fgenesh2_kg.277__1__AT5G58850.1 (Arabidopsis lyrata)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00249 (Myb_DNA-binding) IPR014778 fgenesh2_kg.277__1__AT5G58850.1 T270757_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
MYB98
M02301_2.00 		Arabidopsis thaliana
NNGTAACGKMN
NKMCGTTACNN		 PBM
Weirauch et al.(2014)
pTH8148 		0.672 0.753
MYB98
M07108_2.00 		Arabidopsis thaliana
DWWWHGTAACGKWHD
HDWMCGTTACDWWWH		 Dap-seq
OMalley et al.(2016)
MYB98_col_a 		0.672 0.753
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
fgenesh2_kg.277__1__AT5G58850.1 Myb 105 151
fgenesh2_kg.277__1__AT5G58850.1 Myb 157 202

Links

Other Myb/SANT family TFs
Other Arabidopsis lyrata TFs

118 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Bostr.13129s0308 Boechera stricta Bostr.13129s0308 I 0.000
GIS2 Arabidopsis thaliana AT5G06650 I 0.000
Si028367m.g Setaria italica Si028367m.g I 0.000
Solyc10g078990.1 Solanum lycopersicum Solyc10g078990.1 I 0.000
Traes_5AL_81EFE5211 Triticum aestivum Traes_5AL_81EFE5211 I 0.000
Traes_5BL_3E6B0CD61 Triticum aestivum Traes_5BL_3E6B0CD61 I 0.000
Traes_5DL_B97546DA11 Triticum aestivum Traes_5DL_B97546DA11 I 0.000
TRIUR3_22340 Triticum urartu TRIUR3_22340 I 0.000
Ca_08116 Cicer arietinum Ca_08116 I 0.000
Pm008291 Prunus mume Pm008291 I 0.000
30076.m004693 Ricinus communis 30076.m004693 I 0.000
e_gw1.34.233.1 Physcomitrella patens e_gw1.34.233.1 I 0.000
PGSC0003DMG400011450 Solanum tuberosum PGSC0003DMG400011450 I 0.000
Carubv10003820m.g Capsella rubella Carubv10003820m.g I 0.000
Carubv10018785m.g Capsella rubella Carubv10018785m.g I 0.000
evm.TU.supercontig_1307.1 Carica papaya evm.TU.supercontig_1307.1 I 0.000
evm.TU.supercontig_51.84 Carica papaya evm.TU.supercontig_51.84 I 0.000
gene05169-v1.0-hybrid Fragaria vesca gene05169-v1.0-hybrid I 0.000
gene05263-v1.0-hybrid Fragaria vesca gene05263-v1.0-hybrid I 0.000
Lus10017229.g Linum usitatissimum Lus10017229.g I 0.000
MDP0000121370 Malus domestica MDP0000121370 I 0.000
MDP0000165710 Malus domestica MDP0000165710 I 0.000
Pavir.Ha01090 Panicum virgatum Pavir.Ha01090 I 0.000
SapurV1A.0052s0050 Salix purpurea SapurV1A.0052s0050 I 0.000
MLOC_4507 Hordeum vulgare MLOC_4507 I 0.000
BGIOSGA029710 Oryza indica BGIOSGA029710 I 0.000
Bo2g007320 Brassica oleracea Bo2g007320 I 0.000
Bra028724 Brassica rapa Bra028724 I 0.000
GIS2 Arabidopsis lyrata fgenesh2_kg.6__609__AT5G06650.1 I 0.000
GLYMA03G37610 Glycine max GLYMA03G37610 I 0.000
GLYMA19G40220 Glycine max GLYMA19G40220 I 0.000
GRMZM2G703281 Zea mays GRMZM2G703281 I 0.000
LPERR09G07930 Leersia perrieri LPERR09G07930 I 0.000
OS09G0431900 Oryza sativa OS09G0431900 I 0.000
OB09G17800 Oryza brachyantha OB09G17800 I 0.000
OBART09G11250 Oryza barthii OBART09G11250 I 0.000
OGLUM09G11630 Oryza glumaepatula OGLUM09G11630 I 0.000
OLONG_006424 Oryza longistaminata OLONG_006424 I 0.000
OMERI09G08780 Oryza meridionalis OMERI09G08780 I 0.000
ONIVA09G10990 Oryza nivara ONIVA09G10990 I 0.000
OPUNC09G09720 Oryza punctata OPUNC09G09720 I 0.000
ORGLA09G0084000 Oryza glaberrima ORGLA09G0084000 I 0.000
ORUFI09G12050 Oryza rufipogon ORUFI09G12050 I 0.000
Ca_23376 Cicer arietinum Ca_23376 N 0.000
MTR_2g067740 Medicago truncatula MTR_2g067740 N 0.000
MLOC_38864 Hordeum vulgare MLOC_38864 N 0.000
Bostr.29827s0107 Boechera stricta Bostr.29827s0107 N 0.000
TRIUR3_30765 Triticum urartu TRIUR3_30765 N 0.000
fgenesh2_kg.6__2677__AT5G27880.1 Arabidopsis lyrata fgenesh2_kg.6__2677__AT5G27880.1 N 0.000
F775_05447 Aegilops tauschii F775_05447 N 0.000
Bra020571 Brassica rapa Bra020571 N 0.000