PMAA_018770 (Talaromyces marneffei)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00319 (SRF-TF) IPR002100 PMAA_018770 T255789_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
srfA
M02283_2.00 		Dictyostelium discoideum
MYDWWWNNRD
HYNNWWWHRK		 PBM
Weirauch et al.(2014)
pTH5539 		0.917 0.917
MCM1
M01558_2.00 		Saccharomyces cerevisiae
YNNWWNNRGN
NCYNNWWNNR		 PBM
Zhu et al.(2009)
Mcm1 		0.875 0.875
MCM1
M08589_2.00 		Saccharomyces cerevisiae
HNHTWCCBDWWHVGGAHDHN
NDHDTCCBDWWHVGGWADND		 Misc
DeBoer et al.(2011)
YMR043W_831 		0.875 0.875
MCM1
M10990_2.00 		Saccharomyces cerevisiae
WNDCCYAAWNNGGWMW
WKWCCNNWTTRGGHNW		 Transfac
Matys et al.(2006)
F$MCM1_01 		0.875 0.875
MCM1
M10991_2.00 		Saccharomyces cerevisiae Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
F$MCM1_02 		0.875 0.875
MCM1
M10992_2.00 		Saccharomyces cerevisiae Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
F$MCM1_Q6 		0.875 0.875
MCM1
M08458_2.00 		Saccharomyces cerevisiae
TTCCYRAWNNGG
CCNNWTYRGGAA		 COMPILED
Mathelier et al.(2014)
MA0331.1 		0.875 0.875
Srf
M00178_2.00 		Mus musculus
NNDDWWHHNN
NNDDWWHHNN		 PBM
Badis et al.(2009)
Srf_3509 		0.812 0.812
SRF
M03341_2.00 		Homo sapiens
DCCWTATATGGT
ACCATATAWGGH		 SELEX
Jolma et al.(2013)
SRF_1 		0.812 0.812
SRF
M03342_2.00 		Homo sapiens
TKHCCWTATATGGKMA
TKMCCATATAWGGDMA		 SELEX
Jolma et al.(2013)
SRF_2 		0.812 0.812
SRF
M05553_2.00 		Homo sapiens
CCNTANAWGG
CCWTNTANGG		 SELEX
Yin et al.(2017)
SRF_eDBD_HT-SELEX 		0.812 0.812
SRF
M07981_2.00 		Homo sapiens
NNNWDNCCAWAWAWGGNVD
HBNCCWTWTWTGGNHWNNN		 ChIP-seq
Gerstein et al.(2012)
GM12878_SRF_HudsonAlpha 		0.812 0.812
SRF
M07982_2.00 		Homo sapiens
CCAWATAAGGNMAD
HTKNCCTTATWTGG		 ChIP-seq
Gerstein et al.(2012)
H1-hESC_SRF_HudsonAlpha 		0.812 0.812
SRF
M07983_2.00 		Homo sapiens
NNWNNCCAWAWAWGGNVD
HBNCCWTWTWTGGNNWNN		 ChIP-seq
Gerstein et al.(2012)
HepG2_SRF_HudsonAlpha 		0.812 0.812
SRF
M07984_2.00 		Homo sapiens
GNCCAWATADGGHMANN
NNTKDCCHTATWTGGNC		 ChIP-seq
Gerstein et al.(2012)
K562_SRF_HudsonAlpha 		0.812 0.812
SRF
M09249_2.00 		Homo sapiens
HNWBVCCAWAWAWGGNRR
YYNCCWTWTWTGGBVWND		 Misc
Kulakovskiy et al.(2013)
SRF_HUMAN.H11MO.0.A 		0.812 0.812
Srf
M09254_2.00 		Mus musculus
NWDVCCAWAWAWGGVMR
YKBCCWTWTWTGGBHWN		 Misc
Kulakovskiy et al.(2013)
SRF_MOUSE.H11MO.0.A 		0.812 0.812
Srf
M09598_2.00 		Mus musculus
CCWWATWWGGNH
DNCCWWATWWGG		 Misc
Heinz et al.(2010)
PUER-Srf_Sullivan_et_al. 		0.812 0.812
SRF
M10947_2.00 		Homo sapiens
MNBWCCWTATAWGGGCAT
ATGCCCWTATAWGGWVNK		 Transfac
Matys et al.(2006)
V$SRF_01 		0.812 0.812
SRF
M10948_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SRF_02 		0.812 0.812
SRF
M10949_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SRF_03 		0.812 0.812
SRF
M10950_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SRF_09 		0.812 0.812
SRF
M10951_2.00 		Homo sapiens
DCCWTATAWGGVSHB
VDSBCCWTATAWGGH		 Transfac
Matys et al.(2006)
V$SRF_C 		0.812 0.812
SRF
M10952_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SRF_Q3 		0.812 0.812
SRF
M10953_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SRF_Q4 		0.812 0.812
SRF
M10954_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SRF_Q5_01 		0.812 0.812
SRF
M10955_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SRF_Q5_02 		0.812 0.812
SRF
M10956_2.00 		Homo sapiens
BNCCAWATAWGGVN
NBCCWTATWTGGNV		 Transfac
Matys et al.(2006)
V$SRF_Q6 		0.812 0.812
SRF
M05554_2.00 		Homo sapiens
CCNTAYAWGG
CCWTRTANGG		 SELEX
Yin et al.(2017)
SRF_eDBD_Methyl-HT-SELEX 		0.812 0.812
bs
M03915_2.00 		Drosophila melanogaster
NCCWTATAWGGN
NCCWTATAWGGN		 SELEX
Nitta et al.(2015)
bs_1 		0.771 0.771
bs
M03916_2.00 		Drosophila melanogaster
NCCWTAHAWGGH
DCCWTDTAWGGN		 SELEX
Nitta et al.(2015)
bs_2 		0.771 0.771
unc-120
M00684_2.00 		Caenorhabditis elegans
CHWAWWDGG
CCHWWTWDG		 PBM
Narasimhan et al.(2015)
pTH10822 		0.729 0.729
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
EEA26969 MADS box 62 109

Links

Other MADS box family TFs
Other Talaromyces marneffei TFs

451 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
BGIOSGA000005 Oryza indica BGIOSGA000005 I
Bo00847s050 Brassica oleracea Bo00847s050 I
Bra020650 Brassica rapa Bra020650 I
BRADI2G62660 Brachypodium distachyon BRADI2G62660 I
GLYMA07G37190 Glycine max GLYMA07G37190 I
GLYMA17G03410 Glycine max GLYMA17G03410 I
LPERR04G11580 Leersia perrieri LPERR04G11580 I
MLOC_54886 Hordeum vulgare MLOC_54886 I
MTR_4g121110 Medicago truncatula MTR_4g121110 I
OB01G55040 Oryza brachyantha OB01G55040 I
OBART01G45830 Oryza barthii OBART01G45830 I
OGLUM01G50190 Oryza glumaepatula OGLUM01G50190 I
OLONG_011157 Oryza longistaminata OLONG_011157 I
ONIVA01G52080 Oryza nivara ONIVA01G52080 I
ORGLA01G0395900 Oryza glaberrima ORGLA01G0395900 I
ORUFI01G49320 Oryza rufipogon ORUFI01G49320 I
OS01G0976800 Oryza sativa OS01G0976800 I
PGSC0003DMG400002337 Solanum tuberosum PGSC0003DMG400002337 I
PGSC0003DMG400004624 Solanum tuberosum PGSC0003DMG400004624 I
POPTR_0005s02040 Populus trichocarpa POPTR_0005s02040 I
POPTR_0008s22950 Populus trichocarpa POPTR_0008s22950 I
POPTR_0010s00360 Populus trichocarpa POPTR_0010s00360 I
PRUPE_ppa013171mg Prunus persica PRUPE_ppa013171mg I
PRUPE_ppa015310mg Prunus persica PRUPE_ppa015310mg I
Sb03g047520 Sorghum bicolor Sb03g047520 I
GATA16 Arabidopsis lyrata scaffold_801309.1 I
Si002983m.g Setaria italica Si002983m.g I
Solyc12g099370.1 Solanum lycopersicum Solyc12g099370.1 I
TCM_004753 Theobroma cacao TCM_004753 I
TCM_021303 Theobroma cacao TCM_021303 I
TCM_026732 Theobroma cacao TCM_026732 I
Traes_3AL_6DE434492 Triticum aestivum Traes_3AL_6DE434492 I
TRAES3BF026000060CFD_g Triticum aestivum TRAES3BF026000060CFD_g I
TRIUR3_03165 Triticum urartu TRIUR3_03165 I
VIT_05s0077g01450 Vitis vinifera VIT_05s0077g01450 I
VIT_14s0060g01520 Vitis vinifera VIT_14s0060g01520 I
Ca_02992 Cicer arietinum Ca_02992 I
Cla009422 Citrullus lanatus Cla009422 I
Cla022104 Citrullus lanatus Cla022104 I
Pm003128 Prunus mume Pm003128 I
Pm008287 Prunus mume Pm008287 I
29889.m003248 Ricinus communis 29889.m003248 I
cassava15577.m1 Manihot esculenta cassava15577.m1 I
cassava15588.m1 Manihot esculenta cassava15588.m1 I
cassava37139.valid.m1 Manihot esculenta cassava37139.valid.m1 I
cassava43030.valid.m1 Manihot esculenta cassava43030.valid.m1 I
Cucsa.069460 Cucumis sativus Cucsa.069460 I
Cucsa.252730 Cucumis sativus Cucsa.252730 I
mgf003937m Mimulus guttatus mgf003937m I
Bostr.15774s0060 Boechera stricta Bostr.15774s0060 I
Carubv10027332m.g Capsella rubella Carubv10027332m.g I
Ciclev10003698m.g Citrus clementina Ciclev10003698m.g I
Ciclev10006161m.g Citrus clementina Ciclev10006161m.g I
Ciclev10022856m.g Citrus clementina Ciclev10022856m.g I
Eucgr.A00193 Eucalyptus grandis Eucgr.A00193 I
Eucgr.H04023 Eucalyptus grandis Eucgr.H04023 I
evm.TU.supercontig_151.51 Carica papaya evm.TU.supercontig_151.51 I
evm.TU.supercontig_48.133 Carica papaya evm.TU.supercontig_48.133 I
evm.TU.supercontig_9.102 Carica papaya evm.TU.supercontig_9.102 I
gene05175-v1.0-hybrid Fragaria vesca gene05175-v1.0-hybrid I
Gorai.005G065300 Gossypium raimondii Gorai.005G065300 I
Gorai.007G125000 Gossypium raimondii Gorai.007G125000 I
Gorai.008G142200 Gossypium raimondii Gorai.008G142200 I
Gorai.013G127900 Gossypium raimondii Gorai.013G127900 I
Lus10016849.g Linum usitatissimum Lus10016849.g I
Lus10037721.g Linum usitatissimum Lus10037721.g I
MDP0000309902 Malus domestica MDP0000309902 I
orange1.1g030971m.g Citrus sinensis orange1.1g030971m.g I
orange1.1g032112m.g Citrus sinensis orange1.1g032112m.g I
orange1.1g033001m.g Citrus sinensis orange1.1g033001m.g I
Pavir.Eb04066 Panicum virgatum Pavir.Eb04066 I
SapurV1A.0107s0060 Salix purpurea SapurV1A.0107s0060 I
SapurV1A.0186s0560 Salix purpurea SapurV1A.0186s0560 I
SapurV1A.0739s0060 Salix purpurea SapurV1A.0739s0060 I
SapurV1A.2413s0010 Salix purpurea SapurV1A.2413s0010 I
Thhalv10005103m.g Eutrema salsugineum Thhalv10005103m.g I
PK18820.1 Cannabis sativa PK18820.1 I
PK21934.1 Cannabis sativa PK21934.1 I
LjSGA_011217.1 Lotus japonicus LjSGA_011217.1 I
AMTR_s00064p00107710 Amborella trichopoda AMTR_s00064p00107710 N
AMTR_s00147p00053080 Amborella trichopoda AMTR_s00147p00053080 N
GATA22 Arabidopsis thaliana AT4G26150 N
GATA21 Arabidopsis thaliana AT5G56860 N
BGIOSGA006859 Oryza indica BGIOSGA006859 N
BGIOSGA023117 Oryza indica BGIOSGA023117 N
BGIOSGA023119 Oryza indica BGIOSGA023119 N
Bo1g042950 Brassica oleracea Bo1g042950 N
Bo2g033970 Brassica oleracea Bo2g033970 N
Bo7g110740 Brassica oleracea Bo7g110740 N
Bo9g127360 Brassica oleracea Bo9g127360 N
Bra002788 Brassica rapa Bra002788 N
Bra019118 Brassica rapa Bra019118 N
Bra026461 Brassica rapa Bra026461 N
Bra035633 Brassica rapa Bra035633 N
BRADI1G37480 Brachypodium distachyon BRADI1G37480 N
BRADI3G08240 Brachypodium distachyon BRADI3G08240 N
CME102C Cyanidioschyzon merolae CME102C N
CGA1 Arabidopsis lyrata fgenesh2_kg.7__1630__AT4G26150.1 N
GNC Arabidopsis lyrata fgenesh2_kg.8__1592__AT5G56860.1 N
GLYMA04G05431 Glycine max GLYMA04G05431 N
GLYMA13G00200 Glycine max GLYMA13G00200 N
GLYMA15G18380 Glycine max GLYMA15G18380 N
GLYMA17G06290 Glycine max GLYMA17G06290 N
GLYMA17G34670 Glycine max GLYMA17G34670 N
GRMZM2G031983 Zea mays GRMZM2G031983 N
GRMZM2G039586 Zea mays GRMZM2G039586 N
GSMUA_Achr10G27510_001 Musa acuminata GSMUA_Achr10G27510_001 N
GSMUA_Achr4G30820_001 Musa acuminata GSMUA_Achr4G30820_001 N
GSMUA_Achr8G24880_001 Musa acuminata GSMUA_Achr8G24880_001 N
LPERR02G07780 Leersia perrieri LPERR02G07780 N
LPERR06G15680 Leersia perrieri LPERR06G15680 N
MLOC_10364 Hordeum vulgare MLOC_10364 N
MLOC_70809 Hordeum vulgare MLOC_70809 N
MTR_1g016170 Medicago truncatula MTR_1g016170 N
MTR_2g038720 Medicago truncatula MTR_2g038720 N
MTR_4g126350 Medicago truncatula MTR_4g126350 N
OB02G18010 Oryza brachyantha OB02G18010 N
OB06G26630 Oryza brachyantha OB06G26630 N
OBART02G08990 Oryza barthii OBART02G08990 N
OBART06G19060 Oryza barthii OBART06G19060 N
OGLUM02G09200 Oryza glumaepatula OGLUM02G09200 N
OGLUM06G20240 Oryza glumaepatula OGLUM06G20240 N
OMERI02G10250 Oryza meridionalis OMERI02G10250 N
ONIVA06G22870 Oryza nivara ONIVA06G22870 N
ONIVA11G03260 Oryza nivara ONIVA11G03260 N
OPUNC02G08040 Oryza punctata OPUNC02G08040 N
OPUNC06G17260 Oryza punctata OPUNC06G17260 N
ORGLA06G0158200 Oryza glaberrima ORGLA06G0158200 N
ORUFI02G09020 Oryza rufipogon ORUFI02G09020 N
ORUFI06G20160 Oryza rufipogon ORUFI06G20160 N
OS02G0220400 Oryza sativa OS02G0220400 N
OS06G0571800 Oryza sativa OS06G0571800 N
PGSC0003DMG400000280 Solanum tuberosum PGSC0003DMG400000280 N
PGSC0003DMG400004493 Solanum tuberosum PGSC0003DMG400004493 N
POPTR_0006s24560 Populus trichocarpa POPTR_0006s24560 N
POPTR_0018s05160 Populus trichocarpa POPTR_0018s05160 N
PRUPE_ppa018120mg Prunus persica PRUPE_ppa018120mg N
PRUPE_ppa024374mg Prunus persica PRUPE_ppa024374mg N
Sb04g007750 Sorghum bicolor Sb04g007750 N
Sb10g022580 Sorghum bicolor Sb10g022580 N
Si006733m.g Setaria italica Si006733m.g N
Si019058m.g Setaria italica Si019058m.g N
Solyc07g038160.2 Solanum lycopersicum Solyc07g038160.2 N
Solyc12g008830.1 Solanum lycopersicum Solyc12g008830.1 N
TCM_037285 Theobroma cacao TCM_037285 N
TCM_037666 Theobroma cacao TCM_037666 N
Traes_6AS_1BF0823061 Triticum aestivum Traes_6AS_1BF0823061 N
Traes_6AS_1BF082306 Triticum aestivum Traes_6AS_1BF082306 N
Traes_6BS_4EA352A7A Triticum aestivum Traes_6BS_4EA352A7A N
Traes_6DS_77038429A Triticum aestivum Traes_6DS_77038429A N
Traes_7BL_86BB5C61E Triticum aestivum Traes_7BL_86BB5C61E N
Traes_7DL_BFADB408C Triticum aestivum Traes_7DL_BFADB408C N
VIT_04s0008g01290 Vitis vinifera VIT_04s0008g01290 N
VIT_11s0016g02210 Vitis vinifera VIT_11s0016g02210 N
Cla005266 Citrullus lanatus Cla005266 N
Cla021191 Citrullus lanatus Cla021191 N
Pm005502 Prunus mume Pm005502 N
Pm027164 Prunus mume Pm027164 N
29794.m003323 Ricinus communis 29794.m003323 N
29912.m005322 Ricinus communis 29912.m005322 N
30128.m008883 Ricinus communis 30128.m008883 N
cassava32152.m1 Manihot esculenta cassava32152.m1 N
cassava33236.m1 Manihot esculenta cassava33236.m1 N
cassava43851.valid.m1 Manihot esculenta cassava43851.valid.m1 N
Cucsa.353330 Cucumis sativus Cucsa.353330 N
Cucsa.397360 Cucumis sativus Cucsa.397360 N
mgf008387m Mimulus guttatus mgf008387m N
mgf011737m Mimulus guttatus mgf011737m N
mgf025842m Mimulus guttatus mgf025842m N
Aquca_003_00608 Aquilegia coerulea Aquca_003_00608 N
Aquca_020_00467 Aquilegia coerulea Aquca_020_00467 N
Bostr.26833s0575 Boechera stricta Bostr.26833s0575 N
Bostr.7867s0434 Boechera stricta Bostr.7867s0434 N
Cagra.3467s0056 Capsella grandiflora Cagra.3467s0056 N
Cagra.4138s0005 Capsella grandiflora Cagra.4138s0005 N
Carubv10005113m.g Capsella rubella Carubv10005113m.g N
Carubv10026556m.g Capsella rubella Carubv10026556m.g N
Ciclev10008943m.g Citrus clementina Ciclev10008943m.g N
Ciclev10008968m.g Citrus clementina Ciclev10008968m.g N
Ciclev10009004m.g Citrus clementina Ciclev10009004m.g N
Eucgr.C03048 Eucalyptus grandis Eucgr.C03048 N
Eucgr.C03895 Eucalyptus grandis Eucgr.C03895 N
evm.TU.supercontig_93.28 Carica papaya evm.TU.supercontig_93.28 N
gene02686-v1.0-hybrid Fragaria vesca gene02686-v1.0-hybrid N
gene12624-v1.0-hybrid Fragaria vesca gene12624-v1.0-hybrid N
Gorai.009G031400 Gossypium raimondii Gorai.009G031400 N
Gorai.009G045000 Gossypium raimondii Gorai.009G045000 N
Gorai.010G082800 Gossypium raimondii Gorai.010G082800 N
Gorai.010G101100 Gossypium raimondii Gorai.010G101100 N
Gorai.013G206400 Gossypium raimondii Gorai.013G206400 N
Lus10020684.g Linum usitatissimum Lus10020684.g N
MDP0000131803 Malus domestica MDP0000131803 N
MDP0000190038 Malus domestica MDP0000190038 N
MDP0000237740 Malus domestica MDP0000237740 N
MDP0000739900 Malus domestica MDP0000739900 N
orange1.1g020987m.g Citrus sinensis orange1.1g020987m.g N
orange1.1g021329m.g Citrus sinensis orange1.1g021329m.g N
orange1.1g021859m.g Citrus sinensis orange1.1g021859m.g N
Pavir.Aa02907 Panicum virgatum Pavir.Aa02907 N
Pavir.Ab00790 Panicum virgatum Pavir.Ab00790 N
Pavir.Da00760 Panicum virgatum Pavir.Da00760 N
Pavir.Db01250 Panicum virgatum Pavir.Db01250 N
SapurV1A.0086s0290 Salix purpurea SapurV1A.0086s0290 N
Thhalv10013793m.g Eutrema salsugineum Thhalv10013793m.g N
Thhalv10025461m.g Eutrema salsugineum Thhalv10025461m.g N
PK07593.1 Cannabis sativa PK07593.1 N
chr4.CM0244.740.nd Lotus japonicus chr4.CM0244.740.nd N
chr5.CM0019.380.nc Lotus japonicus chr5.CM0019.380.nc N