Cagra.0551s0003 (Capsella grandiflora)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00249 (Myb_DNA-binding) IPR014778 Cagra.0551s0003 T285972_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
MYBP_MAIZE
M11057_2.00 		Zea mays
ACCWACCHN
NDGGTWGGT		 Transfac
Matys et al.(2006)
P$P_01 		0.681 0.794
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Cagra.0551s0003.1.p Myb 14 61
Cagra.0551s0003.1.p Myb 67 87

Links

Other Myb/SANT family TFs
Other Capsella grandiflora TFs

21 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
APRR2 Arabidopsis thaliana AT4G18020 D
Eucgr.E00308 Eucalyptus grandis Eucgr.E00308 I
APRR2 Vitis vinifera VIT_02s0012g00570 I
Ciclev10031120m.g Citrus clementina Ciclev10031120m.g I
Cagra.1595s0002 Capsella grandiflora Cagra.1595s0002 I
Bostr.30275s0270 Boechera stricta Bostr.30275s0270 I
Aquca_044_00072 Aquilegia coerulea Aquca_044_00072 I
Cucsa.321580 Cucumis sativus Cucsa.321580 I
Cucsa.313480 Cucumis sativus Cucsa.313480 I
cassava42048.valid.m1 Manihot esculenta cassava42048.valid.m1 I
cassava42047.valid.m1 Manihot esculenta cassava42047.valid.m1 I
cassava2466.valid.m1 Manihot esculenta cassava2466.valid.m1 I
30054.m000786 Ricinus communis 30054.m000786 I
Pm014733 Prunus mume Pm014733 I
Cla016403 Citrullus lanatus Cla016403 I
Cla008926 Citrullus lanatus Cla008926 I
Ca_24009 Cicer arietinum Ca_24009 I
Ca_12825 Cicer arietinum Ca_12825 I
Ca_02285 Cicer arietinum Ca_02285 I
PDK_20s1585631g001 Phoenix dactylifera PDK_20s1585631g001 I
MDP0000248863 Malus domestica MDP0000248863 I
AMTR_s00149p00035260 Amborella trichopoda AMTR_s00149p00035260 I
chr4.CM0831.100.nd Lotus japonicus chr4.CM0831.100.nd I
chr2.CM0021.770.nc Lotus japonicus chr2.CM0021.770.nc I
PK19826.1 Cannabis sativa PK19826.1 I
Thhalv10024919m.g Eutrema salsugineum Thhalv10024919m.g I
SapurV1A.1296s0050 Salix purpurea SapurV1A.1296s0050 I
SapurV1A.0132s0010 Salix purpurea SapurV1A.0132s0010 I
orange1.1g008254m.g Citrus sinensis orange1.1g008254m.g I
evm.TU.supercontig_6.428 Carica papaya evm.TU.supercontig_6.428 I
MDP0000237396 Malus domestica MDP0000237396 I
Lus10040109.g Linum usitatissimum Lus10040109.g I
Lus10011044.g Linum usitatissimum Lus10011044.g I
Lus10003013.g Linum usitatissimum Lus10003013.g I
Gorai.008G228800 Gossypium raimondii Gorai.008G228800 I
Gorai.004G188300 Gossypium raimondii Gorai.004G188300 I
Gorai.003G180100 Gossypium raimondii Gorai.003G180100 I
gene10484-v1.0-hybrid Fragaria vesca gene10484-v1.0-hybrid I
APRR2 Arabidopsis lyrata fgenesh2_kg.7__2503__AT4G18020.2 I
GSMUA_Achr2G18200_001 Musa acuminata GSMUA_Achr2G18200_001 I
GSMUA_Achr2G15250_001 Musa acuminata GSMUA_Achr2G15250_001 I
GSMUA_Achr11G17740_001 Musa acuminata GSMUA_Achr11G17740_001 I
GSMUA_Achr10G26160_001 Musa acuminata GSMUA_Achr10G26160_001 I
GLYMA17G16360 Glycine max GLYMA17G16360 I
GLYMA11G04441 Glycine max GLYMA11G04441 I
GLYMA05G06070 Glycine max GLYMA05G06070 I
GLYMA01G40900 Glycine max GLYMA01G40900 I
GSMUA_Achr7G11040_001 Musa acuminata GSMUA_Achr7G11040_001 I
BRADI2G08287 Brachypodium distachyon BRADI2G08287 I
Bra036015 Brassica rapa Bra036015 I
Bra013279 Brassica rapa Bra013279 I
Bra013278 Brassica rapa Bra013278 I
Bra013277 Brassica rapa Bra013277 I
Bra012623 Brassica rapa Bra012623 I
Bo7g105690 Brassica oleracea Bo7g105690 I
Bo1g019180 Brassica oleracea Bo1g019180 I
GLK2 Oryza sativa OS01G0239000 I
Solyc08g077230.2 Solanum lycopersicum Solyc08g077230.2 I
Solyc06g061030.2 Solanum lycopersicum Solyc06g061030.2 I
SELMODRAFT_428906 Selaginella moellendorffii SELMODRAFT_428906 I
PRUPE_ppa004161mg Prunus persica PRUPE_ppa004161mg I
POPTR_0003s08600 Populus trichocarpa POPTR_0003s08600 I
POPTR_0001s02910 Populus trichocarpa POPTR_0001s02910 I
PGSC0003DMG400026587 Solanum tuberosum PGSC0003DMG400026587 I
PGSC0003DMG400024217 Solanum tuberosum PGSC0003DMG400024217 I
TCM_015780 Theobroma cacao TCM_015780 I
ORUFI01G09620 Oryza rufipogon ORUFI01G09620 I
OPUNC01G08680 Oryza punctata OPUNC01G08680 I
ONIVA01G11450 Oryza nivara ONIVA01G11450 I
OMERI01G08840 Oryza meridionalis OMERI01G08840 I
OGLUM01G10130 Oryza glumaepatula OGLUM01G10130 I
MTR_5g014040 Medicago truncatula MTR_5g014040 I
MTR_4g098870 Medicago truncatula MTR_4g098870 I
LPERR01G08320 Leersia perrieri LPERR01G08320 I