Pavir.J07395 (Panicum virgatum)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00249 (Myb_DNA-binding) IPR014778 Pavir.J07395 T289340_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Q948S5_TOBAC
M11074_2.00 		Nicotiana tabacum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MYBA2_01 		0.730 0.835
MYB3R4
M07125_2.00 		Arabidopsis thaliana
NDWWNTDRCCGTTRN
NYAACGGYHANWWHN		 Dap-seq
OMalley et al.(2016)
MYB3R4_col_a 		0.713 0.806
PC-MYB1
M07110_2.00 		Arabidopsis thaliana
NDWWNTDRCCGTTRN
NYAACGGYHANWWHN		 Dap-seq
OMalley et al.(2016)
MYB3R1_col_a 		0.699 0.799
PC-MYB1
M07111_2.00 		Arabidopsis thaliana
DWHNTDRCCGTTR
YAACGGYHANDWH		 Dap-seq
OMalley et al.(2016)
MYB3R1_colamp_a 		0.699 0.799
PK12011.1
M01279_2.00 		Cannabis sativa
HAACGGHHNN
NNDDCCGTTD		 PBM
Lambert et al.(2019)
pTH11423 		0.689 0.813
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.J07395.1.p Myb 48 94
Pavir.J07395.1.p Myb 100 146
Pavir.J07395.1.p Myb 152 196
Pavir.J07395.2.p Myb 48 94
Pavir.J07395.2.p Myb 100 146
Pavir.J07395.2.p Myb 152 196

Links

Other Myb/SANT family TFs
Other Panicum virgatum TFs

101 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
TBX2 Homo sapiens ENSG00000121068 D 0.000
TBX3 Homo sapiens ENSG00000135111 D 0.000
TBX2 Gasterosteus aculeatus ENSGACG00000013575 D 0.000
Tbx2 Mus musculus ENSMUSG00000000093 D 0.000
Tbx3 Mus musculus ENSMUSG00000018604 D 0.000
TBX2 Takifugu rubripes ENSTRUG00000008297 D 0.000
Doc3 Drosophila melanogaster FBgn0035954 D 0.000
XP_008203914.1 Nasonia vitripennis XP_008203914.1 D 0.000
AAEL018223 Aedes aegypti AAEL018223 I 0.000
ACYPI000143 Acyrthosiphon pisum ACYPI000143 I 0.000
Bm3498 Brugia malayi Bm3498 I 0.000
CapteG163410 Capitella teleta CapteG163410 I 0.000
CBG21316 Caenorhabditis briggsae CBG21316 I 0.000
CBN26017 Caenorhabditis brenneri CBN26017 I 0.000
CGI_10016324 Crassostrea gigas CGI_10016324 I 0.000
CGI_10016325 Crassostrea gigas CGI_10016325 I 0.000
CJA11793 Caenorhabditis japonica CJA11793 I 0.000
CRE29327 Caenorhabditis remanei CRE29327 I 0.000
DAPPUDRAFT_13272 Daphnia pulex DAPPUDRAFT_13272 I 0.000
EFV62265 Trichinella spiralis EFV62265 I 0.000
ENSAMEG00000001090 Ailuropoda melanoleuca ENSAMEG00000001090 I 0.000
ENSAMEG00000008826 Ailuropoda melanoleuca ENSAMEG00000008826 I 0.000
ENSAMXG00000001528 Astyanax mexicanus ENSAMXG00000001528 I 0.000
ENSAMXG00000007070 Astyanax mexicanus ENSAMXG00000007070 I 0.000
ENSAMXG00000009197 Astyanax mexicanus ENSAMXG00000009197 I 0.000
ENSAPLG00000010653 Anas platyrhynchos ENSAPLG00000010653 I 0.000
TBX2 Bos taurus ENSBTAG00000014278 I 0.000
TBX3 Bos taurus ENSBTAG00000021706 I 0.000
TBX3 Canis familiaris ENSCAFG00000009216 I 0.000
ENSCING00000008678 Ciona intestinalis ENSCING00000008678 I 0.000
TBX3 Callithrix jacchus ENSCJAG00000009716 I 0.000
ENSCPOG00000001042 Cavia porcellus ENSCPOG00000001042 I 0.000
TBX3 Cavia porcellus ENSCPOG00000003952 I 0.000
ENSCSAG00000002344 Chlorocebus sabaeus ENSCSAG00000002344 I 0.000
ENSCSAVG00000009650 Ciona savignyi ENSCSAVG00000009650 I 0.000
tbx3a Danio rerio ENSDARG00000002216 I 0.000
tbx2b Danio rerio ENSDARG00000006120 I 0.000
tbx2a Danio rerio ENSDARG00000018025 I 0.000
tbx3b Danio rerio ENSDARG00000061509 I 0.000
TBX3 Dasypus novemcinctus ENSDNOG00000044358 I 0.000
ENSECAG00000012861 Equus caballus ENSECAG00000012861 I 0.000
TBX2 Equus caballus ENSECAG00000024480 I 0.000
TBX3 Erinaceus europaeus ENSEEUG00000008506 I 0.000
ENSFALG00000005458 Ficedula albicollis ENSFALG00000005458 I 0.000
ENSFALG00000007792 Ficedula albicollis ENSFALG00000007792 I 0.000
tbx3a Gasterosteus aculeatus ENSGACG00000016783 I 0.000
tbx2b Gasterosteus aculeatus ENSGACG00000020309 I 0.000
ENSGALG00000008250 Gallus gallus ENSGALG00000008250 I 0.000
ENSGALG00000023577 Gallus gallus ENSGALG00000023577 I 0.000
TBX3 Gorilla gorilla ENSGGOG00000004238 I 0.000
ENSGMOG00000002896 Gadus morhua ENSGMOG00000002896 I 0.000
ENSGMOG00000011728 Gadus morhua ENSGMOG00000011728 I 0.000
ENSGMOG00000012645 Gadus morhua ENSGMOG00000012645 I 0.000
ENSLACG00000006293 Latimeria chalumnae ENSLACG00000006293 I 0.000
ENSLACG00000015364 Latimeria chalumnae ENSLACG00000015364 I 0.000
TBX3 Loxodonta africana ENSLAFG00000002948 I 0.000
TBX2 Loxodonta africana ENSLAFG00000006596 I 0.000
ENSLOCG00000005074 Lepisosteus oculatus ENSLOCG00000005074 I 0.000
ENSLOCG00000007598 Lepisosteus oculatus ENSLOCG00000007598 I 0.000
ENSMEUG00000010232 Macropus eugenii ENSMEUG00000010232 I 0.000
TBX4 Meleagris gallopavo ENSMGAG00000007617 I 0.000
ENSMGAG00000010084 Meleagris gallopavo ENSMGAG00000010084 I 0.000
TBX3 Microcebus murinus ENSMICG00000010947 I 0.000
TBX2 Microcebus murinus ENSMICG00000016649 I 0.000
TBX3 Myotis lucifugus ENSMLUG00000007567 I 0.000
TBX2 Myotis lucifugus ENSMLUG00000011673 I 0.000
ENSMMUG00000009859 Macaca mulatta ENSMMUG00000009859 I 0.000
TBX3 Macaca mulatta ENSMMUG00000015070 I 0.000
TBX3 Monodelphis domestica ENSMODG00000012059 I 0.000
TBX2 Monodelphis domestica ENSMODG00000014204 I 0.000
ENSMPUG00000002720 Mustela putorius furo ENSMPUG00000002720 I 0.000
ENSMPUG00000015118 Mustela putorius furo ENSMPUG00000015118 I 0.000
ENSNLEG00000000224 Nomascus leucogenys ENSNLEG00000000224 I 0.000
ENSNLEG00000000423 Nomascus leucogenys ENSNLEG00000000423 I 0.000
TBX3 Ornithorhynchus anatinus ENSOANG00000007095 I 0.000
ENSOARG00000006249 Ovis aries ENSOARG00000006249 I 0.000
TBX3 Oryctolagus cuniculus ENSOCUG00000014595 I 0.000
TBX2 Otolemur garnettii ENSOGAG00000014815 I 0.000
TBX3 Otolemur garnettii ENSOGAG00000016212 I 0.000
ENSONIG00000000187 Oreochromis niloticus ENSONIG00000000187 I 0.000
ENSONIG00000001919 Oreochromis niloticus ENSONIG00000001919 I 0.000
ENSONIG00000010454 Oreochromis niloticus ENSONIG00000010454 I 0.000
ENSONIG00000011959 Oreochromis niloticus ENSONIG00000011959 I 0.000
TBX3 Ochotona princeps ENSOPRG00000004462 I 0.000
TBX2 Ochotona princeps ENSOPRG00000012183 I 0.000
tbx3a Oryzias latipes ENSORLG00000007316 I 0.000
tbx2b Oryzias latipes ENSORLG00000010011 I 0.000
TBX2 Oryzias latipes ENSORLG00000014792 I 0.000
ENSPANG00000008730 Papio anubis ENSPANG00000008730 I 0.000
ENSPFOG00000016384 Poecilia formosa ENSPFOG00000016384 I 0.000
ENSPFOG00000024759 Poecilia formosa ENSPFOG00000024759 I 0.000
ENSPPYG00000004995 Pongo abelii ENSPPYG00000004995 I 0.000
ENSPSIG00000017536 Pelodiscus sinensis ENSPSIG00000017536 I 0.000
TBX2 Pan troglodytes ENSPTRG00000009489 I 0.000
TBX3 Pan troglodytes ENSPTRG00000023749 I 0.000
Tbx3 Rattus norvegicus ENSRNOG00000008706 I 0.000
ENSSHAG00000004253 Sarcophilus harrisii ENSSHAG00000004253 I 0.000
ENSSHAG00000012290 Sarcophilus harrisii ENSSHAG00000012290 I 0.000
TBX3 Sus scrofa ENSSSCG00000009865 I 0.000
TBX2 Sus scrofa ENSSSCG00000027060 I 0.000
ENSSTOG00000009350 Ictidomys tridecemlineatus ENSSTOG00000009350 I 0.000
ENSSTOG00000009817 Ictidomys tridecemlineatus ENSSTOG00000009817 I 0.000
TBX3 Tupaia belangeri ENSTBEG00000014612 I 0.000
TBX2 Taeniopygia guttata ENSTGUG00000007813 I 0.000
tbx3a Tetraodon nigroviridis ENSTNIG00000009035 I 0.000
tbx2b Tetraodon nigroviridis ENSTNIG00000010765 I 0.000
TBX2 Tetraodon nigroviridis ENSTNIG00000014395 I 0.000
tbx3a Takifugu rubripes ENSTRUG00000015097 I 0.000
ENSTSYG00000008994 Tarsius syrichta ENSTSYG00000008994 I 0.000
TBX2 Tursiops truncatus ENSTTRG00000004541 I 0.000
ENSXMAG00000000486 Xiphophorus maculatus ENSXMAG00000000486 I 0.000
ENSXMAG00000005372 Xiphophorus maculatus ENSXMAG00000005372 I 0.000
ENSXMAG00000005715 Xiphophorus maculatus ENSXMAG00000005715 I 0.000
bi Drosophila melanogaster FBgn0000179 I 0.000
bi Drosophila virilis FBgn0020983 I 0.000
GA18655 Drosophila pseudoobscura FBgn0078655 I 0.000
GF24374 Drosophila ananassae FBgn0101368 I 0.000
GG14368 Drosophila erecta FBgn0106627 I 0.000
GL14298 Drosophila persimilis FBgn0151903 I 0.000
GL15033 Drosophila persimilis FBgn0152637 I 0.000
GM12345 Drosophila sechellia FBgn0167282 I 0.000
GM25112 Drosophila sechellia FBgn0179973 I 0.000
GD14148 Drosophila simulans FBgn0185836 I 0.000
GK12352 Drosophila willistoni FBgn0214362 I 0.000
GK15734 Drosophila willistoni FBgn0217737 I 0.000
GE16345 Drosophila yakuba FBgn0233875 I 0.000
GE20799 Drosophila yakuba FBgn0238093 I 0.000
GA22741 Drosophila pseudoobscura FBgn0244144 I 0.000
GB49684 Apis mellifera GB49684 I 0.000
HelroG63904 Helobdella robusta HelroG63904 I 0.000
HelroG71638 Helobdella robusta HelroG71638 I 0.000
LotgiG116991 Lottia gigantea LotgiG116991 I 0.000
NEMVEDRAFT_v1g102530 Nematostella vectensis NEMVEDRAFT_v1g102530 I 0.000
SPU_023386 Strongylocentrotus purpuratus SPU_023386 I 0.000
tetur33g01070 Tetranychus urticae tetur33g01070 I 0.000
WBGene00245873 Onchocerca volvulus WBGene00245873 I 0.000
Afo_R010397 Aptenodytes forsteri Afo_R010397 I 0.000
Alligator_sinensis_CCG002051.1 Alligator sinensis Alligator_sinensis_CCG002051.1 I 0.000
Alligator_sinensis_CCG008095.1 Alligator sinensis Alligator_sinensis_CCG008095.1 I 0.000
Cmyd_10016207 Chelonia mydas Cmyd_10016207 I 0.000
Cmyd_10018098 Chelonia mydas Cmyd_10018098 I 0.000
ENSBTAP00000028930-D1 Bos grunniens ENSBTAP00000028930-D1 I 0.000
ENSP00000257566 Macaca fascicularis ENSP00000257566 I 0.000
Gfo_R010838 Geospiza fortis Gfo_R010838 I 0.000
Myotis_brandtii_Tbx3_10028216 Myotis brandtii Myotis_brandtii_Tbx3_10028216 I 0.000
Ogr02099 Ophisaurus gracilis Ogr02099 I 0.000
Ogr11256 Ophisaurus gracilis Ogr11256 I 0.000
Pvit_13524 Pogona vitticeps Pvit_13524 I 0.000
Pvit_16429 Pogona vitticeps Pvit_16429 I 0.000
fgenesh2_pg.scaffold_89000016 Branchiostoma floridae fgenesh2_pg.scaffold_89000016 I 0.000
AAI57537 Xenopus tropicalis AAI57537 I 0.000
SMU15026199 Schmidtea mediterranea SMU15026199 I 0.000
tbx2 Xenopus tropicalis XB-GENE-1018115 I 0.000
tbx2.L Xenopus laevis XB-GENE-1018122 I 0.000
tbx3 Xenopus tropicalis XB-GENE-1018231 I 0.000
tbx3.S Xenopus laevis XB-GENE-1018237 I 0.000
tbx3.L Xenopus laevis XB-GENE-6252891 I 0.000
tbx2.S Xenopus laevis XB-GENE-6255176 I 0.000
ACAC_0001257201 Angiostrongylus cantonensis ACAC_0001257201 I 0.000
ACOC_0000095801 Angiostrongylus costaricensis ACOC_0000095801 I 0.000
ANCCAN_17341 Ancylostoma caninum ANCCAN_17341 I 0.000
ANCCEY_07585 Ancylostoma ceylanicum ANCCEY_07585 I 0.000
ASU_08095 Ascaris suum ASU_08095 I 0.000
D917_09589 Trichinella nativa D917_09589 I 0.000
D918_00588 Trichuris suis D918_00588 I 0.000
DICVIV_03029 Dictyocaulus viviparus DICVIV_03029 I 0.000
Hba_14542 Heterorhabditis bacteriophora Hba_14542 I 0.000
HCOI00950300 Haemonchus contortus HCOI00950300 I 0.000
HNAJ_0001193901 Hymenolepis nana HNAJ_0001193901 I 0.000
HPLM_0000823101 Haemonchus placei HPLM_0000823101 I 0.000
L596_g26549 Steinernema carpocapsae L596_g26549 I 0.000
L889_g18009 Steinernema feltiae L889_g18009 I 0.000
L892_g3119 Steinernema scapterisci L892_g3119 I 0.000
L893_g17881 Steinernema glaseri L893_g17881 I 0.000
L898_g10464 Steinernema monticolum L898_g10464 I 0.000
NECAME_13239 Necator americanus NECAME_13239 I 0.000
PTRK_0001005500 Parastrongyloides trichosuri PTRK_0001005500 I 0.000
RSKR_0000042800 Rhabditophanes kr3021 RSKR_0000042800 I 0.000
RSKR_0001075800 Rhabditophanes kr3021 RSKR_0001075800 I 0.000
SPAL_0001704100 Strongyloides papillosus SPAL_0001704100 I 0.000
SSTP_0000270400 Strongyloides stercoralis SSTP_0000270400 I 0.000
SVE_1909900 Strongyloides venezuelensis SVE_1909900 I 0.000
TELCIR_02934 Teladorsagia circumcincta TELCIR_02934 I 0.000
TMUE_s0121001900 Trichuris muris TMUE_s0121001900 I 0.000
TTRE_0000604401 Trichuris trichiura TTRE_0000604401 I 0.000