Carubv10026903m.g (Capsella rubella)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00249 (Myb_DNA-binding) IPR014778 Carubv10026903m.g T286457_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AT5G58900
M07146_2.00 		Arabidopsis thaliana
HHWWYCTTATCYWHW
WDWRGATAAGRWWDD		 Dap-seq
OMalley et al.(2016)
At5g58900_col_a 		0.898 0.979
AT5G58900
M07147_2.00 		Arabidopsis thaliana
HWYMTTATCHWNWWH
DWWNWDGATAAKRWD		 Dap-seq
OMalley et al.(2016)
At5g58900_colamp_a 		0.898 0.979
PK27213.1
M01284_2.00 		Cannabis sativa
NHWATCNNNN
NNNNGATWDN		 PBM
Lambert et al.(2019)
pTH10196 		0.756 0.840
PK27213.1
M02356_2.00 		Cannabis sativa
NHHATCNNNN
NNNNGATDDN		 PBM
Weirauch et al.(2014)
pTH9600 		0.756 0.840
AT5G05790
M07119_2.00 		Arabidopsis thaliana
HWYMTTATCHWNWHH
DDWNWDGATAAKRWD		 Dap-seq
OMalley et al.(2016)
At5g05790_col_a 		0.687 0.766
AT2G38090
M07055_2.00 		Arabidopsis thaliana
HHBAWNYTTATCYWNWHYNBN
NVNRDWNWRGATAARNWTVDD		 Dap-seq
OMalley et al.(2016)
At2g38090_col_a 		0.672 0.809
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Carubv10026903m Myb 140 187

Links

Other Myb/SANT family TFs
Other Capsella rubella TFs

91 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Mecom Mus musculus ENSMUSG00000027684 D
MECOM Homo sapiens ENSG00000085276 D
Brh_R009954 Buceros rhinoceros Brh_R009954 I
ENSPANG00000001637 Papio anubis ENSPANG00000001637 I
ENSPFOG00000011975 Poecilia formosa ENSPFOG00000011975 I
ENSPPYG00000014277 Pongo abelii ENSPPYG00000014277 I
ENSPSIG00000004908 Pelodiscus sinensis ENSPSIG00000004908 I
MECOM Pan troglodytes ENSPTRG00000015601 I
Mecom Rattus norvegicus ENSRNOG00000012645 I
ENSSHAG00000017530 Sarcophilus harrisii ENSSHAG00000017530 I
ENSTGUG00000011015 Taeniopygia guttata ENSTGUG00000011015 I
MECOM Tursiops truncatus ENSTTRG00000002158 I
ENSXMAG00000010745 Xiphophorus maculatus ENSXMAG00000010745 I
Aan_R014069 Calypte anna Aan_R014069 I
Afo_R003945 Aptenodytes forsteri Afo_R003945 I
MECOM Oryctolagus cuniculus ENSOCUG00000010171 I
Cmyd_10009299 Chelonia mydas Cmyd_10009299 I
ENSMMUP00000002995 Macaca fascicularis ENSMMUP00000002995 I
ENSP00000417899-D1 Bos grunniens ENSP00000417899-D1 I
Gfo_R004540 Geospiza fortis Gfo_R004540 I
Myotis_brandtii_MECOM_10024770 Myotis brandtii Myotis_brandtii_MECOM_10024770 I
Pvit_19180 Pogona vitticeps Pvit_19180 I
Tal_R005471 Tyto alba Tal_R005471 I
B7ZRM8 Xenopus laevis B7ZRM8 I
B7ZRU9 Xenopus laevis B7ZRU9 I
mecom.S Xenopus laevis XB-GENE-6448217 I
mecom.L Xenopus laevis XB-GENE-980198 I
ENSLACG00000017233 Latimeria chalumnae ENSLACG00000017233 I
ENSAMEG00000002052 Ailuropoda melanoleuca ENSAMEG00000002052 I
ENSAPLG00000012134 Anas platyrhynchos ENSAPLG00000012134 I
MECOM Bos taurus ENSBTAG00000005871 I
MECOM Canis familiaris ENSCAFG00000014621 I
MECOM Callithrix jacchus ENSCJAG00000002651 I
MECOM Cavia porcellus ENSCPOG00000013572 I
ENSCSAG00000012539 Chlorocebus sabaeus ENSCSAG00000012539 I
MECOM Dasypus novemcinctus ENSDNOG00000007746 I
MECOM Equus caballus ENSECAG00000020788 I
ENSFALG00000008636 Ficedula albicollis ENSFALG00000008636 I
ENSGALG00000009437 Gallus gallus ENSGALG00000009437 I
MECOM Gorilla gorilla ENSGGOG00000013086 I
MECOM Otolemur garnettii ENSOGAG00000012812 I
MECOM Loxodonta africana ENSLAFG00000011479 I
ENSLOCG00000009557 Lepisosteus oculatus ENSLOCG00000009557 I
MECOM Meleagris gallopavo ENSMGAG00000010302 I
MECOM Myotis lucifugus ENSMLUG00000015749 I
MECOM Macaca mulatta ENSMMUG00000002242 I
MECOM Monodelphis domestica ENSMODG00000016133 I
ENSMPUG00000017083 Mustela putorius furo ENSMPUG00000017083 I
ENSNLEG00000004964 Nomascus leucogenys ENSNLEG00000004964 I
MECOM Ornithorhynchus anatinus ENSOANG00000007585 I
ENSOARG00000000899 Ovis aries ENSOARG00000000899 I
MECOM Anolis carolinensis ENSACAG00000015620 I