Bra030496 (Brassica rapa)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00249 (Myb_DNA-binding) IPR014778 Bra030496 T268049_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
LHY
M06997_2.00 		Arabidopsis thaliana
NWAAATATCT
AGATATTTWN		 Dap-seq
OMalley et al.(2016)
LHY1_col_a 		0.863 0.935
LHY
M06998_2.00 		Arabidopsis thaliana
NNWAAATATCT
AGATATTTWNN		 Dap-seq
OMalley et al.(2016)
LHY1_colamp_a 		0.863 0.935
OS08G0157600
M02330_2.00 		Oryza sativa
DNRTATCHN
NDGATAYNH		 PBM
Weirauch et al.(2014)
pTH7793 		0.853 0.870
RVE7
M01069_2.00 		Arabidopsis thaliana
NDHRWATCNN
NNGATWYDHN		 PBM
Sullivan et al.(2014)
pTH7081 		0.810 0.804
RVE7
M02286_2.00 		Arabidopsis thaliana
NDARTATCH
DGATAYTHN		 PBM
Weirauch et al.(2014)
pTH7277 		0.810 0.804
RVE7L
M07071_2.00 		Arabidopsis thaliana
NNNNWAAATATCWNN
NNWGATATTTWNNNN		 Dap-seq
OMalley et al.(2016)
AT3G10113_col_a 		0.810 0.804
RVE7
M07008_2.00 		Arabidopsis thaliana
NNWAAATATCT
AGATATTTWNN		 Dap-seq
OMalley et al.(2016)
EPR1_colamp_a 		0.810 0.804
RVE7
M07009_2.00 		Arabidopsis thaliana
NWAAATATCTHN
NDAGATATTTWN		 Dap-seq
OMalley et al.(2016)
EPR1_col 		0.810 0.804
CCA1
M00875_2.00 		Arabidopsis thaliana
NDNRWATCN
NGATWYNHN		 PBM
Franco-Zorrilla et al.(2014)
CCA1 		0.808 0.826
CCA1
M11039_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$CCA1_Q5 		0.808 0.826
RVE1
M00879_2.00 		Arabidopsis thaliana
AAATATCT
AGATATTT		 PBM
Franco-Zorrilla et al.(2014)
RVE1 		0.739 0.761
RVE1
M07128_2.00 		Arabidopsis thaliana
NNNWAAATATCTNN
NNAGATATTTWNNN		 Dap-seq
OMalley et al.(2016)
RVE1_col_a 		0.739 0.761
RVE1
M07129_2.00 		Arabidopsis thaliana
NNWAATATCW
WGATATTWNN		 Dap-seq
OMalley et al.(2016)
RVE1_colamp_a 		0.739 0.761
PK08316.1
M02350_2.00 		Cannabis sativa
NNNRWATCNN
NNGATWYNNN		 PBM
Weirauch et al.(2014)
pTH9488 		0.738 0.739
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bra030496.1-P Myb 27 72

Links

Other Myb/SANT family TFs
Other Brassica rapa TFs

294 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ILR3 Arabidopsis thaliana AT5G54680 D
Carubv10026758m.g Capsella rubella Carubv10026758m.g I
cassava24574.valid.m1 Manihot esculenta cassava24574.valid.m1 I
cassava37031.valid.m1 Manihot esculenta cassava37031.valid.m1 I
cassava37032.valid.m1 Manihot esculenta cassava37032.valid.m1 I
Cucsa.267130 Cucumis sativus Cucsa.267130 I
Cucsa.267170 Cucumis sativus Cucsa.267170 I
e_gw1.229.33.1 Physcomitrella patens e_gw1.229.33.1 I
estExt_fgenesh1_pg.C_1360017 Physcomitrella patens estExt_fgenesh1_pg.C_1360017 I
estExt_gwp_gw1.C_2460032 Physcomitrella patens estExt_gwp_gw1.C_2460032 I
fgenesh1_pg.scaffold_13000185 Physcomitrella patens fgenesh1_pg.scaffold_13000185 I
fgenesh1_pg.scaffold_31000088 Physcomitrella patens fgenesh1_pg.scaffold_31000088 I
Aquca_005_00425 Aquilegia coerulea Aquca_005_00425 I
Bostr.26833s0797 Boechera stricta Bostr.26833s0797 I
Cagra.1629s0040 Capsella grandiflora Cagra.1629s0040 I
Pm029465 Prunus mume Pm029465 I
Ciclev10009354m.g Citrus clementina Ciclev10009354m.g I
Thhalv10014564m.g Eutrema salsugineum Thhalv10014564m.g I
Eucgr.F03420 Eucalyptus grandis Eucgr.F03420 I
evm.TU.supercontig_97.78 Carica papaya evm.TU.supercontig_97.78 I
gene03303-v1.0-hybrid Fragaria vesca gene03303-v1.0-hybrid I
gene24654-v1.0-hybrid Fragaria vesca gene24654-v1.0-hybrid I
Lus10011167.g Linum usitatissimum Lus10011167.g I
Lus10043076.g Linum usitatissimum Lus10043076.g I
MDP0000264803 Malus domestica MDP0000264803 I
orange1.1g026599m.g Citrus sinensis orange1.1g026599m.g I
SapurV1A.0712s0010 Salix purpurea SapurV1A.0712s0010 I
POPTR_0011s13580 Populus trichocarpa POPTR_0011s13580 I
Bra002964 Brassica rapa Bra002964 I
Bra022738 Brassica rapa Bra022738 I
ILR3 Arabidopsis lyrata fgenesh2_kg.8__1365__AT5G54680.1 I
GLYMA06G41620 Glycine max GLYMA06G41620 I
GLYMA12G34300 Glycine max GLYMA12G34300 I
GLYMA13G36260 Glycine max GLYMA13G36260 I
GLYMA15G06803 Glycine max GLYMA15G06803 I
GLYMA15G06860 Glycine max GLYMA15G06860 I
GSMUA_Achr8G33180_001 Musa acuminata GSMUA_Achr8G33180_001 I
MTR_2g082640 Medicago truncatula MTR_2g082640 I
MTR_4g081370 Medicago truncatula MTR_4g081370 I
POPTR_0001s44230 Populus trichocarpa POPTR_0001s44230 I
PRUPE_ppa009077mg Prunus persica PRUPE_ppa009077mg I
PRUPE_ppa010730mg Prunus persica PRUPE_ppa010730mg I
SELMODRAFT_165556 Selaginella moellendorffii SELMODRAFT_165556 I
TCM_030082 Theobroma cacao TCM_030082 I
TCM_031118 Theobroma cacao TCM_031118 I
PK23013.1 Cannabis sativa PK23013.1 I
VIT_12s0059g02650 Vitis vinifera VIT_12s0059g02650 I
Ca_06956 Cicer arietinum Ca_06956 I
Ca_16355 Cicer arietinum Ca_16355 I
Cla001735 Citrullus lanatus Cla001735 I
28166.m001054 Ricinus communis 28166.m001054 I
AMTR_s00029p00112130 Amborella trichopoda AMTR_s00029p00112130 N
PDK_20s1322801g004 Phoenix dactylifera PDK_20s1322801g004 N
orange1.1g026646m.g Citrus sinensis orange1.1g026646m.g N
Ciclev10016381m.g Citrus clementina Ciclev10016381m.g N
VIT_00s0532g00050 Vitis vinifera VIT_00s0532g00050 N
AMTR_s00098p00170370 Amborella trichopoda AMTR_s00098p00170370 N