orange1.1g045434m.g (Citrus sinensis)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00249 (Myb_DNA-binding) IPR014778 orange1.1g045434m.g T288932_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AtMYB93
M07020_2.00 		Arabidopsis thaliana
HDNYYYAMCWAMYHHHHHHHH
DDDDDDDDRKTWGKTRRRNHD		 Dap-seq
OMalley et al.(2016)
MYB93_col_a 		0.828 0.892
AtMYB93
M07021_2.00 		Arabidopsis thaliana
NNHNBYYYAMCWAMY
RKTWGKTRRRVNDNN		 Dap-seq
OMalley et al.(2016)
MYB93_colamp_a 		0.828 0.892
MYB92
M07123_2.00 		Arabidopsis thaliana
NHHACCTAMY
RKTAGGTDDN		 Dap-seq
OMalley et al.(2016)
MYB92_100ng20cy_b 		0.789 0.871
MYB92
M07124_2.00 		Arabidopsis thaliana
NNNNWNNYYYACCWAMYHH
DDRKTWGGTRRRNNWNNNN		 Dap-seq
OMalley et al.(2016)
MYB92_colamp_a 		0.789 0.871
MYB107
M07061_2.00 		Arabidopsis thaliana
NDDWDBBYYACCWAMYHH
DDRKTWGGTRRVVHWHHN		 Dap-seq
OMalley et al.(2016)
MYB107_col_a 		0.781 0.839
MYB107
M07062_2.00 		Arabidopsis thaliana
WNBYYYACCWAMYH
DRKTWGGTRRRVNW		 Dap-seq
OMalley et al.(2016)
MYB107_colamp_a 		0.781 0.839
MYB106
M11040_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$AT3G01140_01 		0.771 0.774
AtMYB17
M07099_2.00 		Arabidopsis thaliana
YYYACCWACCWHHHH
DDDDWGGTWGGTRRR		 Dap-seq
OMalley et al.(2016)
MYB17_colamp_a 		0.729 0.731
PK28187.1
M01286_2.00 		Cannabis sativa
TACCTACC
GGTAGGTA		 PBM
Lambert et al.(2019)
pTH11305 		0.715 0.817
AtMYB74
M07104_2.00 		Arabidopsis thaliana
NYYYACCTAMYWHH
DDWRKTAGGTRRRN		 Dap-seq
OMalley et al.(2016)
MYB74_colamp_a 		0.682 0.774
AtMYB74
M07105_2.00 		Arabidopsis thaliana
BYHYACCTAMYHHH
DDDRKTAGGTRDRV		 Dap-seq
OMalley et al.(2016)
MYB74_col 		0.682 0.774
MYB39
M07106_2.00 		Arabidopsis thaliana
NYYYACCTAMYWHH
DDWRKTAGGTRRRN		 Dap-seq
OMalley et al.(2016)
MYB39_col_a 		0.675 0.753
MYB39
M07107_2.00 		Arabidopsis thaliana
NYYYACCWAMYWHHHHHHHNH
DNDDDDDDDWRKTWGGTRRRN		 Dap-seq
OMalley et al.(2016)
MYB39_colamp_a 		0.675 0.753
MYB58
M07005_2.00 		Arabidopsis thaliana
NNYYYACCWAMCHHH
DDDGKTWGGTRRRNN		 Dap-seq
OMalley et al.(2016)
MYB58_col_a 		0.665 0.699
MYB58
M07006_2.00 		Arabidopsis thaliana
HNNYHYACCWAMCHHHNNNNH
DNNNNDDDGKTWGGTRDRNND		 Dap-seq
OMalley et al.(2016)
MYB58_colamp_a 		0.665 0.699
ATY53
M07078_2.00 		Arabidopsis thaliana
YBYACCWAMCDHHNNNNNNNN
NNNNNNNNDDHGKTWGGTRVR		 Dap-seq
OMalley et al.(2016)
MYB67_col_a 		0.663 0.667
MYB55
M00876_2.00 		Arabidopsis thaliana
ACCWAMCD
HGKTWGGT		 PBM
Franco-Zorrilla et al.(2014)
MYB55 		0.663 0.667
MYB55
M07102_2.00 		Arabidopsis thaliana
HNNNHBYAMCWAMCD
HGKTWGKTRVDNNND		 Dap-seq
OMalley et al.(2016)
MYB55_colamp_a 		0.663 0.667
MYB55
M07103_2.00 		Arabidopsis thaliana
NYNYAMCHACCRHH
DDYGGTDGKTRNRN		 Dap-seq
OMalley et al.(2016)
MYB55_col 		0.663 0.667
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
orange1.1g045434m Myb 14 61
orange1.1g045434m Myb 67 112

Links

Other Myb/SANT family TFs
Other Citrus sinensis TFs

790 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
hlh-1 Caenorhabditis elegans WBGene00001948 D
NECAME_14163 Necator americanus NECAME_14163 I
ASU_01867 Ascaris suum ASU_01867 I
BXY_0489100 Bursaphelenchus xylophilus BXY_0489100 I
DICVIV_08170 Dictyocaulus viviparus DICVIV_08170 I
EEL_0000993601 Elaeophora elaphi EEL_0000993601 I
EVEC_0000720901 Enterobius vermicularis EVEC_0000720901 I
HCOI02168200 Haemonchus contortus HCOI02168200 I
nAv.1.0.1.g02052 Acanthocheilonema viteae nAv.1.0.1.g02052 I
nDi.2.2.2.g00288 Dirofilaria immitis nDi.2.2.2.g00288 I
ASIM_0001156501 Anisakis simplex ASIM_0001156501 I
nLs.2.1.2.g06915 Litomosoides sigmodontis nLs.2.1.2.g06915 I
nOo.2.0.1.g00910 Onchocerca ochengi nOo.2.0.1.g00910 I
OFLC_0000064301 Onchocerca flexuosa OFLC_0000064301 I
scaffold6-EXSNAP2012.144 Pristionchus exspectatus scaffold6-EXSNAP2012.144 I
SMUV_0000995901 Syphacia muris SMUV_0000995901 I
TCLT_0000019401 Thelazia callipaeda TCLT_0000019401 I
TELCIR_07640 Teladorsagia circumcincta TELCIR_07640 I
TELCIR_14945 Teladorsagia circumcincta TELCIR_14945 I
TC015855 Tribolium castaneum TC015855 I
CapteG36721 Capitella teleta CapteG36721 I
CBG13470 Caenorhabditis briggsae CBG13470 I
CBN11281 Caenorhabditis brenneri CBN11281 I
CGI_10007380 Crassostrea gigas CGI_10007380 I
CJA13327 Caenorhabditis japonica CJA13327 I
CRE17301 Caenorhabditis remanei CRE17301 I
LOAG_16988 Loa loa LOAG_16988 I
Ppa-hlh-1 Pristionchus pacificus PPA08246 I
Bm1750 Brugia malayi Bm1750 I
WBGene00247572 Onchocerca volvulus WBGene00247572 I
YQE_11476 Dendroctonus ponderosae YQE_11476 I
Ocbimv22002759m.g Octopus bimaculoides Ocbimv22002759m.g I
LDEC009949 Leptinotarsa decemlineata LDEC009949 I
ACOC_0000253201 Angiostrongylus costaricensis ACOC_0000253201 I
ALUE_0000745301 Ascaris lumbricoides ALUE_0000745301 I
ANCCEY_00328 Ancylostoma ceylanicum ANCCEY_00328 I
BTMF_0000215901 Brugia timori BTMF_0000215901 N