Carubv10027979m.g (Capsella rubella)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00319 (SRF-TF) IPR002100 Carubv10027979m.g T257841_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
Carubv10027979m MADS box 10 56

Links

Other MADS box family TFs
Other Capsella rubella TFs

15 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
MYB60 Arabidopsis thaliana AT1G08810 D
MYB3 Arabidopsis thaliana AT1G22640 D
Gorai.012G186500 Gossypium raimondii Gorai.012G186500 I
GRMZM2G001223 Zea mays GRMZM2G001223 I
Gorai.001G024300 Gossypium raimondii Gorai.001G024300 I
MLOC_39554 Hordeum vulgare MLOC_39554 I
Gorai.001G239000 Gossypium raimondii Gorai.001G239000 I
Gorai.008G086400 Gossypium raimondii Gorai.008G086400 I
SapurV1A.3377s0010 Salix purpurea SapurV1A.3377s0010 I
SapurV1A.0890s0050 Salix purpurea SapurV1A.0890s0050 I
SapurV1A.0876s0040 Salix purpurea SapurV1A.0876s0040 I
GRMZM2G051528 Zea mays GRMZM2G051528 I
PGSC0003DMG400014550 Solanum tuberosum PGSC0003DMG400014550 I
POPTR_0013s05310 Populus trichocarpa POPTR_0013s05310 I
Pavir.Eb03517 Panicum virgatum Pavir.Eb03517 I
TCM_041010 Theobroma cacao TCM_041010 I
orange1.1g019307m.g Citrus sinensis orange1.1g019307m.g I
GLYMA14G10483 Glycine max GLYMA14G10483 I
GLYMA09G04370 Glycine max GLYMA09G04370 I
GLYMA0041S00310 Glycine max GLYMA0041S00310 I
Bostr.13129s0196 Boechera stricta Bostr.13129s0196 I
Cucsa.051050 Cucumis sativus Cucsa.051050 I
ATMYB16 Arabidopsis thaliana AT5G15310 I
mgf023771m Mimulus guttatus mgf023771m N
evm.TU.supercontig_34.3 Carica papaya evm.TU.supercontig_34.3 N
MDP0000879675 Malus domestica MDP0000879675 N
MDP0000825447 Malus domestica MDP0000825447 N
Cagra.0876s0043 Capsella grandiflora Cagra.0876s0043 N
MDP0000793261 Malus domestica MDP0000793261 N
Cagra.5789s0001 Capsella grandiflora Cagra.5789s0001 N
MDP0000158409 Malus domestica MDP0000158409 N
Ciclev10023519m.g Citrus clementina Ciclev10023519m.g N
Eucgr.B03766 Eucalyptus grandis Eucgr.B03766 N
evm.TU.supercontig_1.55 Carica papaya evm.TU.supercontig_1.55 N
evm.TU.supercontig_18.15 Carica papaya evm.TU.supercontig_18.15 N
Pavir.J14839 Panicum virgatum Pavir.J14839 N
chr1.CM0600.120.nd Lotus japonicus chr1.CM0600.120.nd N
PDK_20s1922781g001 Phoenix dactylifera PDK_20s1922781g001 N
PDK_20s1546421g001 Phoenix dactylifera PDK_20s1546421g001 N
LjSGA_064890.1.1 Lotus japonicus LjSGA_064890.1.1 N
LjSGA_057664.1 Lotus japonicus LjSGA_057664.1 N
LjSGA_057038.1 Lotus japonicus LjSGA_057038.1 N
LjSGA_034303.1 Lotus japonicus LjSGA_034303.1 N
LjSGA_014958.1 Lotus japonicus LjSGA_014958.1 N
CM0385.220.nd Lotus japonicus CM0385.220.nd N
chr5.CM0071.390.nd Lotus japonicus chr5.CM0071.390.nd N
MDP0000911051 Malus domestica MDP0000911051 N
PK22972.1 Cannabis sativa PK22972.1 N
PK21717.1 Cannabis sativa PK21717.1 N
PK00358.1 Cannabis sativa PK00358.1 N
Pavir.J25377 Panicum virgatum Pavir.J25377 N
cassava2662.m1 Manihot esculenta cassava2662.m1 N
Pavir.Ia03786 Panicum virgatum Pavir.Ia03786 N
Pavir.Eb02286 Panicum virgatum Pavir.Eb02286 N
Pavir.Db00878 Panicum virgatum Pavir.Db00878 N
GLYMA16G16170 Glycine max GLYMA16G16170 N
POPTR_0017s10780 Populus trichocarpa POPTR_0017s10780 N
PGSC0003DMG401010883 Solanum tuberosum PGSC0003DMG401010883 N
OS05G0350900 Oryza sativa OS05G0350900 N
OS04G0517100 Oryza sativa OS04G0517100 N
ORGLA02G0219000 Oryza glaberrima ORGLA02G0219000 N
OLONG_025203 Oryza longistaminata OLONG_025203 N
OB06G28240 Oryza brachyantha OB06G28240 N
MLOC_71332 Hordeum vulgare MLOC_71332 N
MLOC_59184 Hordeum vulgare MLOC_59184 N
MLOC_12474 Hordeum vulgare MLOC_12474 N
Solyc03g098270.1 Solanum lycopersicum Solyc03g098270.1 N
F775_42755 Aegilops tauschii F775_42755 N
F775_20859 Aegilops tauschii F775_20859 N
Bra024685 Brassica rapa Bra024685 N
Bo8g104180 Brassica oleracea Bo8g104180 N
Bo4g198650 Brassica oleracea Bo4g198650 N
BGIOSGA010548 Oryza indica BGIOSGA010548 N
MYB95 Arabidopsis thaliana AT1G74430 N
AMTR_s00087p00039380 Amborella trichopoda AMTR_s00087p00039380 N
AMTR_s00057p00069720 Amborella trichopoda AMTR_s00057p00069720 N
Ca_10215 Cicer arietinum Ca_10215 N
mgf018056m Mimulus guttatus mgf018056m N
mgf017705m Mimulus guttatus mgf017705m N
mg021480m Mimulus guttatus mg021480m N
e_gw1.1.4.1 Physcomitrella patens e_gw1.1.4.1 N
cassava45648.m1 Manihot esculenta cassava45648.m1 N
AMTR_s00009p00257950 Amborella trichopoda AMTR_s00009p00257950 N
cassava15703.m1 Manihot esculenta cassava15703.m1 N
30128.m008990 Ricinus communis 30128.m008990 N
Pm015551 Prunus mume Pm015551 N
Pm000007 Prunus mume Pm000007 N
mgf020736m Mimulus guttatus mgf020736m N
TRIUR3_33467 Triticum urartu TRIUR3_33467 N
Traes_7DS_76515C538 Triticum aestivum Traes_7DS_76515C538 N
Traes_7AS_FD974A17F Triticum aestivum Traes_7AS_FD974A17F N
Traes_7AS_ADDEF000C Triticum aestivum Traes_7AS_ADDEF000C N
Traes_6AL_C0A2B4F041 Triticum aestivum Traes_6AL_C0A2B4F041 N
Traes_5AS_D238844BB Triticum aestivum Traes_5AS_D238844BB N
Traes_3DL_D9A29948B Triticum aestivum Traes_3DL_D9A29948B N
Traes_3AL_F09C7CA19 Triticum aestivum Traes_3AL_F09C7CA19 N
Traes_1BL_A44464337 Triticum aestivum Traes_1BL_A44464337 N