Carubv10003695m.g (Capsella rubella)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00249 (Myb_DNA-binding) IPR014778 Carubv10003695m.g T286241_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
Carubv10003695m Myb 113 159
Carubv10003695m Myb 165 210

Links

Other Myb/SANT family TFs
Other Capsella rubella TFs

83 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
30147.m013937 Ricinus communis 30147.m013937 I 0.679
PGSC0003DMG400018092 Solanum tuberosum PGSC0003DMG400018092 I 0.672
POPTR_0005s12050 Populus trichocarpa POPTR_0005s12050 I 0.665
PRUPE_ppa018123mg Prunus persica PRUPE_ppa018123mg I 0.699
Sb01g005100 Sorghum bicolor Sb01g005100 I 0.687
Si039046m.g Setaria italica Si039046m.g I 0.662
Solyc03g112890.1 Solanum lycopersicum Solyc03g112890.1 I 0.672
TCM_012087 Theobroma cacao TCM_012087 I 0.682
Traes_1BL_4D9406708 Triticum aestivum Traes_1BL_4D9406708 I 0.670
Traes_1DL_918A8F357 Triticum aestivum Traes_1DL_918A8F357 I 0.669
Traes_7AS_A337F362A Triticum aestivum Traes_7AS_A337F362A I 0.682
Traes_7BS_D28CCE3B8 Triticum aestivum Traes_7BS_D28CCE3B8 I 0.682
TRIUR3_12421 Triticum urartu TRIUR3_12421 I 0.682
Cla019490 Citrullus lanatus Cla019490 I 0.688
Pm000541 Prunus mume Pm000541 I 0.699
BGIOSGA022369 Oryza indica BGIOSGA022369 I 0.682
cassava33974.m1 Manihot esculenta cassava33974.m1 I 0.679
Cucsa.196850 Cucumis sativus Cucsa.196850 I 0.691
Cagra.0891s0081 Capsella grandiflora Cagra.0891s0081 I 0.795
Carubv10028458m.g Capsella rubella Carubv10028458m.g I 0.795
gene08006-v1.0-hybrid Fragaria vesca gene08006-v1.0-hybrid I 0.699
Gorai.008G295800 Gossypium raimondii Gorai.008G295800 I 0.682
MDP0000319656 Malus domestica MDP0000319656 I 0.696
Pavir.J02497 Panicum virgatum Pavir.J02497 I 0.704
Pavir.J02718 Panicum virgatum Pavir.J02718 I 0.704
Pavir.J25000 Panicum virgatum Pavir.J25000 I 0.680
Pavir.J37434 Panicum virgatum Pavir.J37434 I 0.667
SapurV1A.0396s0170 Salix purpurea SapurV1A.0396s0170 I 0.669
Thhalv10016057m.g Eutrema salsugineum Thhalv10016057m.g I 0.845
OGLUM06G04280 Oryza glumaepatula OGLUM06G04280 I 0.682
GRMZM5G870592 Zea mays GRMZM5G870592 I 0.681
fgenesh2_kg.277__1__AT5G58850.1 Arabidopsis lyrata fgenesh2_kg.277__1__AT5G58850.1 I 0.795
F775_22212 Aegilops tauschii F775_22212 I 0.682
Bra020346 Brassica rapa Bra020346 I 0.816
Bra006744 Brassica rapa Bra006744 I 0.808
Bo3g018490 Brassica oleracea Bo3g018490 I 0.808
LPERR06G03780 Leersia perrieri LPERR06G03780 I 0.682
Bo2g028290 Brassica oleracea Bo2g028290 I 0.821
OS06G0162700 Oryza sativa OS06G0162700 I 0.682
OB06G13860 Oryza brachyantha OB06G13860 I 0.682
OBART06G04170 Oryza barthii OBART06G04170 I 0.682
OLONG_010000 Oryza longistaminata OLONG_010000 I 0.682
OMERI06G04840 Oryza meridionalis OMERI06G04840 I 0.682
ONIVA06G05390 Oryza nivara ONIVA06G05390 I 0.682
OPUNC06G03990 Oryza punctata OPUNC06G03990 I 0.682
ORGLA06G0038500 Oryza glaberrima ORGLA06G0038500 I 0.682
fgenesh2_kg.3__2684__AT5G58850.1 Arabidopsis lyrata fgenesh2_kg.3__2684__AT5G58850.1 I 0.795
ORUFI06G04170 Oryza rufipogon ORUFI06G04170 I 0.682
SapurV1A.0772s0150 Salix purpurea SapurV1A.0772s0150 N 0.703
Lus10018220.g Linum usitatissimum Lus10018220.g N 0.688
Gorai.011G044100 Gossypium raimondii Gorai.011G044100 N 0.696
Lus10040684.g Linum usitatissimum Lus10040684.g N 0.688
Gorai.001G115300 Gossypium raimondii Gorai.001G115300 N 0.696
MYB64 Arabidopsis lyrata fgenesh2_kg.6__1071__AT5G11050.1 N 0.827
orange1.1g046581m.g Citrus sinensis orange1.1g046581m.g N 0.749
Bostr.20821s0001 Boechera stricta Bostr.20821s0001 N 0.779
Thhalv10015404m.g Eutrema salsugineum Thhalv10015404m.g N 0.801
MYB64 Arabidopsis thaliana AT5G11050 N 0.836
Thhalv10027294m.g Eutrema salsugineum Thhalv10027294m.g N 0.801
chr4.CM0042.120.nd Lotus japonicus chr4.CM0042.120.nd N 0.672
LjSGA_147332.1 Lotus japonicus LjSGA_147332.1 N 0.669
PDK_20s1782461g001 Phoenix dactylifera PDK_20s1782461g001 N 0.676
GSMUA_Achr10G00770_001 Musa acuminata GSMUA_Achr10G00770_001 N 0.666
PGSC0003DMG400044141 Solanum tuberosum PGSC0003DMG400044141 N 0.676
POPTR_0001s25710 Populus trichocarpa POPTR_0001s25710 N 0.717
POPTR_0009s04870 Populus trichocarpa POPTR_0009s04870 N 0.694
Solyc06g076840.1 Solanum lycopersicum Solyc06g076840.1 N 0.676
TCM_041651 Theobroma cacao TCM_041651 N 0.723
MTR_5g070020 Medicago truncatula MTR_5g070020 N 0.696
MTR_3g463400 Medicago truncatula MTR_3g463400 N 0.694
Cla008304 Citrullus lanatus Cla008304 N 0.736
GSMUA_Achr6G33700_001 Musa acuminata GSMUA_Achr6G33700_001 N 0.662
29681.m001315 Ricinus communis 29681.m001315 N 0.717
evm.TU.supercontig_112.44 Carica papaya evm.TU.supercontig_112.44 N 0.728
cassava26507.m1 Manihot esculenta cassava26507.m1 N 0.728
cassava26674.m1 Manihot esculenta cassava26674.m1 N 0.717
Cucsa.146980 Cucumis sativus Cucsa.146980 N 0.733
GLYMA18G07360 Glycine max GLYMA18G07360 N 0.677
Bostr.23997s0007 Boechera stricta Bostr.23997s0007 N 0.832
GLYMA14G37140 Glycine max GLYMA14G37140 N 0.706
Cagra.1398s0045 Capsella grandiflora Cagra.1398s0045 N 0.909
GLYMA02G39070 Glycine max GLYMA02G39070 N 0.736
Ciclev10030254m.g Citrus clementina Ciclev10030254m.g N 0.749