orange1.1g042044m.g (Citrus sinensis)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00319 (SRF-TF) IPR002100 orange1.1g042044m.g T258829_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
MADS2_PETHY
M10998_2.00 		Petunia x hybrida Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS2_01 		0.875 0.875
Q9AVU7_MALDO
M11027_2.00 		Malus domestica Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$PI_01 		0.833 0.833
FBP1_PETHY
M10996_2.00 		Petunia x hybrida Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$FBP1_01 		0.812 0.812
PI
M08148_2.00 		Arabidopsis thaliana
MCMAAARWRGAAAR
YTTTCYWYTTTKGK		 ChIP-seq
Mathelier et al.(2014)
MA0559.1 		0.792 0.792
AP3
M08146_2.00 		Arabidopsis thaliana
WDCCMAAARWRGHAA
TTDCYWYTTTKGGHW		 ChIP-seq
Mathelier et al.(2014)
MA0556.1 		0.708 0.708
MAD14_ORYSJ
M10960_2.00 		Oryza sativa Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS14_01 		0.708 0.708
Q9ZRA5_MALDO
M11030_2.00 		Malus domestica Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS2_04 		0.708 0.708
AP3
M10919_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADSB_Q2 		0.708 0.708
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
orange1.1g042044m MADS box 10 57

Links

Other MADS box family TFs
Other Citrus sinensis TFs

124 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
BBX Homo sapiens ENSG00000114439 D 0.000
Cic Mus musculus ENSMUSG00000005442 D 0.000
Bbx Mus musculus ENSMUSG00000022641 D 0.000
bbx Drosophila melanogaster FBgn0024251 D 0.000
cic Drosophila melanogaster FBgn0262582 D 0.000
gei-3 Caenorhabditis elegans WBGene00001560 D 0.000
CpipJ_CPIJ005582 Culex pipiens CpipJ_CPIJ005582 I 0.000
CpipJ_CPIJ012202 Culex pipiens CpipJ_CPIJ012202 I 0.000
WUBG_04884 Wuchereria bancrofti WUBG_04884 I 0.000
AAEL004381 Aedes aegypti AAEL004381 I 0.000
AAEL011161 Aedes aegypti AAEL011161 I 0.000
ACEP13490 Atta cephalotes ACEP13490 I 0.000
ACEP18843 Atta cephalotes ACEP18843 I 0.000
ACYPI004663 Acyrthosiphon pisum ACYPI004663 I 0.000
ADAC008993 Anopheles darlingi ADAC008993 I 0.000
AGAP013411 Anopheles gambiae AGAP013411 I 0.000
BGIBMGA008274 Bombyx mori BGIBMGA008274 I 0.000
BGIBMGA010263 Bombyx mori BGIBMGA010263 I 0.000
Bm5934 Brugia malayi Bm5934 I 0.000
CapteG223458 Capitella teleta CapteG223458 I 0.000
CapteG39110 Capitella teleta CapteG39110 I 0.000
CapteG39126 Capitella teleta CapteG39126 I 0.000
CBG00068 Caenorhabditis briggsae CBG00068 I 0.000
CBN17413 Caenorhabditis brenneri CBN17413 I 0.000
CGI_10003963 Crassostrea gigas CGI_10003963 I 0.000
CGI_10015746 Crassostrea gigas CGI_10015746 I 0.000
CGI_10018417 Crassostrea gigas CGI_10018417 I 0.000
CJA07419 Caenorhabditis japonica CJA07419 I 0.000
CPIJ005582 Culex quinquefasciatus CPIJ005582 I 0.000
CPIJ012202 Culex quinquefasciatus CPIJ012202 I 0.000
CRE24068 Caenorhabditis remanei CRE24068 I 0.000
CY34DRAFT_798812 Suillus luteus CY34DRAFT_798812 I 0.000
BBX Anolis carolinensis ENSACAG00000006532 I 0.000
ENSAMEG00000002574 Ailuropoda melanoleuca ENSAMEG00000002574 I 0.000
ENSAMXG00000014362 Astyanax mexicanus ENSAMXG00000014362 I 0.000
ENSAMXG00000017656 Astyanax mexicanus ENSAMXG00000017656 I 0.000
ENSAMXG00000018358 Astyanax mexicanus ENSAMXG00000018358 I 0.000
ENSAPLG00000005336 Anas platyrhynchos ENSAPLG00000005336 I 0.000
BBX Bos taurus ENSBTAG00000006893 I 0.000
ENSBTAG00000019785 Bos taurus ENSBTAG00000019785 I 0.000
CIC Canis familiaris ENSCAFG00000004858 I 0.000
BBX Canis familiaris ENSCAFG00000009867 I 0.000
ENSCING00000007655 Ciona intestinalis ENSCING00000007655 I 0.000
BBX Callithrix jacchus ENSCJAG00000004843 I 0.000
CIC Callithrix jacchus ENSCJAG00000012847 I 0.000
BBX Cavia porcellus ENSCPOG00000003575 I 0.000
ENSCPOG00000004391 Cavia porcellus ENSCPOG00000004391 I 0.000
ENSCSAG00000006313 Chlorocebus sabaeus ENSCSAG00000006313 I 0.000
bbx Danio rerio ENSDARG00000012699 I 0.000
cica Danio rerio ENSDARG00000071150 I 0.000
BBX Dasypus novemcinctus ENSDNOG00000013923 I 0.000
CIC Dasypus novemcinctus ENSDNOG00000047657 I 0.000
Bbx Dipodomys ordii ENSDORG00000008169 I 0.000
Cic Dipodomys ordii ENSDORG00000008822 I 0.000
CIC Equus caballus ENSECAG00000011342 I 0.000
BBX Equus caballus ENSECAG00000023413 I 0.000
BBX Erinaceus europaeus ENSEEUG00000014092 I 0.000
BBX Echinops telfairi ENSETEG00000005122 I 0.000
CIC Echinops telfairi ENSETEG00000017271 I 0.000
ENSFALG00000006478 Ficedula albicollis ENSFALG00000006478 I 0.000
BBX Felis catus ENSFCAG00000007296 I 0.000
ENSFCAG00000012737 Felis catus ENSFCAG00000012737 I 0.000
CIC Homo sapiens ENSG00000079432 I 0.000
cicb Gasterosteus aculeatus ENSGACG00000009452 I 0.000
bbx Gasterosteus aculeatus ENSGACG00000020111 I 0.000
CIC Gorilla gorilla ENSGGOG00000000192 I 0.000
BBX Gorilla gorilla ENSGGOG00000028441 I 0.000
ENSGMOG00000005167 Gadus morhua ENSGMOG00000005167 I 0.000
ENSGMOG00000015829 Gadus morhua ENSGMOG00000015829 I 0.000
ENSLACG00000001134 Latimeria chalumnae ENSLACG00000001134 I 0.000
ENSLACG00000002764 Latimeria chalumnae ENSLACG00000002764 I 0.000
BBX Loxodonta africana ENSLAFG00000006362 I 0.000
ENSLOCG00000005165 Lepisosteus oculatus ENSLOCG00000005165 I 0.000
ENSMEUG00000016625 Macropus eugenii ENSMEUG00000016625 I 0.000
BBX Meleagris gallopavo ENSMGAG00000014384 I 0.000
ENSMICG00000015176 Microcebus murinus ENSMICG00000015176 I 0.000
BBX Myotis lucifugus ENSMLUG00000007351 I 0.000
ENSMLUG00000016650 Myotis lucifugus ENSMLUG00000016650 I 0.000
BBX Macaca mulatta ENSMMUG00000008787 I 0.000
ENSMMUG00000012174 Macaca mulatta ENSMMUG00000012174 I 0.000
BBX Monodelphis domestica ENSMODG00000001748 I 0.000
ENSMPUG00000007557 Mustela putorius furo ENSMPUG00000007557 I 0.000
ENSMPUG00000009907 Mustela putorius furo ENSMPUG00000009907 I 0.000
ENSNLEG00000003524 Nomascus leucogenys ENSNLEG00000003524 I 0.000
ENSNLEG00000010614 Nomascus leucogenys ENSNLEG00000010614 I 0.000
BBX Ornithorhynchus anatinus ENSOANG00000007497 I 0.000
ENSOARG00000007985 Ovis aries ENSOARG00000007985 I 0.000
ENSOARG00000018829 Ovis aries ENSOARG00000018829 I 0.000
BBX Oryctolagus cuniculus ENSOCUG00000001686 I 0.000
ENSOCUG00000006458 Oryctolagus cuniculus ENSOCUG00000006458 I 0.000
CIC Otolemur garnettii ENSOGAG00000003964 I 0.000
BBX Otolemur garnettii ENSOGAG00000008056 I 0.000
ENSONIG00000004775 Oreochromis niloticus ENSONIG00000004775 I 0.000
ENSONIG00000004979 Oreochromis niloticus ENSONIG00000004979 I 0.000
ENSONIG00000013108 Oreochromis niloticus ENSONIG00000013108 I 0.000
BBX Ochotona princeps ENSOPRG00000017013 I 0.000
bbx Oryzias latipes ENSORLG00000005486 I 0.000
cica Oryzias latipes ENSORLG00000007091 I 0.000
cicb Oryzias latipes ENSORLG00000013259 I 0.000
ENSPANG00000009039 Papio anubis ENSPANG00000009039 I 0.000
ENSPANG00000018335 Papio anubis ENSPANG00000018335 I 0.000
BBX Procavia capensis ENSPCAG00000013443 I 0.000
CIC Procavia capensis ENSPCAG00000017001 I 0.000
ENSPFOG00000000116 Poecilia formosa ENSPFOG00000000116 I 0.000
ENSPFOG00000000813 Poecilia formosa ENSPFOG00000000813 I 0.000
ENSPFOG00000016231 Poecilia formosa ENSPFOG00000016231 I 0.000
ENSPPYG00000010041 Pongo abelii ENSPPYG00000010041 I 0.000
ENSPPYG00000013578 Pongo abelii ENSPPYG00000013578 I 0.000
ENSPSIG00000015872 Pelodiscus sinensis ENSPSIG00000015872 I 0.000
CIC Pan troglodytes ENSPTRG00000011051 I 0.000
BBX Pan troglodytes ENSPTRG00000015187 I 0.000
BBX Pteropus vampyrus ENSPVAG00000010534 I 0.000
CIC Pteropus vampyrus ENSPVAG00000016806 I 0.000
Bbx Rattus norvegicus ENSRNOG00000001971 I 0.000
Cic Rattus norvegicus ENSRNOG00000056118 I 0.000
ENSSHAG00000003009 Sarcophilus harrisii ENSSHAG00000003009 I 0.000
CIC Sus scrofa ENSSSCG00000003030 I 0.000
BBX Sus scrofa ENSSSCG00000011943 I 0.000
ENSSSCG00000025539 Sus scrofa ENSSSCG00000025539 I 0.000
ENSSTOG00000000852 Ictidomys tridecemlineatus ENSSTOG00000000852 I 0.000
CIC Tupaia belangeri ENSTBEG00000009044 I 0.000
ENSTGUG00000013611 Taeniopygia guttata ENSTGUG00000013611 I 0.000
CIC Tetraodon nigroviridis ENSTNIG00000003521 I 0.000
bbx Tetraodon nigroviridis ENSTNIG00000008596 I 0.000
bbx Takifugu rubripes ENSTRUG00000003077 I 0.000
CIC Takifugu rubripes ENSTRUG00000007193 I 0.000
ENSTSYG00000000857 Tarsius syrichta ENSTSYG00000000857 I 0.000
BBX Tursiops truncatus ENSTTRG00000013182 I 0.000
CIC Tursiops truncatus ENSTTRG00000013873 I 0.000
BBX Vicugna pacos ENSVPAG00000007818 I 0.000
ENSXMAG00000009457 Xiphophorus maculatus ENSXMAG00000009457 I 0.000
GA16961 Drosophila pseudoobscura FBgn0076975 I 0.000
GF17645 Drosophila ananassae FBgn0094663 I 0.000
GF20922 Drosophila ananassae FBgn0097927 I 0.000
GG19727 Drosophila erecta FBgn0111928 I 0.000
GG23823 Drosophila erecta FBgn0115962 I 0.000
GH23608 Drosophila grimshawi FBgn0131065 I 0.000
GI21541 Drosophila mojavensis FBgn0144271 I 0.000
GM23082 Drosophila sechellia FBgn0177950 I 0.000
GM23104 Drosophila sechellia FBgn0177972 I 0.000
GD19345 Drosophila simulans FBgn0190847 I 0.000
GJ16014 Drosophila virilis FBgn0203199 I 0.000
GJ23448 Drosophila virilis FBgn0210547 I 0.000
GK10919 Drosophila willistoni FBgn0212930 I 0.000
GK25081 Drosophila willistoni FBgn0227040 I 0.000
GE17925 Drosophila yakuba FBgn0235361 I 0.000
GE25659 Drosophila yakuba FBgn0242721 I 0.000
GB43462 Apis mellifera GB43462 I 0.000
GB48450 Apis mellifera GB48450 I 0.000
HMEL012996 Heliconius melpomene HMEL012996 I 0.000
ISCW010061 Ixodes scapularis ISCW010061 I 0.000
KGM_16790 Danaus plexippus KGM_16790 I 0.000
KGM_16941 Danaus plexippus KGM_16941 I 0.000
L798_02329 Zootermopsis nevadensis L798_02329 I 0.000
L798_08623 Zootermopsis nevadensis L798_08623 I 0.000
LOAG_17202 Loa loa LOAG_17202 I 0.000
LotgiG89909 Lottia gigantea LotgiG89909 I 0.000
M404DRAFT_998162 Pisolithus tinctorius M404DRAFT_998162 I 0.000
MCINX015089 Melitaea cinxia MCINX015089 I 0.000
NV10910 Nasonia vitripennis NV10910 I 0.000
PAXRUDRAFT_130978 Paxillus rubicundulus PAXRUDRAFT_130978 I 0.000
PHUM079880 Pediculus humanus PHUM079880 I 0.000
PHUM230960 Pediculus humanus PHUM230960 I 0.000
PISMIDRAFT_61363 Pisolithus microcarpus PISMIDRAFT_61363 I 0.000
POSPLDRAFT_104619 Postia placenta POSPLDRAFT_104619 I 0.000
POSPLDRAFT_98507 Postia placenta POSPLDRAFT_98507 I 0.000
RPRC001090 Rhodnius prolixus RPRC001090 I 0.000
SCLCIDRAFT_120630 Scleroderma citrinum SCLCIDRAFT_120630 I 0.000
SINV12425 Solenopsis invicta SINV12425 I 0.000
SMAR009315 Strigamia maritima SMAR009315 I 0.000
SMAR012744 Strigamia maritima SMAR012744 I 0.000
Smp_142600 Schistosoma mansoni Smp_142600 I 0.000
SPU_025292 Strongylocentrotus purpuratus SPU_025292 I 0.000
TC004697 Tribolium castaneum TC004697 I 0.000
TC007499 Tribolium castaneum TC007499 I 0.000
tetur21g00740 Tetranychus urticae tetur21g00740 I 0.000
tetur23g01950 Tetranychus urticae tetur23g01950 I 0.000
WBGene00241539 Onchocerca volvulus WBGene00241539 I 0.000
YQE_03282 Dendroctonus ponderosae YQE_03282 I 0.000
YQE_06837 Dendroctonus ponderosae YQE_06837 I 0.000
TVAG_344020 Trichomonas vaginalis TVAG_344020 I 0.000
Aan_R014485 Calypte anna Aan_R014485 I 0.000
Afo_R006638 Aptenodytes forsteri Afo_R006638 I 0.000
Alligator_sinensis_CCG005631.1 Alligator sinensis Alligator_sinensis_CCG005631.1 I 0.000
Alligator_sinensis_CCG019960.1 Alligator sinensis Alligator_sinensis_CCG019960.1 I 0.000
Brh_R008020 Buceros rhinoceros Brh_R008020 I 0.000
Cflo_01544--XP_624175.2_APIME Camponotus floridanus Cflo_01544--XP_624175.2_APIME I 0.000
Cflo_04908--XP_624175.2_APIME Camponotus floridanus Cflo_04908--XP_624175.2_APIME I 0.000
Cmyd_10001800 Chelonia mydas Cmyd_10001800 I 0.000
Cmyd_10015225 Chelonia mydas Cmyd_10015225 I 0.000
ENSBTAP00000009058-D1 Bos grunniens ENSBTAP00000009058-D1 I 0.000
ENSMMUP00000011518 Macaca fascicularis ENSMMUP00000011518 I 0.000
ENSP00000160740-D1 Bos grunniens ENSP00000160740-D1 I 0.000
ENSP00000160740 Macaca fascicularis ENSP00000160740 I 0.000
Gfo_R002593 Geospiza fortis Gfo_R002593 I 0.000
Hsal_01854--XP_624175.2_APIME Harpegnathos saltator Hsal_01854--XP_624175.2_APIME I 0.000
Hsal_08911--XP_624175.2_APIME Harpegnathos saltator Hsal_08911--XP_624175.2_APIME I 0.000
Myotis_brandtii_Cic_10007129 Myotis brandtii Myotis_brandtii_Cic_10007129 I 0.000
Ogr10275 Ophisaurus gracilis Ogr10275 I 0.000
Ogr11041 Ophisaurus gracilis Ogr11041 I 0.000
Pvit_02469 Pogona vitticeps Pvit_02469 I 0.000
Pvit_02876 Pogona vitticeps Pvit_02876 I 0.000
Tal_R013114 Tyto alba Tal_R013114 I 0.000
gw.448.64.1 Branchiostoma floridae gw.448.64.1 I 0.000
gw.46.292.1 Branchiostoma floridae gw.46.292.1 I 0.000
Ocbimv22001036m.g Octopus bimaculoides Ocbimv22001036m.g I 0.000
Ocbimv22037932m.g Octopus bimaculoides Ocbimv22037932m.g I 0.000
Sakowv30039572m.g Saccoglossus kowalevskii Sakowv30039572m.g I 0.000
Sakowv30042695m.g Saccoglossus kowalevskii Sakowv30042695m.g I 0.000
CLEC003268 Cimex lectularius CLEC003268 I 0.000
HHAL000065-PA Halyomorpha halys HHAL000065-PA I 0.000
LCUP006498 Lucilia cuprina LCUP006498 I 0.000
LCUP009387 Lucilia cuprina LCUP009387 I 0.000
LDEC000948 Leptinotarsa decemlineata LDEC000948 I 0.000
Sjc_0093980 Schistosoma japonicum Sjc_0093980 I 0.000
SMU15002098 Schmidtea mediterranea SMU15002098 I 0.000
cic Xenopus tropicalis XB-GENE-6467430 I 0.000
bbx.L Xenopus laevis XB-GENE-981431 I 0.000
XP_002932333 Xenopus tropicalis XP_002932333 I 0.000
AALB003439 Anopheles albimanus AALB003439 I 0.000
AARA001217 Anopheles arabiensis AARA001217 I 0.000
ACHR006446 Anopheles christyi ACHR006446 I 0.000
ACUA015009 Anopheles culicifacies ACUA015009 I 0.000
ADIR003322 Anopheles dirus ADIR003322 I 0.000
AEPI005675 Anopheles epiroticus AEPI005675 I 0.000
AFAF009600 Anopheles farauti AFAF009600 I 0.000
AFAF016820 Anopheles farauti AFAF016820 I 0.000
AFUN003674 Anopheles funestus AFUN003674 I 0.000
AFUN006011 Anopheles funestus AFUN006011 I 0.000
AMAM016153 Anopheles maculatus AMAM016153 I 0.000
AMAM017484 Anopheles maculatus AMAM017484 I 0.000
AMEC010127 Anopheles melas AMEC010127 I 0.000
AMEM005678 Anopheles merus AMEM005678 I 0.000
AMIN000258 Anopheles minimus AMIN000258 I 0.000
AMIN003810 Anopheles minimus AMIN003810 I 0.000
AQUA008168 Anopheles quadriannulatus AQUA008168 I 0.000
ASTEI00261 Anopheles stephensi ASTEI00261 I 0.000
ASTEI00827 Anopheles stephensi ASTEI00827 I 0.000
ASTEI11145 Anopheles stephensi ASTEI11145 I 0.000
BGLB001462 Biomphalaria glabrata BGLB001462 I 0.000
BGLB009093 Biomphalaria glabrata BGLB009093 I 0.000
LLOJ007756 Lutzomyia longipalpis LLOJ007756 I 0.000
MDOA004531 Musca domestica MDOA004531 I 0.000
MDOA012813 Musca domestica MDOA012813 I 0.000
ANCCAN_00149 Ancylostoma caninum ANCCAN_00149 I 0.000
ANCCEY_04123 Ancylostoma ceylanicum ANCCEY_04123 I 0.000
ANCDUO_05529 Ancylostoma duodenale ANCDUO_05529 I 0.000
ASIM_0000334601 Anisakis simplex ASIM_0000334601 I 0.000
ASU_10300 Ascaris suum ASU_10300 I 0.000
B_00914 Schistosoma haematobium B_00914 I 0.000
csin104163 Clonorchis sinensis csin104163 I 0.000
D915_09544 Fasciola hepatica D915_09544 I 0.000
D917_02434 Trichinella nativa D917_02434 I 0.000
D918_06270 Trichuris suis D918_06270 I 0.000
ECPE_0001539401 Echinostoma caproni ECPE_0001539401 I 0.000
EVEC_0000011601 Enterobius vermicularis EVEC_0000011601 I 0.000
Hba_18941 Heterorhabditis bacteriophora Hba_18941 I 0.000
L596_g5739 Steinernema carpocapsae L596_g5739 I 0.000
L889_g11174 Steinernema feltiae L889_g11174 I 0.000
L892_g3879 Steinernema scapterisci L892_g3879 I 0.000
L893_g26751 Steinernema glaseri L893_g26751 I 0.000
L898_g8837 Steinernema monticolum L898_g8837 I 0.000
nAv.1.0.1.g00032 Acanthocheilonema viteae nAv.1.0.1.g00032 I 0.000
nDi.2.2.2.g01012 Dirofilaria immitis nDi.2.2.2.g01012 I 0.000
nLs.2.1.2.g07996 Litomosoides sigmodontis nLs.2.1.2.g07996 I 0.000
nOo.2.0.1.g00287 Onchocerca ochengi nOo.2.0.1.g00287 I 0.000
OESDEN_00065 Oesophagostomum dentatum OESDEN_00065 I 0.000
OFLC_0001331401 Onchocerca flexuosa OFLC_0001331401 I 0.000
PTRK_0000169700 Parastrongyloides trichosuri PTRK_0000169700 I 0.000
SBAD_0000026401 Soboliphyme baturini SBAD_0000026401 I 0.000
SCUD_0001673101 Schistosoma curassoni SCUD_0001673101 I 0.000
SMUV_0001072601 Syphacia muris SMUV_0001072601 I 0.000
SPAL_0001296500 Strongyloides papillosus SPAL_0001296500 I 0.000
SSTP_0000494800 Strongyloides stercoralis SSTP_0000494800 I 0.000
SVE_0052600 Strongyloides venezuelensis SVE_0052600 I 0.000
SVUK_0000932601 Strongylus vulgaris SVUK_0000932601 I 0.000
T265_01499 Opisthorchis viverrini T265_01499 I 0.000
TCLT_0000608401 Thelazia callipaeda TCLT_0000608401 I 0.000
TMUE_s0223001200 Trichuris muris TMUE_s0223001200 I 0.000
TTRE_0000098801 Trichuris trichiura TTRE_0000098801 I 0.000