Pavir.Gb00606 (Panicum virgatum)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00319 (SRF-TF) IPR002100 Pavir.Gb00606 T258914_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.Gb00606.1.p MADS box 102 124
Pavir.Gb00606.2.p MADS box 91 113
Pavir.Gb00606.3.p MADS box 102 124
Pavir.Gb00606.4.p MADS box 91 113

Links

Other MADS box family TFs
Other Panicum virgatum TFs

27 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ATMYB121 Arabidopsis thaliana AT3G30210 D 0.000
MYB59 Arabidopsis thaliana AT5G59780 D 0.000
AMTR_s00039p00172240 Amborella trichopoda AMTR_s00039p00172240 I 0.000
ATMYB2 Arabidopsis thaliana AT2G47190 I 0.000
MYB305 Arabidopsis thaliana AT3G24310 I 0.000
ATMYB48 Arabidopsis thaliana AT3G46130 I 0.000
AtMYB79 Arabidopsis thaliana AT4G13480 I 0.000
BGIOSGA006030 Oryza indica BGIOSGA006030 I 0.000
BGIOSGA014750 Oryza indica BGIOSGA014750 I 0.000
Bo00954s080 Brassica oleracea Bo00954s080 I 0.000
Bo1g098860 Brassica oleracea Bo1g098860 I 0.000
Bo2g025410 Brassica oleracea Bo2g025410 I 0.000
Bo3g083130 Brassica oleracea Bo3g083130 I 0.000
Bo4g198510 Brassica oleracea Bo4g198510 I 0.000
Bo7g033260 Brassica oleracea Bo7g033260 I 0.000
Bo7g088650 Brassica oleracea Bo7g088650 I 0.000
Bo9g009020 Brassica oleracea Bo9g009020 I 0.000
Bo9g140750 Brassica oleracea Bo9g140750 I 0.000
Bra001941 Brassica rapa Bra001941 I 0.000
Bra002533 Brassica rapa Bra002533 I 0.000
Bra004473 Brassica rapa Bra004473 I 0.000
Bra006694 Brassica rapa Bra006694 I 0.000
Bra015029 Brassica rapa Bra015029 I 0.000
Bra020289 Brassica rapa Bra020289 I 0.000
Bra020744 Brassica rapa Bra020744 I 0.000
Bra021389 Brassica rapa Bra021389 I 0.000
Bra025410 Brassica rapa Bra025410 I 0.000
Bra028369 Brassica rapa Bra028369 I 0.000
Bra036202 Brassica rapa Bra036202 I 0.000
F775_06959 Aegilops tauschii F775_06959 I 0.000
F775_23572 Aegilops tauschii F775_23572 I 0.000
ATMYB48-1 Arabidopsis lyrata fgenesh1_pg.C_scaffold_5001097 I 0.000
fgenesh2_kg.3__2645__AT3G24310.1 Arabidopsis lyrata fgenesh2_kg.3__2645__AT3G24310.1 I 0.000
ATMYB2 Arabidopsis lyrata fgenesh2_kg.4__2955__AT2G47190.1 I 0.000
ATMYB121 Arabidopsis lyrata fgenesh2_kg.5__710__AT3G30210.1 I 0.000
MYB59 Arabidopsis lyrata fgenesh2_kg.8__1928__AT5G59780.3 I 0.000
fgenesh2_kg.9__1__AT4G13480.1 Arabidopsis lyrata fgenesh2_kg.9__1__AT4G13480.1 I 0.000
GLYMA03G38070 Glycine max GLYMA03G38070 I 0.000
GLYMA04G26650 Glycine max GLYMA04G26650 I 0.000
GLYMA06G38340 Glycine max GLYMA06G38340 I 0.000
GLYMA08G27660 Glycine max GLYMA08G27660 I 0.000
GLYMA10G26681 Glycine max GLYMA10G26681 I 0.000
GLYMA10G33450 Glycine max GLYMA10G33450 I 0.000
GLYMA15G14190 Glycine max GLYMA15G14190 I 0.000
GLYMA17G17560 Glycine max GLYMA17G17560 I 0.000
GLYMA18G50881 Glycine max GLYMA18G50881 I 0.000
GLYMA18G50891 Glycine max GLYMA18G50891 I 0.000
GLYMA20G20980 Glycine max GLYMA20G20980 I 0.000
GLYMA20G34140 Glycine max GLYMA20G34140 I 0.000
GRMZM2G027697 Zea mays GRMZM2G027697 I 0.000
GRMZM2G043792 Zea mays GRMZM2G043792 I 0.000
GRMZM2G048136 Zea mays GRMZM2G048136 I 0.000
GSMUA_Achr10G26730_001 Musa acuminata GSMUA_Achr10G26730_001 I 0.000
GSMUA_Achr1G03450_001 Musa acuminata GSMUA_Achr1G03450_001 I 0.000
GSMUA_Achr2G04730_001 Musa acuminata GSMUA_Achr2G04730_001 I 0.000
GSMUA_Achr4G29230_001 Musa acuminata GSMUA_Achr4G29230_001 I 0.000
GSMUA_Achr8G12710_001 Musa acuminata GSMUA_Achr8G12710_001 I 0.000
GSMUA_Achr9G28370_001 Musa acuminata GSMUA_Achr9G28370_001 I 0.000
LPERR04G14700 Leersia perrieri LPERR04G14700 I 0.000
MLOC_6786 Hordeum vulgare MLOC_6786 I 0.000
MTR_1g045610 Medicago truncatula MTR_1g045610 I 0.000
MTR_1g073170 Medicago truncatula MTR_1g073170 I 0.000
OB02G31640 Oryza brachyantha OB02G31640 I 0.000
OB04G25360 Oryza brachyantha OB04G25360 I 0.000
OBART02G24300 Oryza barthii OBART02G24300 I 0.000
OGLUM02G24660 Oryza glumaepatula OGLUM02G24660 I 0.000
OMERI02G23750 Oryza meridionalis OMERI02G23750 I 0.000
ONIVA09G12460 Oryza nivara ONIVA09G12460 I 0.000
OPUNC02G22200 Oryza punctata OPUNC02G22200 I 0.000
ORGLA02G0210000 Oryza glaberrima ORGLA02G0210000 I 0.000
ORGLA04G0153500 Oryza glaberrima ORGLA04G0153500 I 0.000
ORUFI02G25650 Oryza rufipogon ORUFI02G25650 I 0.000
ORUFI04G19690 Oryza rufipogon ORUFI04G19690 I 0.000
OS02G0618400 Oryza sativa OS02G0618400 I 0.000
OS04G0508500 Oryza sativa OS04G0508500 I 0.000
PGSC0003DMG400001376 Solanum tuberosum PGSC0003DMG400001376 I 0.000
PGSC0003DMG400001504 Solanum tuberosum PGSC0003DMG400001504 I 0.000
PGSC0003DMG400027202 Solanum tuberosum PGSC0003DMG400027202 I 0.000
POPTR_0001s24220 Populus trichocarpa POPTR_0001s24220 I 0.000
POPTR_0003s21120 Populus trichocarpa POPTR_0003s21120 I 0.000
POPTR_0004s11460 Populus trichocarpa POPTR_0004s11460 I 0.000
POPTR_0004s11720 Populus trichocarpa POPTR_0004s11720 I 0.000
POPTR_0008s17350 Populus trichocarpa POPTR_0008s17350 I 0.000
POPTR_0009s03240 Populus trichocarpa POPTR_0009s03240 I 0.000
POPTR_0010s07450 Populus trichocarpa POPTR_0010s07450 I 0.000
POPTR_0017s13370 Populus trichocarpa POPTR_0017s13370 I 0.000
POPTR_0019s05190 Populus trichocarpa POPTR_0019s05190 I 0.000
POPTR_0019s05200 Populus trichocarpa POPTR_0019s05200 I 0.000
POPTR_0019s05210 Populus trichocarpa POPTR_0019s05210 I 0.000
PRUPE_ppa006730mg Prunus persica PRUPE_ppa006730mg I 0.000
PRUPE_ppa016385mg Prunus persica PRUPE_ppa016385mg I 0.000
PRUPE_ppa017942mg Prunus persica PRUPE_ppa017942mg I 0.000
PRUPE_ppa024234mg Prunus persica PRUPE_ppa024234mg I 0.000
Sb04g026210 Sorghum bicolor Sb04g026210 I 0.000
Si010822m.g Setaria italica Si010822m.g I 0.000
Si018007m.g Setaria italica Si018007m.g I 0.000
Solyc01g005660.1 Solanum lycopersicum Solyc01g005660.1 I 0.000
Solyc02g089190.1 Solanum lycopersicum Solyc02g089190.1 I 0.000
Solyc05g053150.1 Solanum lycopersicum Solyc05g053150.1 I 0.000
Solyc09g090790.2 Solanum lycopersicum Solyc09g090790.2 I 0.000
TCM_018971 Theobroma cacao TCM_018971 I 0.000
TCM_021037 Theobroma cacao TCM_021037 I 0.000
TCM_024180 Theobroma cacao TCM_024180 I 0.000
TCM_041904 Theobroma cacao TCM_041904 I 0.000
Traes_2AL_605C25CDF Triticum aestivum Traes_2AL_605C25CDF I 0.000
Traes_6AL_89BA7115C Triticum aestivum Traes_6AL_89BA7115C I 0.000
Traes_6BL_8E4A831B6 Triticum aestivum Traes_6BL_8E4A831B6 I 0.000
Traes_6DL_FDFCBA57D1 Triticum aestivum Traes_6DL_FDFCBA57D1 I 0.000
Traes_6DL_FDFCBA57D Triticum aestivum Traes_6DL_FDFCBA57D I 0.000
TRIUR3_18020 Triticum urartu TRIUR3_18020 I 0.000
TRIUR3_31527 Triticum urartu TRIUR3_31527 I 0.000
VIT_05s0049g02260 Vitis vinifera VIT_05s0049g02260 I 0.000
VIT_08s0007g07230 Vitis vinifera VIT_08s0007g07230 I 0.000
ATMYB121 Vitis vinifera VIT_14s0083g01060 I 0.000
Ca_07872 Cicer arietinum Ca_07872 I 0.000
Ca_20437 Cicer arietinum Ca_20437 I 0.000
Cla007745 Citrullus lanatus Cla007745 I 0.000
Cla016762 Citrullus lanatus Cla016762 I 0.000
Cla021798 Citrullus lanatus Cla021798 I 0.000
Pm009050 Prunus mume Pm009050 I 0.000
Pm015392 Prunus mume Pm015392 I 0.000
29788.m000340 Ricinus communis 29788.m000340 I 0.000
cassava13589.valid.m1 Manihot esculenta cassava13589.valid.m1 I 0.000
cassava24389.valid.m1 Manihot esculenta cassava24389.valid.m1 I 0.000
cassava24463.valid.m1 Manihot esculenta cassava24463.valid.m1 I 0.000
cassava27189.m1 Manihot esculenta cassava27189.m1 I 0.000
cassava6348.valid.m1 Manihot esculenta cassava6348.valid.m1 I 0.000
cassava9274.m1 Manihot esculenta cassava9274.m1 I 0.000
cassava9891.m1 Manihot esculenta cassava9891.m1 I 0.000
Cucsa.238540 Cucumis sativus Cucsa.238540 I 0.000
Cucsa.255900 Cucumis sativus Cucsa.255900 I 0.000
Cucsa.383230 Cucumis sativus Cucsa.383230 I 0.000
mgf002201m Mimulus guttatus mgf002201m I 0.000
mgf004640m Mimulus guttatus mgf004640m I 0.000
Aquca_002_00902 Aquilegia coerulea Aquca_002_00902 I 0.000
Aquca_003_00309 Aquilegia coerulea Aquca_003_00309 I 0.000
Aquca_025_00059 Aquilegia coerulea Aquca_025_00059 I 0.000
Bostr.0556s0619 Boechera stricta Bostr.0556s0619 I 0.000
Bostr.19424s0195 Boechera stricta Bostr.19424s0195 I 0.000
Bostr.2021s0106 Boechera stricta Bostr.2021s0106 I 0.000
Bostr.25993s0044 Boechera stricta Bostr.25993s0044 I 0.000
Cagra.0454s0003 Capsella grandiflora Cagra.0454s0003 I 0.000
Cagra.1138s0003 Capsella grandiflora Cagra.1138s0003 I 0.000
Cagra.15509s0001 Capsella grandiflora Cagra.15509s0001 I 0.000
Cagra.6400s0003 Capsella grandiflora Cagra.6400s0003 I 0.000
Carubv10007255m.g Capsella rubella Carubv10007255m.g I 0.000
Carubv10014367m.g Capsella rubella Carubv10014367m.g I 0.000
Carubv10017875m.g Capsella rubella Carubv10017875m.g I 0.000
Carubv10018530m.g Capsella rubella Carubv10018530m.g I 0.000
Carubv10023831m.g Capsella rubella Carubv10023831m.g I 0.000
Ciclev10006914m.g Citrus clementina Ciclev10006914m.g I 0.000
Ciclev10013466m.g Citrus clementina Ciclev10013466m.g I 0.000
Eucgr.A02110 Eucalyptus grandis Eucgr.A02110 I 0.000
Eucgr.B03606 Eucalyptus grandis Eucgr.B03606 I 0.000
Eucgr.H02896 Eucalyptus grandis Eucgr.H02896 I 0.000
Eucgr.I02057 Eucalyptus grandis Eucgr.I02057 I 0.000
Eucgr.K01504 Eucalyptus grandis Eucgr.K01504 I 0.000
evm.TU.supercontig_119.55 Carica papaya evm.TU.supercontig_119.55 I 0.000
evm.TU.supercontig_190.35 Carica papaya evm.TU.supercontig_190.35 I 0.000
evm.TU.supercontig_59.23 Carica papaya evm.TU.supercontig_59.23 I 0.000
gene28293-v1.0-hybrid Fragaria vesca gene28293-v1.0-hybrid I 0.000
Gorai.001G090100 Gossypium raimondii Gorai.001G090100 I 0.000
Gorai.001G107900 Gossypium raimondii Gorai.001G107900 I 0.000
Gorai.001G207500 Gossypium raimondii Gorai.001G207500 I 0.000
Gorai.005G054900 Gossypium raimondii Gorai.005G054900 I 0.000
Gorai.006G073500 Gossypium raimondii Gorai.006G073500 I 0.000
Gorai.006G254200 Gossypium raimondii Gorai.006G254200 I 0.000
Gorai.007G350500 Gossypium raimondii Gorai.007G350500 I 0.000
Lus10005079.g Linum usitatissimum Lus10005079.g I 0.000
Lus10005886.g Linum usitatissimum Lus10005886.g I 0.000
Lus10009037.g Linum usitatissimum Lus10009037.g I 0.000
Lus10014453.g Linum usitatissimum Lus10014453.g I 0.000
Lus10023711.g Linum usitatissimum Lus10023711.g I 0.000
Lus10034372.g Linum usitatissimum Lus10034372.g I 0.000
MDP0000133412 Malus domestica MDP0000133412 I 0.000
MDP0000183451 Malus domestica MDP0000183451 I 0.000
MDP0000286143 Malus domestica MDP0000286143 I 0.000
MDP0000655330 Malus domestica MDP0000655330 I 0.000
MDP0000723614 Malus domestica MDP0000723614 I 0.000
MDP0000791870 Malus domestica MDP0000791870 I 0.000
orange1.1g023677m.g Citrus sinensis orange1.1g023677m.g I 0.000
orange1.1g047839m.g Citrus sinensis orange1.1g047839m.g I 0.000
orange1.1g047854m.g Citrus sinensis orange1.1g047854m.g I 0.000
Pavir.Aa01294 Panicum virgatum Pavir.Aa01294 I 0.000
Pavir.Ga01308 Panicum virgatum Pavir.Ga01308 I 0.000
Pavir.J37992 Panicum virgatum Pavir.J37992 I 0.000
SapurV1A.0008s0940 Salix purpurea SapurV1A.0008s0940 I 0.000
SapurV1A.0008s0950 Salix purpurea SapurV1A.0008s0950 I 0.000
SapurV1A.0021s0310 Salix purpurea SapurV1A.0021s0310 I 0.000
SapurV1A.0040s0010 Salix purpurea SapurV1A.0040s0010 I 0.000
SapurV1A.0081s0400 Salix purpurea SapurV1A.0081s0400 I 0.000
SapurV1A.0096s0360 Salix purpurea SapurV1A.0096s0360 I 0.000
SapurV1A.0323s0160 Salix purpurea SapurV1A.0323s0160 I 0.000
SapurV1A.0489s0220 Salix purpurea SapurV1A.0489s0220 I 0.000
SapurV1A.0553s0100 Salix purpurea SapurV1A.0553s0100 I 0.000
SapurV1A.0553s0110 Salix purpurea SapurV1A.0553s0110 I 0.000
SapurV1A.0598s0010 Salix purpurea SapurV1A.0598s0010 I 0.000
Thhalv10001584m.g Eutrema salsugineum Thhalv10001584m.g I 0.000
Thhalv10002634m.g Eutrema salsugineum Thhalv10002634m.g I 0.000
Thhalv10002648m.g Eutrema salsugineum Thhalv10002648m.g I 0.000
Thhalv10005370m.g Eutrema salsugineum Thhalv10005370m.g I 0.000
Thhalv10014524m.g Eutrema salsugineum Thhalv10014524m.g I 0.000
Thhalv10026896m.g Eutrema salsugineum Thhalv10026896m.g I 0.000