Gorai.001G075000 (Gossypium raimondii)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00249 (Myb_DNA-binding) IPR014778 Gorai.001G075000 T287454_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
MYB62
M07027_2.00 		Arabidopsis thaliana
NHRCCTAAYTWNHNN
NNDNWARTTAGGYDN		 Dap-seq
OMalley et al.(2016)
MYB62_col_a 		0.748 0.796
MYB62
M07028_2.00 		Arabidopsis thaliana
HNKRCCTAACTHH
DDAGTTAGGYMND		 Dap-seq
OMalley et al.(2016)
MYB62_colamp_a 		0.748 0.796
MYB116
M07014_2.00 		Arabidopsis thaliana
NRCCTAAYTWNWNNN
NNNWNWARTTAGGYN		 Dap-seq
OMalley et al.(2016)
MYB116_col_a 		0.711 0.774
MYB116
M07015_2.00 		Arabidopsis thaliana
HNTRCCTAACTHH
DDAGTTAGGYAND		 Dap-seq
OMalley et al.(2016)
MYB116_colamp_a 		0.711 0.774
MYB05_ANTMA
M11067_2.00 		Antirrhinum majus Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MYB305_Q3 		0.694 0.742
MYB108
M07065_2.00 		Arabidopsis thaliana
RCCWAAYYNNNNHNH
DNDNNNNRRTTWGGY		 Dap-seq
OMalley et al.(2016)
BOS1_col_a 		0.684 0.742
MYB24
M02311_2.00 		Arabidopsis thaliana
RCCDAMYNN
NNRKTHGGY		 PBM
Weirauch et al.(2014)
pTH8662 		0.668 0.720
MYB57
M01072_2.00 		Arabidopsis thaliana
RCCTAAYT
ARTTAGGY		 PBM
Sullivan et al.(2014)
pTH9748 		0.667 0.688
MYB57
M07059_2.00 		Arabidopsis thaliana
YNTACCTAACTHHH
DDDAGTTAGGTANR		 Dap-seq
OMalley et al.(2016)
MYB57_col_a 		0.667 0.688
MYB57
M07060_2.00 		Arabidopsis thaliana
ACCTAAY
RTTAGGT		 Dap-seq
OMalley et al.(2016)
MYB57_colamp_a 		0.667 0.688
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Gorai.001G075000.1 Myb 17 64
Gorai.001G075000.1 Myb 70 115
Gorai.001G075000.2 Myb 17 64
Gorai.001G075000.2 Myb 70 115

Links

Other Myb/SANT family TFs
Other Gossypium raimondii TFs

407 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
OB11G11380 Oryza brachyantha OB11G11380 I
Eucgr.J00316 Eucalyptus grandis Eucgr.J00316 I
GRMZM2G174834 Zea mays GRMZM2G174834 I
GRMZM2G124524 Zea mays GRMZM2G124524 I
GLYMA08G23630 Glycine max GLYMA08G23630 I
ORGLA11G0014900 Oryza glaberrima ORGLA11G0014900 I
Traes_5DL_2CF55DD05 Triticum aestivum Traes_5DL_2CF55DD05 I
BRADI4G43877 Brachypodium distachyon BRADI4G43877 I
OS12G0126300 Oryza sativa OS12G0126300 I
Traes_5AL_F8DEBE8E7 Triticum aestivum Traes_5AL_F8DEBE8E7 I
Solyc01g096860.1 Solanum lycopersicum Solyc01g096860.1 I
OB12G11690 Oryza brachyantha OB12G11690 I
Sb05g001790 Sorghum bicolor Sb05g001790 I
e_gw1.261.8.1 Physcomitrella patens e_gw1.261.8.1 N
cassava16315.m1 Manihot esculenta cassava16315.m1 N
cassava11368.m1 Manihot esculenta cassava11368.m1 N
mg013664m Mimulus guttatus mg013664m N
30069.m000440 Ricinus communis 30069.m000440 N
Pm017032 Prunus mume Pm017032 N
Pm013856 Prunus mume Pm013856 N
Cla020765 Citrullus lanatus Cla020765 N
Ca_20689 Cicer arietinum Ca_20689 N
Ca_17532 Cicer arietinum Ca_17532 N
VIT_01s0026g01690 Vitis vinifera VIT_01s0026g01690 N
TRIUR3_24036 Triticum urartu TRIUR3_24036 N
Si026433m.g Setaria italica Si026433m.g N
Si012026m.g Setaria italica Si012026m.g N
gene15913-v1.0-hybrid Fragaria vesca gene15913-v1.0-hybrid N
chr2.CM0608.630.nc Lotus japonicus chr2.CM0608.630.nc N
Thhalv10010394m.g Eutrema salsugineum Thhalv10010394m.g N
SapurV1A.0036s0830 Salix purpurea SapurV1A.0036s0830 N
orange1.1g036423m.g Citrus sinensis orange1.1g036423m.g N
MDP0000231748 Malus domestica MDP0000231748 N
Lus10028880.g Linum usitatissimum Lus10028880.g N
Lus10008939.g Linum usitatissimum Lus10008939.g N
Gorai.006G025100 Gossypium raimondii Gorai.006G025100 N
Gorai.001G256900 Gossypium raimondii Gorai.001G256900 N
e_gw1.32.189.1 Physcomitrella patens e_gw1.32.189.1 N
gene00377-v1.0-hybrid Fragaria vesca gene00377-v1.0-hybrid N
evm.TU.supercontig_54.28 Carica papaya evm.TU.supercontig_54.28 N
evm.TU.supercontig_14.38 Carica papaya evm.TU.supercontig_14.38 N
Ciclev10003896m.g Citrus clementina Ciclev10003896m.g N
Bostr.7128s0222 Boechera stricta Bostr.7128s0222 N
mgf019814m Mimulus guttatus mgf019814m N
mgf019116m Mimulus guttatus mgf019116m N
PGSC0003DMG400027502 Solanum tuberosum PGSC0003DMG400027502 N
WRI1 Arabidopsis lyrata fgenesh2_kg.5__1822__AT3G54320.1 N
MTR_8g468920 Medicago truncatula MTR_8g468920 N
MTR_8g044070 Medicago truncatula MTR_8g044070 N
MTR_8g044040 Medicago truncatula MTR_8g044040 N
MTR_4g007770 Medicago truncatula MTR_4g007770 N
LPERR12G01610 Leersia perrieri LPERR12G01610 N
LPERR01G30020 Leersia perrieri LPERR01G30020 N
GRMZM2G451031 Zea mays GRMZM2G451031 N
GLYMA15G34770 Glycine max GLYMA15G34770 N
GLYMA08G24420 Glycine max GLYMA08G24420 N
OB01G43640 Oryza brachyantha OB01G43640 N
ADAP Arabidopsis lyrata fgenesh2_kg.1__1760__AT1G16060.1 N
F775_06373 Aegilops tauschii F775_06373 N
BRADI3G36820 Brachypodium distachyon BRADI3G36820 N
BRADI2G53070 Brachypodium distachyon BRADI2G53070 N
Bra007066 Brassica rapa Bra007066 N
Bra003178 Brassica rapa Bra003178 N
BGIOSGA036704 Oryza indica BGIOSGA036704 N
BGIOSGA034580 Oryza indica BGIOSGA034580 N
OPUNC11G01540 Oryza punctata OPUNC11G01540 N
Sb03g037750 Sorghum bicolor Sb03g037750 N
PRUPE_ppa007768mg Prunus persica PRUPE_ppa007768mg N
POPTR_0010s25340 Populus trichocarpa POPTR_0010s25340 N
BGIOSGA004677 Oryza indica BGIOSGA004677 N
ORUFI01G38130 Oryza rufipogon ORUFI01G38130 N
ORGLA12G0015400 Oryza glaberrima ORGLA12G0015400 N
ORGLA01G0286200 Oryza glaberrima ORGLA01G0286200 N
OPUNC12G01560 Oryza punctata OPUNC12G01560 N
SELMODRAFT_85823 Selaginella moellendorffii SELMODRAFT_85823 N
ONIVA11G01800 Oryza nivara ONIVA11G01800 N
ONIVA03G39530 Oryza nivara ONIVA03G39530 N
ONIVA01G39780 Oryza nivara ONIVA01G39780 N
OMERI12G00060 Oryza meridionalis OMERI12G00060 N
OMERI11G02080 Oryza meridionalis OMERI11G02080 N
OLONG_002029 Oryza longistaminata OLONG_002029 N
OBART12G01740 Oryza barthii OBART12G01740 N
OBART01G34800 Oryza barthii OBART01G34800 N