fgenesh1_pg.C_scaffold_3000839 (Arabidopsis lyrata)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00249 (Myb_DNA-binding) IPR014778 fgenesh1_pg.C_scaffold_3000839 T270672_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
MYB3R5
M07116_2.00 		Arabidopsis thaliana
NWWWWNTDRCCGTTR
YAACGGYHANWWWWN		 Dap-seq
OMalley et al.(2016)
MYB3R5_col_a 		0.790 0.893
PK12011.1
M01279_2.00 		Cannabis sativa
HAACGGHHNN
NNDDCCGTTD		 PBM
Lambert et al.(2019)
pTH11423 		0.673 0.757
Q948S5_TOBAC
M11074_2.00 		Nicotiana tabacum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MYBA2_01 		0.671 0.757
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
fgenesh1_pg.C_scaffold_3000839 Myb 686 732
fgenesh1_pg.C_scaffold_3000839 Myb 738 784
fgenesh1_pg.C_scaffold_3000839 Myb 790 835

Links

Other Myb/SANT family TFs
Other Arabidopsis lyrata TFs

139 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Pm024743 Prunus mume Pm024743 I 0.000
Pavir.J02497 Panicum virgatum Pavir.J02497 I 0.000
POPTR_0012s08360 Populus trichocarpa POPTR_0012s08360 I 0.000
POPTR_0015s08880 Populus trichocarpa POPTR_0015s08880 I 0.000
PRUPE_ppa018123mg Prunus persica PRUPE_ppa018123mg I 0.000
PRUPE_ppa026791mg Prunus persica PRUPE_ppa026791mg I 0.000
Solyc06g071520.1 Solanum lycopersicum Solyc06g071520.1 I 0.000
MDP0000319656 Malus domestica MDP0000319656 I 0.000
TCM_012087 Theobroma cacao TCM_012087 I 0.000
MDP0000215359 Malus domestica MDP0000215359 I 0.000
MYB98 Vitis vinifera VIT_17s0000g08550 I 0.000
Ca_17294 Cicer arietinum Ca_17294 I 0.000
MDP0000199939 Malus domestica MDP0000199939 I 0.000
Cla019490 Citrullus lanatus Cla019490 I 0.000
Pm000541 Prunus mume Pm000541 I 0.000
AMTR_s00096p00076220 Amborella trichopoda AMTR_s00096p00076220 I 0.000
cassava19706.m1 Manihot esculenta cassava19706.m1 I 0.000
Lus10005864.g Linum usitatissimum Lus10005864.g I 0.000
cassava9008.m1 Manihot esculenta cassava9008.m1 I 0.000
Cucsa.196850 Cucumis sativus Cucsa.196850 I 0.000
mgf024290m Mimulus guttatus mgf024290m I 0.000
Aquca_045_00020 Aquilegia coerulea Aquca_045_00020 I 0.000
Gorai.008G295800 Gossypium raimondii Gorai.008G295800 I 0.000
Cagra.0891s0081 Capsella grandiflora Cagra.0891s0081 I 0.000
gene32198-v1.0-hybrid Fragaria vesca gene32198-v1.0-hybrid I 0.000
gene08006-v1.0-hybrid Fragaria vesca gene08006-v1.0-hybrid I 0.000
Carubv10028458m.g Capsella rubella Carubv10028458m.g I 0.000
evm.TU.supercontig_76.38 Carica papaya evm.TU.supercontig_76.38 I 0.000
Eucgr.B00301 Eucalyptus grandis Eucgr.B00301 I 0.000
ORUFI06G04170 Oryza rufipogon ORUFI06G04170 I 0.000
fgenesh2_kg.3__2684__AT5G58850.1 Arabidopsis lyrata fgenesh2_kg.3__2684__AT5G58850.1 I 0.000
fgenesh2_kg.277__1__AT5G58850.1 Arabidopsis lyrata fgenesh2_kg.277__1__AT5G58850.1 I 0.000
GLYMA05G02300 Glycine max GLYMA05G02300 I 0.000
Bra020346 Brassica rapa Bra020346 I 0.000
Bra006744 Brassica rapa Bra006744 I 0.000
Thhalv10016057m.g Eutrema salsugineum Thhalv10016057m.g I 0.000
Bo3g018490 Brassica oleracea Bo3g018490 I 0.000
Bo2g028290 Brassica oleracea Bo2g028290 I 0.000
SapurV1A.2163s0040 Salix purpurea SapurV1A.2163s0040 I 0.000
BGIOSGA022369 Oryza indica BGIOSGA022369 I 0.000
SapurV1A.0571s0110 Salix purpurea SapurV1A.0571s0110 I 0.000
Pavir.J02718 Panicum virgatum Pavir.J02718 I 0.000
OB06G13860 Oryza brachyantha OB06G13860 I 0.000
OBART06G04170 Oryza barthii OBART06G04170 I 0.000
OGLUM06G04280 Oryza glumaepatula OGLUM06G04280 I 0.000
OLONG_010000 Oryza longistaminata OLONG_010000 I 0.000
OMERI06G04840 Oryza meridionalis OMERI06G04840 I 0.000
ONIVA06G05390 Oryza nivara ONIVA06G05390 I 0.000
OPUNC06G03990 Oryza punctata OPUNC06G03990 I 0.000
ORGLA06G0038500 Oryza glaberrima ORGLA06G0038500 I 0.000
OS06G0162700 Oryza sativa OS06G0162700 I 0.000
PDK_20s1782461g001 Phoenix dactylifera PDK_20s1782461g001 N 0.000
Gorai.001G115300 Gossypium raimondii Gorai.001G115300 N 0.000
evm.TU.supercontig_112.44 Carica papaya evm.TU.supercontig_112.44 N 0.000
LjSGA_147332.1 Lotus japonicus LjSGA_147332.1 N 0.000
chr4.CM0042.120.nd Lotus japonicus chr4.CM0042.120.nd N 0.000
Gorai.011G044100 Gossypium raimondii Gorai.011G044100 N 0.000
Thhalv10027294m.g Eutrema salsugineum Thhalv10027294m.g N 0.000
Lus10018220.g Linum usitatissimum Lus10018220.g N 0.000
Lus10040684.g Linum usitatissimum Lus10040684.g N 0.000
Thhalv10015404m.g Eutrema salsugineum Thhalv10015404m.g N 0.000
SapurV1A.0772s0150 Salix purpurea SapurV1A.0772s0150 N 0.000
SapurV1A.0041s0840 Salix purpurea SapurV1A.0041s0840 N 0.000
orange1.1g046581m.g Citrus sinensis orange1.1g046581m.g N 0.000
POPTR_0001s25710 Populus trichocarpa POPTR_0001s25710 N 0.000
MYB64 Arabidopsis thaliana AT5G11050 N 0.000
MYB64 Arabidopsis lyrata fgenesh2_kg.6__1071__AT5G11050.1 N 0.000
GLYMA02G39070 Glycine max GLYMA02G39070 N 0.000
GLYMA05G08761 Glycine max GLYMA05G08761 N 0.000
GLYMA14G37140 Glycine max GLYMA14G37140 N 0.000
GLYMA18G07360 Glycine max GLYMA18G07360 N 0.000
GSMUA_Achr10G00770_001 Musa acuminata GSMUA_Achr10G00770_001 N 0.000
GSMUA_Achr6G33700_001 Musa acuminata GSMUA_Achr6G33700_001 N 0.000
GSMUA_Achr8G02290_001 Musa acuminata GSMUA_Achr8G02290_001 N 0.000
MTR_3g463400 Medicago truncatula MTR_3g463400 N 0.000
MTR_5g070020 Medicago truncatula MTR_5g070020 N 0.000
PGSC0003DMG400044141 Solanum tuberosum PGSC0003DMG400044141 N 0.000
Eucgr.J01929 Eucalyptus grandis Eucgr.J01929 N 0.000
Solyc06g076840.1 Solanum lycopersicum Solyc06g076840.1 N 0.000
TCM_041651 Theobroma cacao TCM_041651 N 0.000
Cla008304 Citrullus lanatus Cla008304 N 0.000
29681.m001315 Ricinus communis 29681.m001315 N 0.000
cassava26507.m1 Manihot esculenta cassava26507.m1 N 0.000
cassava26674.m1 Manihot esculenta cassava26674.m1 N 0.000
Cucsa.146980 Cucumis sativus Cucsa.146980 N 0.000
Bostr.20821s0001 Boechera stricta Bostr.20821s0001 N 0.000
Bostr.23997s0007 Boechera stricta Bostr.23997s0007 N 0.000
Cagra.1398s0045 Capsella grandiflora Cagra.1398s0045 N 0.000
Carubv10003695m.g Capsella rubella Carubv10003695m.g N 0.000
Ciclev10030254m.g Citrus clementina Ciclev10030254m.g N 0.000