Solyc03g059200.1 (Solanum lycopersicum)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00249 (Myb_DNA-binding) IPR014778 Solyc03g059200.1 T280070_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
RAX3
M02700_2.00 		Arabidopsis thaliana
SCACCTACCHCCN
NGGDGGTAGGTGS		 SELEX
Mathelier et al.(2014)
MA0576.1 		0.662 0.656
RAX3
M11043_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$ATMYB84_01 		0.662 0.656
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Solyc03g059200.1.1 Myb 14 61
Solyc03g059200.1.1 Myb 67 112

Links

Other Myb/SANT family TFs
Other Solanum lycopersicum TFs

123 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
TRAES3BF031900060CFD_g Triticum aestivum TRAES3BF031900060CFD_g I
chr5.CM0180.220.nd Lotus japonicus chr5.CM0180.220.nd I
Pavir.Eb02691 Panicum virgatum Pavir.Eb02691 I
OB01G34910 Oryza brachyantha OB01G34910 I
F775_05073 Aegilops tauschii F775_05073 I
BRADI2G45927 Brachypodium distachyon BRADI2G45927 I
Lus10015268.g Linum usitatissimum Lus10015268.g N
cassava6449.valid.m1 Manihot esculenta cassava6449.valid.m1 N
cassava6450.valid.m1 Manihot esculenta cassava6450.valid.m1 N
cassava7606.valid.m1 Manihot esculenta cassava7606.valid.m1 N
Cucsa.047620 Cucumis sativus Cucsa.047620 N
mgf009922m Mimulus guttatus mgf009922m N
Aquca_022_00160 Aquilegia coerulea Aquca_022_00160 N
Bostr.23794s0665 Boechera stricta Bostr.23794s0665 N
Cagra.7352s0006 Capsella grandiflora Cagra.7352s0006 N
Carubv10024236m.g Capsella rubella Carubv10024236m.g N
Ciclev10017037m.g Citrus clementina Ciclev10017037m.g N
Eucgr.D00306 Eucalyptus grandis Eucgr.D00306 N
gene30574-v1.0-hybrid Fragaria vesca gene30574-v1.0-hybrid N
Gorai.011G042300 Gossypium raimondii Gorai.011G042300 N
29693.m002035 Ricinus communis 29693.m002035 N
Lus10025391.g Linum usitatissimum Lus10025391.g N
MDP0000143506 Malus domestica MDP0000143506 N
MDP0000170945 Malus domestica MDP0000170945 N
MDP0000392251 Malus domestica MDP0000392251 N
MDP0000695104 Malus domestica MDP0000695104 N
orange1.1g031573m.g Citrus sinensis orange1.1g031573m.g N
BGIOSGA004165 Oryza indica BGIOSGA004165 N
Pavir.J05892 Panicum virgatum Pavir.J05892 N
SapurV1A.0560s0060 Salix purpurea SapurV1A.0560s0060 N
Thhalv10017360m.g Eutrema salsugineum Thhalv10017360m.g N
PK22924.1 Cannabis sativa PK22924.1 N
AT2G34450 Arabidopsis thaliana AT2G34450 N
OBART01G25720 Oryza barthii OBART01G25720 N
Bo4g182600 Brassica oleracea Bo4g182600 N
fgenesh2_kg.4__1466__AT2G34450.2 Arabidopsis lyrata fgenesh2_kg.4__1466__AT2G34450.2 N
GLYMA05G25892 Glycine max GLYMA05G25892 N
GLYMA05G25900 Glycine max GLYMA05G25900 N
GLYMA08G08840 Glycine max GLYMA08G08840 N
GRMZM2G024247 Zea mays GRMZM2G024247 N
GSMUA_Achr4G07950_001 Musa acuminata GSMUA_Achr4G07950_001 N
GSMUA_Achr4G15000_001 Musa acuminata GSMUA_Achr4G15000_001 N
LPERR01G21970 Leersia perrieri LPERR01G21970 N
MLOC_7069 Hordeum vulgare MLOC_7069 N
MTR_4g094622 Medicago truncatula MTR_4g094622 N
BGIOSGA004167 Oryza indica BGIOSGA004167 N
Bra021911 Brassica rapa Bra021911 N
OGLUM01G29550 Oryza glumaepatula OGLUM01G29550 N
OMERI01G23390 Oryza meridionalis OMERI01G23390 N
ORGLA01G0210300 Oryza glaberrima ORGLA01G0210300 N
ORUFI01G28620 Oryza rufipogon ORUFI01G28620 N
OS01G0666200 Oryza sativa OS01G0666200 N
POPTR_0004s13630 Populus trichocarpa POPTR_0004s13630 N
Sb03g030540 Sorghum bicolor Sb03g030540 N
Si003021m.g Setaria italica Si003021m.g N
TCM_029514 Theobroma cacao TCM_029514 N
AMTR_s00014p00061870 Amborella trichopoda AMTR_s00014p00061870 N
Ca_05162 Cicer arietinum Ca_05162 N
Ca_05164 Cicer arietinum Ca_05164 N