Gorai.009G098300 (Gossypium raimondii)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00249 (Myb_DNA-binding) IPR014778 Gorai.009G098300 T287709_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
PK21687.1
M01282_2.00 		Cannabis sativa
HWAAACCYH
DRGGTTTWD		 PBM
Lambert et al.(2019)
pTH11299 		0.854 0.936
TRP2
M07092_2.00 		Arabidopsis thaliana
AAACCCTAAACCCTAAACCC
GGGTTTAGGGTTTAGGGTTT		 Dap-seq
OMalley et al.(2016)
TRP2_col_a 		0.846 0.915
TRP2
M07093_2.00 		Arabidopsis thaliana
AAACCCTAAACCCTAAACCCT
AGGGTTTAGGGTTTAGGGTTT		 Dap-seq
OMalley et al.(2016)
TRP2_colamp_a 		0.846 0.915
TRP1
M07148_2.00 		Arabidopsis thaliana
AAACCCTAAACCCTAAACCCTAA
TTAGGGTTTAGGGTTTAGGGTTT		 Dap-seq
OMalley et al.(2016)
TRP1_col 		0.836 0.915
TRP5
M01266_2.00 		Arabidopsis thaliana
NHWAAACCYH
DRGGTTTWDN		 PBM
Lambert et al.(2019)
pTH9963 		0.794 0.915
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Gorai.009G098300.1 Myb 583 633
Gorai.009G098300.2 Myb 581 631
Gorai.009G098300.3 Myb 583 633
Gorai.009G098300.4 Myb 583 613
Gorai.009G098300.5 Myb 583 633

Links

Other Myb/SANT family TFs
Other Gossypium raimondii TFs

205 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
TRP5 Arabidopsis thaliana AT1G07540 D 0.794
TRP2 Arabidopsis thaliana AT3G46590 D 0.846
TRP1 Arabidopsis thaliana AT5G59430 D 0.836
PK21687.1 Cannabis sativa PK21687.1 D 0.854
TRFL2 Arabidopsis lyrata Al_scaffold_0001_698 I 0.794
TRFL4 Arabidopsis lyrata Al_scaffold_0005_2280 I 0.768
AMTR_s00009p00107000 Amborella trichopoda AMTR_s00009p00107000 I 0.836
AMTR_s00012p00239180 Amborella trichopoda AMTR_s00012p00239180 I 0.768
TRP3 Arabidopsis thaliana AT3G12560 I 0.794
TRFL4 Arabidopsis thaliana AT3G53790 I 0.768
TRP4 Arabidopsis thaliana AT5G13820 I 0.785
BGIOSGA005358 Oryza indica BGIOSGA005358 I 0.737
BGIOSGA012326 Oryza indica BGIOSGA012326 I 0.854
Bo01118s020 Brassica oleracea Bo01118s020 I 0.794
Bo1g139150 Brassica oleracea Bo1g139150 I 0.794
Bo2g011570 Brassica oleracea Bo2g011570 I 0.785
Bo3g009370 Brassica oleracea Bo3g009370 I 0.785
Bo5g008270 Brassica oleracea Bo5g008270 I 0.746
Bo5g133380 Brassica oleracea Bo5g133380 I 0.794
Bo9g139390 Brassica oleracea Bo9g139390 I 0.828
Bo9g166400 Brassica oleracea Bo9g166400 I 0.785
Bra002566 Brassica rapa Bra002566 I 0.828
Bra006218 Brassica rapa Bra006218 I 0.785
Bra008800 Brassica rapa Bra008800 I 0.785
Bra015585 Brassica rapa Bra015585 I 0.746
Bra023437 Brassica rapa Bra023437 I 0.785
Bra030689 Brassica rapa Bra030689 I 0.794
Bra034751 Brassica rapa Bra034751 I 0.794
Bra038729 Brassica rapa Bra038729 I 0.794
BRADI1G66677 Brachypodium distachyon BRADI1G66677 I 0.854
BRADI2G62170 Brachypodium distachyon BRADI2G62170 I 0.768
F775_10373 Aegilops tauschii F775_10373 I 0.768
F775_17181 Aegilops tauschii F775_17181 I 0.854
TRFL9 Arabidopsis lyrata fgenesh2_kg.3__1313__AT3G12560.1 I 0.794
TRFL1 Arabidopsis lyrata fgenesh2_kg.5__1021__AT3G46590.3 I 0.786
TBP1 Arabidopsis lyrata fgenesh2_kg.6__1339__AT5G13820.1 I 0.785
ATTRP1 Arabidopsis lyrata fgenesh2_kg.8__1886__AT5G59430.4 I 0.836
GLYMA07G15940 Glycine max GLYMA07G15940 I 0.846
GLYMA11G14760 Glycine max GLYMA11G14760 I 0.836
GLYMA11G34050 Glycine max GLYMA11G34050 I 0.794
GLYMA12G06680 Glycine max GLYMA12G06680 I 0.828
GLYMA13G41210 Glycine max GLYMA13G41210 I 0.875
GLYMA15G04200 Glycine max GLYMA15G04200 I 0.836
GLYMA18G04251 Glycine max GLYMA18G04251 I 0.794
GLYMA18G39911 Glycine max GLYMA18G39911 I 0.846
GRMZM2G063151 Zea mays GRMZM2G063151 I 0.854
GRMZM2G110309 Zea mays GRMZM2G110309 I 0.854
GRMZM2G133016 Zea mays GRMZM2G133016 I 0.768
GSMUA_Achr10G22620_001 Musa acuminata GSMUA_Achr10G22620_001 I 0.836
GSMUA_Achr7G15090_001 Musa acuminata GSMUA_Achr7G15090_001 I 0.794
GSMUA_Achr8G20810_001 Musa acuminata GSMUA_Achr8G20810_001 I 0.836
GSMUA_Achr9G03910_001 Musa acuminata GSMUA_Achr9G03910_001 I 0.854
LPERR02G30830 Leersia perrieri LPERR02G30830 I 0.737
LPERR03G10840 Leersia perrieri LPERR03G10840 I 0.854
MLOC_57410 Hordeum vulgare MLOC_57410 I 0.768
MLOC_59817 Hordeum vulgare MLOC_59817 I 0.854
MTR_2g097290 Medicago truncatula MTR_2g097290 I 0.776
MTR_3g067935 Medicago truncatula MTR_3g067935 I 0.794
MTR_5g080010 Medicago truncatula MTR_5g080010 I 0.785
MTR_7g061840 Medicago truncatula MTR_7g061840 I 0.846
OB02G44060 Oryza brachyantha OB02G44060 I 0.737
OB03G22340 Oryza brachyantha OB03G22340 I 0.854
OBART02G37370 Oryza barthii OBART02G37370 I 0.737
OBART03G12240 Oryza barthii OBART03G12240 I 0.854
OGLUM02G38510 Oryza glumaepatula OGLUM02G38510 I 0.737
OGLUM03G12230 Oryza glumaepatula OGLUM03G12230 I 0.854
OLONG_013725 Oryza longistaminata OLONG_013725 I 0.737
OLONG_025333 Oryza longistaminata OLONG_025333 I 0.854
OMERI01G33350 Oryza meridionalis OMERI01G33350 I 0.737
OMERI03G11490 Oryza meridionalis OMERI03G11490 I 0.854
ONIVA02G40130 Oryza nivara ONIVA02G40130 I 0.737
ONIVA11G13450 Oryza nivara ONIVA11G13450 I 0.854
OPUNC02G34540 Oryza punctata OPUNC02G34540 I 0.737
OPUNC03G11810 Oryza punctata OPUNC03G11810 I 0.854
ORGLA02G0325900 Oryza glaberrima ORGLA02G0325900 I 0.737
ORGLA03G0118300 Oryza glaberrima ORGLA03G0118300 I 0.854
ORUFI02G38880 Oryza rufipogon ORUFI02G38880 I 0.737
ORUFI03G12870 Oryza rufipogon ORUFI03G12870 I 0.854
OS03G0274300 Oryza sativa OS03G0274300 I 0.854
PGSC0003DMG400002138 Solanum tuberosum PGSC0003DMG400002138 I 0.846
PGSC0003DMG400006353 Solanum tuberosum PGSC0003DMG400006353 I 0.748
PGSC0003DMG400023432 Solanum tuberosum PGSC0003DMG400023432 I 0.807
PGSC0003DMG400030324 Solanum tuberosum PGSC0003DMG400030324 I 0.854
POPTR_0001s24840 Populus trichocarpa POPTR_0001s24840 I 0.854
POPTR_0006s08680 Populus trichocarpa POPTR_0006s08680 I 0.776
POPTR_0008s05740 Populus trichocarpa POPTR_0008s05740 I 0.785
POPTR_0009s03730 Populus trichocarpa POPTR_0009s03730 I 0.854
POPTR_0010s20990 Populus trichocarpa POPTR_0010s20990 I 0.767
PRUPE_ppa002374mg Prunus persica PRUPE_ppa002374mg I 0.794
PRUPE_ppa002403mg Prunus persica PRUPE_ppa002403mg I 0.854
PRUPE_ppa002522mg Prunus persica PRUPE_ppa002522mg I 0.854
Sb01g039650 Sorghum bicolor Sb01g039650 I 0.854
Sb06g019970 Sorghum bicolor Sb06g019970 I 0.768
SELMODRAFT_121021 Selaginella moellendorffii SELMODRAFT_121021 I 0.728
SELMODRAFT_123062 Selaginella moellendorffii SELMODRAFT_123062 I 0.728
SELMODRAFT_131544 Selaginella moellendorffii SELMODRAFT_131544 I 0.781
Si000591m.g Setaria italica Si000591m.g I 0.768
Si009551m.g Setaria italica Si009551m.g I 0.750
Si016548m.g Setaria italica Si016548m.g I 0.854
Si034524m.g Setaria italica Si034524m.g I 0.875
Solyc04g011650.2 Solanum lycopersicum Solyc04g011650.2 I 0.766
Solyc05g054410.2 Solanum lycopersicum Solyc05g054410.2 I 0.786
Solyc06g005590.2 Solanum lycopersicum Solyc06g005590.2 I 0.846
Solyc06g076270.2 Solanum lycopersicum Solyc06g076270.2 I 0.854
TCM_021921 Theobroma cacao TCM_021921 I 0.836
TCM_041816 Theobroma cacao TCM_041816 I 0.854
TCM_042704 Theobroma cacao TCM_042704 I 0.794
TRAES3BF045500220CFD_g Triticum aestivum TRAES3BF045500220CFD_g I 0.768
Traes_4AS_FA7E65184 Triticum aestivum Traes_4AS_FA7E65184 I 0.854
Traes_4BL_AB2636FB0 Triticum aestivum Traes_4BL_AB2636FB0 I 0.854
Traes_4DL_3849A9A5F Triticum aestivum Traes_4DL_3849A9A5F I 0.854
TRIUR3_18647 Triticum urartu TRIUR3_18647 I 0.854
VIT_06s0004g04940 Vitis vinifera VIT_06s0004g04940 I 0.854
TRFL4 Vitis vinifera VIT_08s0007g00500 I 0.776
VIT_13s0019g01670 Vitis vinifera VIT_13s0019g01670 I 0.794
Ca_02624 Cicer arietinum Ca_02624 I 0.794
Ca_13309 Cicer arietinum Ca_13309 I 0.794
Ca_16107 Cicer arietinum Ca_16107 I 0.785
Ca_21136 Cicer arietinum Ca_21136 I 0.846
Cla004068 Citrullus lanatus Cla004068 I 0.786
Cla008361 Citrullus lanatus Cla008361 I 0.854
Cla013524 Citrullus lanatus Cla013524 I 0.705
Pm000720 Prunus mume Pm000720 I 0.854
Pm002686 Prunus mume Pm002686 I 0.854
Pm018821 Prunus mume Pm018821 I 0.776
28880.m000016 Ricinus communis 28880.m000016 I 0.854
cassava19451.valid.m1 Manihot esculenta cassava19451.valid.m1 I 0.854
cassava19452.valid.m1 Manihot esculenta cassava19452.valid.m1 I 0.854
cassava19453.valid.m1 Manihot esculenta cassava19453.valid.m1 I 0.854
cassava30955.valid.m1 Manihot esculenta cassava30955.valid.m1 I 0.854
cassava31336.valid.m1 Manihot esculenta cassava31336.valid.m1 I 0.785
Cucsa.117790 Cucumis sativus Cucsa.117790 I 0.854
Cucsa.138770 Cucumis sativus Cucsa.138770 I 0.705
Cucsa.165230 Cucumis sativus Cucsa.165230 I 0.786
e_gw1.132.51.1 Physcomitrella patens e_gw1.132.51.1 I 0.854
gw1.98.100.1 Physcomitrella patens gw1.98.100.1 I 0.828
mgf005791m Mimulus guttatus mgf005791m I 0.854
mgf007893m Mimulus guttatus mgf007893m I 0.786
Aquca_003_00096 Aquilegia coerulea Aquca_003_00096 I 0.828
Aquca_009_00956 Aquilegia coerulea Aquca_009_00956 I 0.854
Bostr.18473s0300 Boechera stricta Bostr.18473s0300 I 0.768
Bostr.25219s0206 Boechera stricta Bostr.25219s0206 I 0.794
Bostr.26833s0301 Boechera stricta Bostr.26833s0301 I 0.854
Bostr.2902s0116 Boechera stricta Bostr.2902s0116 I 0.785
Bostr.3640s0028 Boechera stricta Bostr.3640s0028 I 0.794
Cagra.0448s0008 Capsella grandiflora Cagra.0448s0008 I 0.786
Cagra.1317s0071 Capsella grandiflora Cagra.1317s0071 I 0.854
Cagra.1671s0374 Capsella grandiflora Cagra.1671s0374 I 0.794
Cagra.5588s0009 Capsella grandiflora Cagra.5588s0009 I 0.765
Cagra.5641s0019 Capsella grandiflora Cagra.5641s0019 I 0.794
Carubv10000426m.g Capsella rubella Carubv10000426m.g I 0.765
Carubv10011259m.g Capsella rubella Carubv10011259m.g I 0.794
Carubv10013179m.g Capsella rubella Carubv10013179m.g I 0.794
Carubv10016934m.g Capsella rubella Carubv10016934m.g I 0.786
Carubv10018629m.g Capsella rubella Carubv10018629m.g I 0.739
Carubv10026172m.g Capsella rubella Carubv10026172m.g I 0.854
Ciclev10027927m.g Citrus clementina Ciclev10027927m.g I 0.854
Ciclev10030878m.g Citrus clementina Ciclev10030878m.g I 0.785
Eucgr.B02351 Eucalyptus grandis Eucgr.B02351 I 0.854
Eucgr.J01245 Eucalyptus grandis Eucgr.J01245 I 0.794
evm.TU.supercontig_1.421 Carica papaya evm.TU.supercontig_1.421 I 0.794
evm.TU.supercontig_81.127 Carica papaya evm.TU.supercontig_81.127 I 0.854
gene02230-v1.0-hybrid Fragaria vesca gene02230-v1.0-hybrid I 0.846
gene18432-v1.0-hybrid Fragaria vesca gene18432-v1.0-hybrid I 0.828
gene26492-v1.0-hybrid Fragaria vesca gene26492-v1.0-hybrid I 0.776
Gorai.003G130700 Gossypium raimondii Gorai.003G130700 I 0.875
Gorai.006G172000 Gossypium raimondii Gorai.006G172000 I 0.857
Gorai.010G200900 Gossypium raimondii Gorai.010G200900 I 0.768
Gorai.011G266100 Gossypium raimondii Gorai.011G266100 I 0.794
Gorai.013G021300 Gossypium raimondii Gorai.013G021300 I 0.794
Lus10000947.g Linum usitatissimum Lus10000947.g I 0.785
Lus10002704.g Linum usitatissimum Lus10002704.g I 0.785
Lus10010844.g Linum usitatissimum Lus10010844.g I 0.854
Lus10024385.g Linum usitatissimum Lus10024385.g I 0.854
Lus10040285.g Linum usitatissimum Lus10040285.g I 0.785
MDP0000119184 Malus domestica MDP0000119184 I 0.785
MDP0000137531 Malus domestica MDP0000137531 I 0.854
MDP0000209974 Malus domestica MDP0000209974 I 0.854
orange1.1g042386m.g Citrus sinensis orange1.1g042386m.g I 0.854
Pavir.Ea04142 Panicum virgatum Pavir.Ea04142 I 0.745
Pavir.Gb01315 Panicum virgatum Pavir.Gb01315 I 0.768
Pavir.Ia03771 Panicum virgatum Pavir.Ia03771 I 0.854
Pavir.J14051 Panicum virgatum Pavir.J14051 I 0.708
Pavir.J18132 Panicum virgatum Pavir.J18132 I 0.854
SapurV1A.0040s0420 Salix purpurea SapurV1A.0040s0420 I 0.857
SapurV1A.0041s0150 Salix purpurea SapurV1A.0041s0150 I 0.875
SapurV1A.0281s0030 Salix purpurea SapurV1A.0281s0030 I 0.767
SapurV1A.0451s0070 Salix purpurea SapurV1A.0451s0070 I 0.785
Thhalv10002472m.g Eutrema salsugineum Thhalv10002472m.g I 0.846
Thhalv10007062m.g Eutrema salsugineum Thhalv10007062m.g I 0.794
Thhalv10011058m.g Eutrema salsugineum Thhalv10011058m.g I 0.768
Thhalv10012893m.g Eutrema salsugineum Thhalv10012893m.g I 0.805
Thhalv10013086m.g Eutrema salsugineum Thhalv10013086m.g I 0.854
Thhalv10020283m.g Eutrema salsugineum Thhalv10020283m.g I 0.794
LjSGA_019393.1 Lotus japonicus LjSGA_019393.1 I 0.785
Traes_3DL_FCD561E40 Triticum aestivum Traes_3DL_FCD561E40 N 0.749
estExt_fgenesh1_pg.C_1140084 Physcomitrella patens estExt_fgenesh1_pg.C_1140084 N 0.689
Lus10016527.g Linum usitatissimum Lus10016527.g N 0.815
Lus10040795.g Linum usitatissimum Lus10040795.g N 0.815
MDP0000119092 Malus domestica MDP0000119092 N 0.875
MDP0000138764 Malus domestica MDP0000138764 N 0.875
MDP0000222004 Malus domestica MDP0000222004 N 0.875
PDK_20s1300944g001 Phoenix dactylifera PDK_20s1300944g001 N 0.857
PDK_20s1590481g002 Phoenix dactylifera PDK_20s1590481g002 N 0.875