopheles coluzzii ACOM041693 I 0.926
ACUA004576 Anopheles culicifacies ACUA004576 I 0.926
ADIR000346 Anopheles dirus ADIR000346 I 0.926
AEPI007010 Anopheles epiroticus AEPI007010 I 0.926
AFAF013563 Anopheles farauti AFAF013563 I 0.926
AFUN006147 Anopheles funestus AFUN006147 I 0.926
AMIN001258 Anopheles minimus AMIN001258 I 0.926
AQUA001308 Anopheles quadriannulatus AQUA001308 I 0.926
ASIS007770 Anopheles sinensis ASIS007770 I 0.926
ASTEI07120 Anopheles stephensi ASTEI07120 I 0.926
BGLB003854 Biomphalaria glabrata BGLB003854 I 0.926
LLOJ005985 Lutzomyia longipalpis LLOJ005985 I 0.833
MDOA002443 Musca domestica MDOA002443 I 0.926
ANCDUO_04431 Ancylostoma duodenale ANCDUO_04431 I 0.889
BXY_0217000 Bursaphelenchus xylophilus BXY_0217000 I 0.852
D917_02561 Trichinella nativa D917_02561 I 0.926
D918_07967 Trichuris suis D918_07967 I 0.926
ECPE_0001369301 Echinostoma caproni ECPE_0001369301 I 0.741
Hba_21368 Heterorhabditis bacteriophora Hba_21368 I 0.857
HPLM_0000743501 Haemonchus placei HPLM_0000743501 I 0.889
L596_g5274 Steinernema carpocapsae L596_g5274 I 0.741
L889_g24087 Steinernema feltiae L889_g24087 I 0.741
L892_g14520 Steinernema scapterisci L892_g14520 I 0.741
L893_g14743 Steinernema glaseri L893_g14743 I 0.741
L898_g9834 Steinernema monticolum L898_g9834 I 0.741
RSKR_0001102000 Rhabditophanes kr3021 RSKR_0001102000 I 0.889
SBAD_0000850501 Soboliphyme baturini SBAD_0000850501 I 0.926
scaffold2825-EXSNAP2012.1 Pristionchus exspectatus scaffold2825-EXSNAP2012.1 I 0.741
scaffold690-EXSNAP2012.12 Pristionchus exspectatus scaffold690-EXSNAP2012.12 I 0.926
TELCIR_03792 Teladorsagia circumcincta TELCIR_03792 I 0.857
TELCIR_12851 Teladorsagia circumcincta TELCIR_12851 I 0.889
TMUE_s0092001100 Trichuris muris TMUE_s0092001100 I 0.926
TTRE_0000468501 Trichuris trichiura TTRE_0000468501 I 0.926
EHEL_071720 Encephalitozoon hellem EHEL_071720 N 0.741
EROM_071660 Encephalitozoon romaleae EROM_071660 N 0.741
ASIS013674 Anopheles sinensis ASIS013674 N 0.926