gw1.66.160.1 (Physcomitrella patens)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00249 (Myb_DNA-binding) IPR014778 gw1.66.160.1 T285131_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Gam1
M02703_2.00 		Hordeum vulgare
NVYAACSGMC
GKCSGTTRBN		 SELEX
Mathelier et al.(2014)
MA0034.1 		0.836 0.849
Gam1
M11061_2.00 		Hordeum vulgare
YAACSRHM
KDYSGTTR		 Transfac
Matys et al.(2006)
P$GAMYB_01 		0.836 0.849
GAM1_ORYSI
M11055_2.00 		Oryza sativa Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$GAMYB_Q2 		0.819 0.839
myb.Ph3
M02704_2.00 		Petunia x hybrida
WAACNGTYW
WRACNGTTW		 SELEX
Mathelier et al.(2014)
MA0054.1 		0.815 0.871
myb.Ph3
M11070_2.00 		Petunia x hybrida
RTAACSGTTTYHW
WDRAAACSGTTAY		 Transfac
Matys et al.(2006)
P$MYBPH3_01 		0.815 0.871
myb.Ph3
M11071_2.00 		Petunia x hybrida
STAACTAACTHHH
DDDAGTTAGTTAS		 Transfac
Matys et al.(2006)
P$MYBPH3_02 		0.815 0.871
Q9FR42_TOBAC
M11076_2.00 		Nicotiana tabacum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MYBAS1_01 		0.805 0.828
MYB101
M07051_2.00 		Arabidopsis thaliana
NWHHNWAACCGWWHH
DDWWCGGTTWNDDWN		 Dap-seq
OMalley et al.(2016)
MYB101_col_a 		0.799 0.817
MYB101
M07052_2.00 		Arabidopsis thaliana
DHHHVTAACYGWHWN
NWDWCRGTTABDDDH		 Dap-seq
OMalley et al.(2016)
MYB101_colamp_a 		0.799 0.817
MYB33
M02306_2.00 		Arabidopsis thaliana
HAACNRHHNN
NNDDYNGTTD		 PBM
Weirauch et al.(2014)
pTH8204 		0.798 0.839
MYB33
M07120_2.00 		Arabidopsis thaliana
NTAACYGWHWH
DWDWCRGTTAN		 Dap-seq
OMalley et al.(2016)
MYB33_col_a 		0.798 0.839
ATMYB65
M01076_2.00 		Arabidopsis thaliana
HAACNRHHN
NDDYNGTTD		 PBM
Sullivan et al.(2014)
pTH7084 		0.775 0.806
ATMYB65
M07076_2.00 		Arabidopsis thaliana
DHHNTAACBGHMW
WKDCVGTTANDDH		 Dap-seq
OMalley et al.(2016)
MYB65_col200_a 		0.775 0.806
ATMYB65
M07077_2.00 		Arabidopsis thaliana
NTAACYGHMWHNDHN
NDHNDWKDCRGTTAN		 Dap-seq
OMalley et al.(2016)
MYB65_colamp_a 		0.775 0.806
AtMYB81
M07049_2.00 		Arabidopsis thaliana
VTAACNGHWWH
DWWDCNGTTAB		 Dap-seq
OMalley et al.(2016)
MYB81_col_a 		0.671 0.763
AtMYB81
M07050_2.00 		Arabidopsis thaliana
DHHNYAACBGHWWH
DWWDCVGTTRNDDH		 Dap-seq
OMalley et al.(2016)
MYB81_colamp_a 		0.671 0.763
MYB24
M02311_2.00 		Arabidopsis thaliana
RCCDAMYNN
NNRKTHGGY		 PBM
Weirauch et al.(2014)
pTH8662 		0.661 0.645
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
gw1.66.160.1 Myb 6 53
gw1.66.160.1 Myb 59 104

Links

Other Myb/SANT family TFs
Other Physcomitrella patens TFs

276 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
TCP8 Arabidopsis thaliana AT1G58100 D
Bo9g052090 Brassica oleracea Bo9g052090 N
BRADI4G35670 Brachypodium distachyon BRADI4G35670 N
GLYMA16G05840 Glycine max GLYMA16G05840 N
GSMUA_Achr6G17840_001 Musa acuminata GSMUA_Achr6G17840_001 N
ORUFI02G26600 Oryza rufipogon ORUFI02G26600 N
PGSC0003DMG400024928 Solanum tuberosum PGSC0003DMG400024928 N
Sb08g004610 Sorghum bicolor Sb08g004610 N
SELMODRAFT_429489 Selaginella moellendorffii SELMODRAFT_429489 N
SELMODRAFT_441321 Selaginella moellendorffii SELMODRAFT_441321 N
Traes_5BL_B94C45A8F Triticum aestivum Traes_5BL_B94C45A8F N
Cla007052 Citrullus lanatus Cla007052 N
Carubv10010909m.g Capsella rubella Carubv10010909m.g N
evm.TU.supercontig_66.26 Carica papaya evm.TU.supercontig_66.26 N
Pavir.Fa00111 Panicum virgatum Pavir.Fa00111 N