cassava42047.valid.m1 (Manihot esculenta)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00249 (Myb_DNA-binding) IPR014778 cassava42047.valid.m1 T284272_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
APRR2
M02300_2.00 		Arabidopsis thaliana
NNRNWATCNN
NNGATWNYNN		 PBM
Weirauch et al.(2014)
pTH7102 		0.775 0.894
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
cassava42047.valid.m1 Myb 314 364

Links

Other Myb/SANT family TFs
Other Manihot esculenta TFs

64 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
cassava42048.valid.m1 Manihot esculenta cassava42048.valid.m1 I 0.909
Ca_12825 Cicer arietinum Ca_12825 I 0.891
Solyc08g077230.2 Solanum lycopersicum Solyc08g077230.2 I 0.891
chr4.CM0831.100.nd Lotus japonicus chr4.CM0831.100.nd I 0.891
PGSC0003DMG400024217 Solanum tuberosum PGSC0003DMG400024217 I 0.891
MTR_4g098870 Medicago truncatula MTR_4g098870 I 0.884
GLYMA11G04441 Glycine max GLYMA11G04441 I 0.883
Gorai.008G228800 Gossypium raimondii Gorai.008G228800 I 0.883
Ca_02285 Cicer arietinum Ca_02285 I 0.883
chr2.CM0021.770.nc Lotus japonicus chr2.CM0021.770.nc I 0.883
GLYMA01G40900 Glycine max GLYMA01G40900 I 0.883
GLYMA17G16360 Glycine max GLYMA17G16360 I 0.871
Carubv10004540m.g Capsella rubella Carubv10004540m.g I 0.864
Cagra.1595s0002 Capsella grandiflora Cagra.1595s0002 I 0.864
MTR_5g014040 Medicago truncatula MTR_5g014040 I 0.849
Gorai.004G188300 Gossypium raimondii Gorai.004G188300 I 0.849
Gorai.003G180100 Gossypium raimondii Gorai.003G180100 I 0.843
GLYMA05G06070 Glycine max GLYMA05G06070 I 0.834
AMTR_s00149p00035260 Amborella trichopoda AMTR_s00149p00035260 I 0.816
Ca_24009 Cicer arietinum Ca_24009 I 0.816
Cla016403 Citrullus lanatus Cla016403 I 0.809
Eucgr.E00308 Eucalyptus grandis Eucgr.E00308 I 0.802
GSMUA_Achr11G17740_001 Musa acuminata GSMUA_Achr11G17740_001 I 0.801
MDP0000237396 Malus domestica MDP0000237396 I 0.796
Cucsa.313480 Cucumis sativus Cucsa.313480 I 0.795
PGSC0003DMG400026587 Solanum tuberosum PGSC0003DMG400026587 I 0.795
Solyc06g061030.2 Solanum lycopersicum Solyc06g061030.2 I 0.795
PK19826.1 Cannabis sativa PK19826.1 I 0.794
Pm014733 Prunus mume Pm014733 I 0.794
gene10484-v1.0-hybrid Fragaria vesca gene10484-v1.0-hybrid I 0.794
PRUPE_ppa004161mg Prunus persica PRUPE_ppa004161mg I 0.794
Ciclev10031120m.g Citrus clementina Ciclev10031120m.g I 0.794
orange1.1g008254m.g Citrus sinensis orange1.1g008254m.g I 0.794
30054.m000786 Ricinus communis 30054.m000786 I 0.787
cassava2466.valid.m1 Manihot esculenta cassava2466.valid.m1 I 0.777
APRR2 Arabidopsis lyrata fgenesh2_kg.7__2503__AT4G18020.2 I 0.775
APRR2 Arabidopsis thaliana AT4G18020 D 0.775
GSMUA_Achr2G18200_001 Musa acuminata GSMUA_Achr2G18200_001 I 0.763
Cucsa.321580 Cucumis sativus Cucsa.321580 I 0.760
Cla008926 Citrullus lanatus Cla008926 I 0.760
Aquca_044_00072 Aquilegia coerulea Aquca_044_00072 I 0.753
Bo1g019180 Brassica oleracea Bo1g019180 I 0.752
Thhalv10024919m.g Eutrema salsugineum Thhalv10024919m.g I 0.752
Bra012623 Brassica rapa Bra012623 I 0.752
Bo7g105690 Brassica oleracea Bo7g105690 I 0.752
Bra013277 Brassica rapa Bra013277 I 0.752
Bostr.30275s0270 Boechera stricta Bostr.30275s0270 I 0.752
Bra013278 Brassica rapa Bra013278 I 0.752
Bra013279 Brassica rapa Bra013279 I 0.752
MDP0000248863 Malus domestica MDP0000248863 I 0.746
TCM_015780 Theobroma cacao TCM_015780 I 0.745
Lus10011044.g Linum usitatissimum Lus10011044.g I 0.741
APRR2 Vitis vinifera VIT_02s0012g00570 I 0.741
evm.TU.supercontig_6.428 Carica papaya evm.TU.supercontig_6.428 I 0.734
SapurV1A.0132s0010 Salix purpurea SapurV1A.0132s0010 I 0.734
POPTR_0001s02910 Populus trichocarpa POPTR_0001s02910 I 0.734
PDK_20s1585631g001 Phoenix dactylifera PDK_20s1585631g001 I 0.727
SapurV1A.1296s0050 Salix purpurea SapurV1A.1296s0050 I 0.722
Lus10040109.g Linum usitatissimum Lus10040109.g I 0.721
SELMODRAFT_428906 Selaginella moellendorffii SELMODRAFT_428906 I 0.704
Lus10003013.g Linum usitatissimum Lus10003013.g I 0.688
POPTR_0003s08600 Populus trichocarpa POPTR_0003s08600 I 0.680
GSMUA_Achr2G15250_001 Musa acuminata GSMUA_Achr2G15250_001 I 0.669
Bra036015 Brassica rapa Bra036015 I 0.669