Lus10038279.g (Linum usitatissimum)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00249 (Myb_DNA-binding) IPR014778 Lus10038279.g T288196_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
PK29550.1
M02358_2.00 		Cannabis sativa
NNHDATCYNN
NNRGATHDNN		 PBM
Weirauch et al.(2014)
pTH9595 		0.909 0.979
AT3G16350
M01078_2.00 		Arabidopsis thaliana
NYTATCYDNN
NNHRGATARN		 PBM
Sullivan et al.(2014)
pTH7149 		0.899 0.936
fgenesh1_pg.scaffold_70000111
M02342_2.00 		Physcomitrella patens
NNHNATCBN
NVGATNDNN		 PBM
Weirauch et al.(2014)
pTH8492 		0.878 0.894
PK23829.1
M02355_2.00 		Cannabis sativa
VTTATCCD
HGGATAAB		 PBM
Weirauch et al.(2014)
pTH9592 		0.871 0.894
PK00738.1
M02346_2.00 		Cannabis sativa
NYWATCYDNN
NNHRGATWRN		 PBM
Weirauch et al.(2014)
pTH9487 		0.860 0.936
PK17526.1
M02353_2.00 		Cannabis sativa
NNTTATCCAN
NTGGATAANN		 PBM
Weirauch et al.(2014)
pTH9588 		0.860 0.851
KUA1
M02312_2.00 		Arabidopsis thaliana
NNTTATCCDN
NHGGATAANN		 PBM
Weirauch et al.(2014)
pTH7647 		0.839 0.872
KUA1
M07136_2.00 		Arabidopsis thaliana
WWHHTTATCCAHWW
WWDTGGATAADDWW		 Dap-seq
OMalley et al.(2016)
At5g47390_colamp_a 		0.839 0.872
KUA1
M07137_2.00 		Arabidopsis thaliana
HHWDYHTTATCCAHW
WDTGGATAADRHWDD		 Dap-seq
OMalley et al.(2016)
At5g47390_col_b 		0.839 0.872
AT5G61620
M07149_2.00 		Arabidopsis thaliana
WWHHTTATCCAHWWN
NWWDTGGATAADDWW		 Dap-seq
OMalley et al.(2016)
AT5G61620_col_a 		0.813 0.830
AT5G61620
M07150_2.00 		Arabidopsis thaliana
YHTTATCCAHW
WDTGGATAADR		 Dap-seq
OMalley et al.(2016)
AT5G61620_colamp_a 		0.813 0.830
AT1G19000
M02287_2.00 		Arabidopsis thaliana
NYTATCYDNN
NNHRGATARN		 PBM
Weirauch et al.(2014)
pTH7120 		0.809 0.851
AT1G19000
M07012_2.00 		Arabidopsis thaliana
HDYHTTATCCAHWW
WWDTGGATAADRHD		 Dap-seq
OMalley et al.(2016)
At1g19000_col_a 		0.809 0.851
AT1G19000
M07013_2.00 		Arabidopsis thaliana
WDYNTTATCCAHWW
WWDTGGATAANRHW		 Dap-seq
OMalley et al.(2016)
At1g19000_colamp_a 		0.809 0.851
AT5G56840
M07144_2.00 		Arabidopsis thaliana
WWYMTTATCCAWWWN
NWWWTGGATAAKRWW		 Dap-seq
OMalley et al.(2016)
AT5G56840_col_a 		0.768 0.809
AT5G56840
M07145_2.00 		Arabidopsis thaliana
HHHWWYHTTATCCWHW
WDWGGATAADRWWDDD		 Dap-seq
OMalley et al.(2016)
AT5G56840_colamp_a 		0.768 0.809
0600010132
M02360_2.00 		Ostreococcus tauri
NNVTTATCCDNNN
NNNHGGATAABNN		 PBM
Weirauch et al.(2014)
pTH9441 		0.762 0.830
AT3G10580
M07072_2.00 		Arabidopsis thaliana
AWBCTTATCYWHWHH
DDWDWRGATAAGVWT		 Dap-seq
OMalley et al.(2016)
AT3G10580_col_a 		0.759 0.702
AT3G10580
M07073_2.00 		Arabidopsis thaliana
CCGAWAAWNTCGGDD
HHCCGANWTTWTCGG		 Dap-seq
OMalley et al.(2016)
AT3G10580_colamp_a 		0.759 0.702
AT1G74840
M02291_2.00 		Arabidopsis thaliana
NGWTATCCRNN
NNYGGATAWCN		 PBM
Weirauch et al.(2014)
pTH7074 		0.740 0.809
AT1G74840
M07037_2.00 		Arabidopsis thaliana
HHTTATCCAHW
WDTGGATAADD		 Dap-seq
OMalley et al.(2016)
At1g74840_col100_a 		0.740 0.809
AT1G74840
M07038_2.00 		Arabidopsis thaliana
HWNHTTATCCAHWW
WWDTGGATAADNWD		 Dap-seq
OMalley et al.(2016)
At1g74840_colamp_a 		0.740 0.809
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Lus10038279 Myb 124 171

Links

Other Myb/SANT family TFs
Other Linum usitatissimum TFs

594 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ETC1 Arabidopsis lyrata Al_scaffold_0001_92 N 0.000
CPC Arabidopsis lyrata Al_scaffold_0005_3105 N 0.000
Al_scaffold_0136_3 Arabidopsis lyrata Al_scaffold_0136_3 N 0.000
ETC1 Arabidopsis thaliana AT1G01380 N 0.000
ETC2 Arabidopsis thaliana AT2G30420 N 0.000
TCL2 Arabidopsis thaliana AT2G30424 N 0.000
TCL1 Arabidopsis thaliana AT2G30432 N 0.000
CPC Arabidopsis thaliana AT2G46410 N 0.000
ETC3 Arabidopsis thaliana AT4G01060 N 0.000
TRY Arabidopsis thaliana AT5G53200 N 0.000
Bo2g046050 Brassica oleracea Bo2g046050 N 0.000
Bo2g098940 Brassica oleracea Bo2g098940 N 0.000
Bo3g022870 Brassica oleracea Bo3g022870 N 0.000
Bo3g024610 Brassica oleracea Bo3g024610 N 0.000
Bo3g039260 Brassica oleracea Bo3g039260 N 0.000
Bo3g054440 Brassica oleracea Bo3g054440 N 0.000
Bo4g009260 Brassica oleracea Bo4g009260 N 0.000
Bo4g197120 Brassica oleracea Bo4g197120 N 0.000
Bo9g110930 Brassica oleracea Bo9g110930 N 0.000
Bra000941 Brassica rapa Bra000941 N 0.000
Bra004539 Brassica rapa Bra004539 N 0.000
Bra008539 Brassica rapa Bra008539 N 0.000
Bra022637 Brassica rapa Bra022637 N 0.000
Bra026297 Brassica rapa Bra026297 N 0.000
Bra039283 Brassica rapa Bra039283 N 0.000
TRY Arabidopsis lyrata fgenesh1_pg.C_scaffold_8001350 N 0.000
ETC3 Arabidopsis lyrata fgenesh1_pm.C_scaffold_6002892 N 0.000
TCL1 Arabidopsis lyrata fgenesh2_kg.4__1015__AT2G30432.1 N 0.000
GLYMA01G43435 Glycine max GLYMA01G43435 N 0.000
GLYMA11G02061 Glycine max GLYMA11G02061 N 0.000
GLYMA12G32130 Glycine max GLYMA12G32130 N 0.000
GSMUA_Achr10G09220_001 Musa acuminata GSMUA_Achr10G09220_001 N 0.000
GSMUA_Achr1G05080_001 Musa acuminata GSMUA_Achr1G05080_001 N 0.000
GSMUA_Achr3G25090_001 Musa acuminata GSMUA_Achr3G25090_001 N 0.000
GSMUA_Achr8G05730_001 Musa acuminata GSMUA_Achr8G05730_001 N 0.000
GSMUA_Achr8G19880_001 Musa acuminata GSMUA_Achr8G19880_001 N 0.000
GSMUA_AchrUn_randomG19730_001 Musa acuminata GSMUA_AchrUn_randomG19730_001 N 0.000
MTR_2g088730 Medicago truncatula MTR_2g088730 N 0.000
PGSC0003DMG400000212 Solanum tuberosum PGSC0003DMG400000212 N 0.000
POPTR_0002s17030 Populus trichocarpa POPTR_0002s17030 N 0.000
POPTR_0004s02060 Populus trichocarpa POPTR_0004s02060 N 0.000
POPTR_0007s02510 Populus trichocarpa POPTR_0007s02510 N 0.000
POPTR_0011s00390 Populus trichocarpa POPTR_0011s00390 N 0.000
POPTR_0012s01420 Populus trichocarpa POPTR_0012s01420 N 0.000
POPTR_0014s09200 Populus trichocarpa POPTR_0014s09200 N 0.000
POPTR_0015s02310 Populus trichocarpa POPTR_0015s02310 N 0.000
POPTR_0017s06470 Populus trichocarpa POPTR_0017s06470 N 0.000
PRUPE_ppa023853mg Prunus persica PRUPE_ppa023853mg N 0.000
PRUPE_ppa024794mg Prunus persica PRUPE_ppa024794mg N 0.000
scaffold_401530.1 Arabidopsis lyrata scaffold_401530.1 N 0.000
TCL2 Arabidopsis lyrata scaffold_401531.1 N 0.000
Solyc01g095640.1 Solanum lycopersicum Solyc01g095640.1 N 0.000
TCM_005177 Theobroma cacao TCM_005177 N 0.000
TCM_011327 Theobroma cacao TCM_011327 N 0.000
TCM_015351 Theobroma cacao TCM_015351 N 0.000
TCM_016428 Theobroma cacao TCM_016428 N 0.000
TCM_030224 Theobroma cacao TCM_030224 N 0.000
VIT_10s0116g01760 Vitis vinifera VIT_10s0116g01760 N 0.000
VIT_12s0059g02360 Vitis vinifera VIT_12s0059g02360 N 0.000
VIT_15s0046g01130 Vitis vinifera VIT_15s0046g01130 N 0.000
VIT_16s0050g02530 Vitis vinifera VIT_16s0050g02530 N 0.000
Ca_15029 Cicer arietinum Ca_15029 N 0.000
Cla011563 Citrullus lanatus Cla011563 N 0.000
Pm018400 Prunus mume Pm018400 N 0.000
Pm019781 Prunus mume Pm019781 N 0.000
29742.m001447 Ricinus communis 29742.m001447 N 0.000
30169.m006531 Ricinus communis 30169.m006531 N 0.000
cassava10382.m1 Manihot esculenta cassava10382.m1 N 0.000
cassava23225.valid.m1 Manihot esculenta cassava23225.valid.m1 N 0.000
cassava23226.valid.m1 Manihot esculenta cassava23226.valid.m1 N 0.000
cassava24285.valid.m1 Manihot esculenta cassava24285.valid.m1 N 0.000
cassava24286.valid.m1 Manihot esculenta cassava24286.valid.m1 N 0.000
cassava32987.m1 Manihot esculenta cassava32987.m1 N 0.000
cassava46504.m1 Manihot esculenta cassava46504.m1 N 0.000
Cucsa.201970 Cucumis sativus Cucsa.201970 N 0.000
mgf005142m Mimulus guttatus mgf005142m N 0.000
Aquca_013_00134 Aquilegia coerulea Aquca_013_00134 N 0.000
Aquca_028_00182 Aquilegia coerulea Aquca_028_00182 N 0.000
Aquca_037_00095 Aquilegia coerulea Aquca_037_00095 N 0.000
Bostr.13158s0169 Boechera stricta Bostr.13158s0169 N 0.000
Bostr.24513s0195 Boechera stricta Bostr.24513s0195 N 0.000
Bostr.24513s0196 Boechera stricta Bostr.24513s0196 N 0.000
Bostr.25993s0128 Boechera stricta Bostr.25993s0128 N 0.000
Bostr.26833s0960 Boechera stricta Bostr.26833s0960 N 0.000
Bostr.5325s0057 Boechera stricta Bostr.5325s0057 N 0.000
Bostr.7365s0058 Boechera stricta Bostr.7365s0058 N 0.000
Cagra.0050s0058 Capsella grandiflora Cagra.0050s0058 N 0.000
Cagra.0084s0067 Capsella grandiflora Cagra.0084s0067 N 0.000
Cagra.0483s0079 Capsella grandiflora Cagra.0483s0079 N 0.000
Cagra.0567s0009 Capsella grandiflora Cagra.0567s0009 N 0.000
Cagra.1372s0017 Capsella grandiflora Cagra.1372s0017 N 0.000
Cagra.1968s0081 Capsella grandiflora Cagra.1968s0081 N 0.000
Carubv10003403m.g Capsella rubella Carubv10003403m.g N 0.000
Carubv10011382m.g Capsella rubella Carubv10011382m.g N 0.000
Carubv10018233m.g Capsella rubella Carubv10018233m.g N 0.000
Carubv10024393m.g Capsella rubella Carubv10024393m.g N 0.000
Carubv10024406m.g Capsella rubella Carubv10024406m.g N 0.000
Carubv10024964m.g Capsella rubella Carubv10024964m.g N 0.000
Carubv10025583m.g Capsella rubella Carubv10025583m.g N 0.000
Carubv10027412m.g Capsella rubella Carubv10027412m.g N 0.000
Ciclev10006315m.g Citrus clementina Ciclev10006315m.g N 0.000
Ciclev10024111m.g Citrus clementina Ciclev10024111m.g N 0.000
Eucgr.A01720 Eucalyptus grandis Eucgr.A01720 N 0.000
Eucgr.D02360 Eucalyptus grandis Eucgr.D02360 N 0.000
Eucgr.E00069 Eucalyptus grandis Eucgr.E00069 N 0.000
Eucgr.E00851 Eucalyptus grandis Eucgr.E00851 N 0.000
Eucgr.K00332 Eucalyptus grandis Eucgr.K00332 N 0.000
Eucgr.K00803 Eucalyptus grandis Eucgr.K00803 N 0.000
evm.TU.contig_29502 Carica papaya evm.TU.contig_29502 N 0.000
evm.TU.supercontig_3.55 Carica papaya evm.TU.supercontig_3.55 N 0.000
gene19217-v1.0-hybrid Fragaria vesca gene19217-v1.0-hybrid N 0.000
gene35171-v1.0-hybrid Fragaria vesca gene35171-v1.0-hybrid N 0.000
Gorai.001G155700 Gossypium raimondii Gorai.001G155700 N 0.000
Gorai.007G107400 Gossypium raimondii Gorai.007G107400 N 0.000
Lus10005949.g Linum usitatissimum Lus10005949.g N 0.000
Lus10014933.g Linum usitatissimum Lus10014933.g N 0.000
Lus10038822.g Linum usitatissimum Lus10038822.g N 0.000
MDP0000141474 Malus domestica MDP0000141474 N 0.000
MDP0000216918 Malus domestica MDP0000216918 N 0.000
MDP0000547418 Malus domestica MDP0000547418 N 0.000
MDP0000583070 Malus domestica MDP0000583070 N 0.000
MDP0000718806 Malus domestica MDP0000718806 N 0.000
orange1.1g034546m.g Citrus sinensis orange1.1g034546m.g N 0.000
SapurV1A.0013s0580 Salix purpurea SapurV1A.0013s0580 N 0.000
SapurV1A.0190s0070 Salix purpurea SapurV1A.0190s0070 N 0.000
SapurV1A.0345s0340 Salix purpurea SapurV1A.0345s0340 N 0.000
SapurV1A.0346s0010 Salix purpurea SapurV1A.0346s0010 N 0.000
SapurV1A.0377s0050 Salix purpurea SapurV1A.0377s0050 N 0.000
SapurV1A.0722s0160 Salix purpurea SapurV1A.0722s0160 N 0.000
SapurV1A.0928s0060 Salix purpurea SapurV1A.0928s0060 N 0.000
SapurV1A.1106s0040 Salix purpurea SapurV1A.1106s0040 N 0.000
SapurV1A.1227s0050 Salix purpurea SapurV1A.1227s0050 N 0.000
SapurV1A.2295s0020 Salix purpurea SapurV1A.2295s0020 N 0.000
SapurV1A.2893s0010 Salix purpurea SapurV1A.2893s0010 N 0.000
Thhalv10001695m.g Eutrema salsugineum Thhalv10001695m.g N 0.000
Thhalv10015741m.g Eutrema salsugineum Thhalv10015741m.g N 0.000
Thhalv10017480m.g Eutrema salsugineum Thhalv10017480m.g N 0.000
Thhalv10029104m.g Eutrema salsugineum Thhalv10029104m.g N 0.000
PDK_20s1307674g001 Phoenix dactylifera PDK_20s1307674g001 N 0.000
PDK_20s1335581g001 Phoenix dactylifera PDK_20s1335581g001 N 0.000