CRE29327 (Caenorhabditis remanei)
T-box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00907 (T-box) IPR001699 CRE29327 T339558_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
XP_008203914.1
M01029_2.00 		Nasonia vitripennis
AGGTGTBA
TVACACCT		 PBM
SebePedros et al.(2013)
pTH9336 		0.781 0.696
XP_001195863
M02498_2.00 		Strongylocentrotus purpuratus
AGGTGTBA
TVACACCT		 PBM
Weirauch et al.(2014)
pTH9340 		0.770 0.608
Tbx3
M00834_2.00 		Mus musculus
NHNDCACNHN
NDNGTGHNDN		 PBM
Weirauch et al.(2013)
pTH3998 		0.766 0.729
TBX3
M05801_2.00 		Homo sapiens
NDSGTGTBRN
NYVACACSHN		 SELEX
Yin et al.(2017)
TBX3_eDBD_HT-SELEX 		0.766 0.729
TBX3
M09426_2.00 		Homo sapiens
DVDGGTGBNAR
YTNVCACCHBH		 Misc
Kulakovskiy et al.(2013)
TBX3_HUMAN.H11MO.0.C 		0.766 0.729
Tbx3
M09429_2.00 		Mus musculus
RRGGTGBBR
YVVCACCYY		 Misc
Kulakovskiy et al.(2013)
TBX3_MOUSE.H11MO.0.B 		0.766 0.729
TBX3
M05802_2.00 		Homo sapiens
DAGGTGTKAN
NTMACACCTH		 SELEX
Yin et al.(2017)
TBX3_eDBD_Methyl-HT-SELEX 		0.766 0.729
Tbx2
M00830_2.00 		Mus musculus
NYVDCACBHN
NDVGTGHBRN		 PBM
Weirauch et al.(2013)
pTH3751 		0.766 0.718
TBX2
M03556_2.00 		Homo sapiens
GGTGTKADDWNTVACACB
VGTGTBANWHHTMACACC		 SELEX
Jolma et al.(2013)
TBX2_1 		0.766 0.718
TBX2
M03557_2.00 		Homo sapiens
NAGGTGTBAWN
NWTVACACCTN		 SELEX
Jolma et al.(2013)
TBX2_2 		0.766 0.718
TBX2
M05799_2.00 		Homo sapiens
NNVRCRCNNN
NNNGYGYBNN		 SELEX
Yin et al.(2017)
TBX2_eDBD_HT-SELEX 		0.766 0.718
Tbx2
M08044_2.00 		Mus musculus
GCHYBCTGGGADHTGTAGTYH
DRACTACADHTCCCAGVRDGC		 ChIP-seq
Chen et al.(2011)
SRP001585_Tbx2 		0.766 0.718
TBX2
M11381_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$TBX2_Q2 		0.766 0.718
TBX2
M11382_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$TBX2_Q5 		0.766 0.718
TBX2
M05800_2.00 		Homo sapiens
NNVRCRCBNN
NNVGYGYBNN		 SELEX
Yin et al.(2017)
TBX2_eDBD_Methyl-HT-SELEX 		0.766 0.718
TBX2
M02495_2.00 		Gasterosteus aculeatus
NNVDCACNHN
NDNGTGHBNN		 PBM
Weirauch et al.(2014)
pTH9182 		0.735 0.707
TBX2
M02496_2.00 		Takifugu rubripes
DAGGTGTBRN
NYVACACCTH		 PBM
Weirauch et al.(2014)
pTH9289 		0.735 0.702
For this family, TFs with SR scores > 0.734 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
CRE29327 T-box 103 283

Links

Other T-box family TFs
Other Caenorhabditis remanei TFs

179 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
CBG21316 Caenorhabditis briggsae CBG21316 I 0.917
CBN26017 Caenorhabditis brenneri CBN26017 I 0.908
CJA11793 Caenorhabditis japonica CJA11793 I 0.904
tbx-2 Caenorhabditis elegans WBGene00006543 I 0.869
Hba_14542 Heterorhabditis bacteriophora Hba_14542 I 0.829
PTRK_0001005500 Parastrongyloides trichosuri PTRK_0001005500 I 0.828
ACAC_0001257201 Angiostrongylus cantonensis ACAC_0001257201 I 0.827
ACOC_0000095801 Angiostrongylus costaricensis ACOC_0000095801 I 0.827
ANCCAN_17341 Ancylostoma caninum ANCCAN_17341 I 0.827
ANCCEY_07585 Ancylostoma ceylanicum ANCCEY_07585 I 0.827
DICVIV_03029 Dictyocaulus viviparus DICVIV_03029 I 0.827
HCOI00950300 Haemonchus contortus HCOI00950300 I 0.827
HPLM_0000823101 Haemonchus placei HPLM_0000823101 I 0.827
TELCIR_02934 Teladorsagia circumcincta TELCIR_02934 I 0.827
SPAL_0001704100 Strongyloides papillosus SPAL_0001704100 I 0.817
SSTP_0000270400 Strongyloides stercoralis SSTP_0000270400 I 0.817
SVE_1909900 Strongyloides venezuelensis SVE_1909900 I 0.817
WBGene00245873 Onchocerca volvulus WBGene00245873 I 0.806
NECAME_13239 Necator americanus NECAME_13239 I 0.799
Bm3498 Brugia malayi Bm3498 I 0.796
ASU_08095 Ascaris suum ASU_08095 I 0.796
ENSONIG00000011959 Oreochromis niloticus ENSONIG00000011959 I 0.792
RSKR_0001075800 Rhabditophanes kr3021 RSKR_0001075800 I 0.786
L596_g26549 Steinernema carpocapsae L596_g26549 I 0.785
L892_g3119 Steinernema scapterisci L892_g3119 I 0.785
ACYPI000143 Acyrthosiphon pisum ACYPI000143 I 0.783
ENSAMXG00000009197 Astyanax mexicanus ENSAMXG00000009197 I 0.783
tbx3a Danio rerio ENSDARG00000002216 I 0.783
tbx3a Gasterosteus aculeatus ENSGACG00000016783 I 0.783
ENSGMOG00000011728 Gadus morhua ENSGMOG00000011728 I 0.783
ENSONIG00000000187 Oreochromis niloticus ENSONIG00000000187 I 0.783
tbx3a Oryzias latipes ENSORLG00000007316 I 0.783
ENSPFOG00000024759 Poecilia formosa ENSPFOG00000024759 I 0.783
tbx3a Tetraodon nigroviridis ENSTNIG00000009035 I 0.783
tbx3a Takifugu rubripes ENSTRUG00000015097 I 0.783
ENSXMAG00000005372 Xiphophorus maculatus ENSXMAG00000005372 I 0.783
tetur33g01070 Tetranychus urticae tetur33g01070 I 0.783
AAEL018223 Aedes aegypti AAEL018223 I 0.782
EFV62265 Trichinella spiralis EFV62265 I 0.781
GB49684 Apis mellifera GB49684 I 0.781
XP_008203914.1 Nasonia vitripennis XP_008203914.1 D 0.781
D917_09589 Trichinella nativa D917_09589 I 0.781
RSKR_0000042800 Rhabditophanes kr3021 RSKR_0000042800 I 0.780
ENSLOCG00000007598 Lepisosteus oculatus ENSLOCG00000007598 I 0.778
SPU_023386 Strongylocentrotus purpuratus SPU_023386 I 0.775
DAPPUDRAFT_13272 Daphnia pulex DAPPUDRAFT_13272 I 0.772
bi Drosophila melanogaster FBgn0000179 I 0.772
bi Drosophila virilis FBgn0020983 I 0.772
GL14298 Drosophila persimilis FBgn0151903 I 0.772
GM12345 Drosophila sechellia FBgn0167282 I 0.772
GK15734 Drosophila willistoni FBgn0217737 I 0.772
GE16345 Drosophila yakuba FBgn0233875 I 0.772
GA22741 Drosophila pseudoobscura FBgn0244144 I 0.772
tbx2.S Xenopus laevis XB-GENE-6255176 I 0.772
D918_00588 Trichuris suis D918_00588 I 0.772
TMUE_s0121001900 Trichuris muris TMUE_s0121001900 I 0.772
TTRE_0000604401 Trichuris trichiura TTRE_0000604401 I 0.772
HelroG71638 Helobdella robusta HelroG71638 I 0.770
XP_001195863 Strongylocentrotus purpuratus XP_001195863 D 0.770
tbx3.S Xenopus laevis XB-GENE-1018237 I 0.768
L889_g18009 Steinernema feltiae L889_g18009 I 0.767
L893_g17881 Steinernema glaseri L893_g17881 I 0.767
ENSAMEG00000001090 Ailuropoda melanoleuca ENSAMEG00000001090 I 0.766
ENSAMEG00000008826 Ailuropoda melanoleuca ENSAMEG00000008826 I 0.766
ENSAMXG00000007070 Astyanax mexicanus ENSAMXG00000007070 I 0.766
TBX2 Bos taurus ENSBTAG00000014278 I 0.766
TBX3 Bos taurus ENSBTAG00000021706 I 0.766
TBX3 Canis familiaris ENSCAFG00000009216 I 0.766
TBX3 Callithrix jacchus ENSCJAG00000009716 I 0.766
ENSCPOG00000001042 Cavia porcellus ENSCPOG00000001042 I 0.766
TBX3 Cavia porcellus ENSCPOG00000003952 I 0.766
ENSCSAG00000002344 Chlorocebus sabaeus ENSCSAG00000002344 I 0.766
tbx2a Danio rerio ENSDARG00000018025 I 0.766
TBX3 Dasypus novemcinctus ENSDNOG00000044358 I 0.766
ENSECAG00000012861 Equus caballus ENSECAG00000012861 I 0.766
TBX3 Erinaceus europaeus ENSEEUG00000008506 I 0.766
ENSFALG00000005458 Ficedula albicollis ENSFALG00000005458 I 0.766
ENSFALG00000007792 Ficedula albicollis ENSFALG00000007792 I 0.766
TBX2 Homo sapiens ENSG00000121068 D 0.766
TBX3 Homo sapiens ENSG00000135111 D 0.766
ENSGALG00000008250 Gallus gallus ENSGALG00000008250 I 0.766
ENSGALG00000023577 Gallus gallus ENSGALG00000023577 I 0.766
TBX3 Gorilla gorilla ENSGGOG00000004238 I 0.766
ENSLACG00000006293 Latimeria chalumnae ENSLACG00000006293 I 0.766
TBX3 Loxodonta africana ENSLAFG00000002948 I 0.766
TBX2 Loxodonta africana ENSLAFG00000006596 I 0.766
ENSLOCG00000005074 Lepisosteus oculatus ENSLOCG00000005074 I 0.766
ENSMEUG00000010232 Macropus eugenii ENSMEUG00000010232 I 0.766
ENSMGAG00000010084 Meleagris gallopavo ENSMGAG00000010084 I 0.766
TBX3 Microcebus murinus ENSMICG00000010947 I 0.766
TBX2 Microcebus murinus ENSMICG00000016649 I 0.766
TBX3 Myotis lucifugus ENSMLUG00000007567 I 0.766
TBX2 Myotis lucifugus ENSMLUG00000011673 I 0.766
ENSMMUG00000009859 Macaca mulatta ENSMMUG00000009859 I 0.766
TBX3 Macaca mulatta ENSMMUG00000015070 I 0.766
TBX2 Monodelphis domestica ENSMODG00000014204 I 0.766
ENSMPUG00000002720 Mustela putorius furo ENSMPUG00000002720 I 0.766
ENSMPUG00000015118 Mustela putorius furo ENSMPUG00000015118 I 0.766
Tbx2 Mus musculus ENSMUSG00000000093 D 0.766
Tbx3 Mus musculus ENSMUSG00000018604 D 0.766
ENSNLEG00000000224 Nomascus leucogenys ENSNLEG00000000224 I 0.766
ENSNLEG00000000423 Nomascus leucogenys ENSNLEG00000000423 I 0.766
TBX3 Ornithorhynchus anatinus ENSOANG00000007095 I 0.766
ENSOARG00000006249 Ovis aries ENSOARG00000006249 I 0.766
TBX3 Oryctolagus cuniculus ENSOCUG00000014595 I 0.766
TBX2 Otolemur garnettii ENSOGAG00000014815 I 0.766
TBX3 Otolemur garnettii ENSOGAG00000016212 I 0.766
TBX3 Ochotona princeps ENSOPRG00000004462 I 0.766
TBX2 Ochotona princeps ENSOPRG00000012183 I 0.766
ENSPANG00000008730 Papio anubis ENSPANG00000008730 I 0.766
ENSPPYG00000004995 Pongo abelii ENSPPYG00000004995 I 0.766
ENSPSIG00000017536 Pelodiscus sinensis ENSPSIG00000017536 I 0.766
TBX2 Pan troglodytes ENSPTRG00000009489 I 0.766
TBX3 Pan troglodytes ENSPTRG00000023749 I 0.766
Tbx3 Rattus norvegicus ENSRNOG00000008706 I 0.766
ENSSHAG00000004253 Sarcophilus harrisii ENSSHAG00000004253 I 0.766
ENSSHAG00000012290 Sarcophilus harrisii ENSSHAG00000012290 I 0.766
TBX3 Sus scrofa ENSSSCG00000009865 I 0.766
TBX2 Sus scrofa ENSSSCG00000027060 I 0.766
ENSSTOG00000009350 Ictidomys tridecemlineatus ENSSTOG00000009350 I 0.766
ENSSTOG00000009817 Ictidomys tridecemlineatus ENSSTOG00000009817 I 0.766
TBX3 Tupaia belangeri ENSTBEG00000014612 I 0.766
ENSTSYG00000008994 Tarsius syrichta ENSTSYG00000008994 I 0.766
TBX2 Tursiops truncatus ENSTTRG00000004541 I 0.766
Afo_R010397 Aptenodytes forsteri Afo_R010397 I 0.766
Alligator_sinensis_CCG002051.1 Alligator sinensis Alligator_sinensis_CCG002051.1 I 0.766
Alligator_sinensis_CCG008095.1 Alligator sinensis Alligator_sinensis_CCG008095.1 I 0.766
Cmyd_10018098 Chelonia mydas Cmyd_10018098 I 0.766
ENSBTAP00000028930-D1 Bos grunniens ENSBTAP00000028930-D1 I 0.766
ENSP00000257566 Macaca fascicularis ENSP00000257566 I 0.766
Myotis_brandtii_Tbx3_10028216 Myotis brandtii Myotis_brandtii_Tbx3_10028216 I 0.766
Ogr02099 Ophisaurus gracilis Ogr02099 I 0.766
Ogr11256 Ophisaurus gracilis Ogr11256 I 0.766
Pvit_16429 Pogona vitticeps Pvit_16429 I 0.766
AAI57537 Xenopus tropicalis AAI57537 I 0.766
tbx2 Xenopus tropicalis XB-GENE-1018115 I 0.766
tbx2.L Xenopus laevis XB-GENE-1018122 I 0.766
ENSGMOG00000012645 Gadus morhua ENSGMOG00000012645 I 0.765
fgenesh2_pg.scaffold_89000016 Branchiostoma floridae fgenesh2_pg.scaffold_89000016 I 0.765
L898_g10464 Steinernema monticolum L898_g10464 I 0.765
Gfo_R010838 Geospiza fortis Gfo_R010838 I 0.763
CapteG163410 Capitella teleta CapteG163410 I 0.762
Sakowv30012255m.g Saccoglossus kowalevskii Sakowv30012255m.g I 0.762
HNAJ_0001193901 Hymenolepis nana HNAJ_0001193901 I 0.759
ENSAMXG00000001528 Astyanax mexicanus ENSAMXG00000001528 I 0.757
tbx2b Danio rerio ENSDARG00000006120 I 0.757
ENSLACG00000015364 Latimeria chalumnae ENSLACG00000015364 I 0.757
tbx2b Tetraodon nigroviridis ENSTNIG00000010765 I 0.757
Pvit_13524 Pogona vitticeps Pvit_13524 I 0.757
tbx3 Xenopus tropicalis XB-GENE-1018231 I 0.757
tbx3.L Xenopus laevis XB-GENE-6252891 I 0.757
HelroG63904 Helobdella robusta HelroG63904 I 0.756
ENSCING00000008678 Ciona intestinalis ENSCING00000008678 I 0.754
ENSCSAVG00000009650 Ciona savignyi ENSCSAVG00000009650 I 0.754
TBX2 Equus caballus ENSECAG00000024480 I 0.754
TBX3 Monodelphis domestica ENSMODG00000012059 I 0.754
TBX2 Taeniopygia guttata ENSTGUG00000007813 I 0.753
Smp_145230 Schistosoma mansoni Smp_145230 I 0.749
tbx3b Danio rerio ENSDARG00000061509 I 0.748
CapteG152028 Capitella teleta CapteG152028 I 0.745
NEMVEDRAFT_v1g102530 Nematostella vectensis NEMVEDRAFT_v1g102530 I 0.745
tbx2b Gasterosteus aculeatus ENSGACG00000020309 I 0.744
TBX4 Meleagris gallopavo ENSMGAG00000007617 I 0.742
ENSXMAG00000000486 Xiphophorus maculatus ENSXMAG00000000486 I 0.741
SMU15026199 Schmidtea mediterranea SMU15026199 I 0.740
ENSONIG00000001919 Oreochromis niloticus ENSONIG00000001919 I 0.739
tbx2b Oryzias latipes ENSORLG00000010011 I 0.739
csin107221 Clonorchis sinensis csin107221 I 0.739
T265_05725 Opisthorchis viverrini T265_05725 I 0.739
TriadG59753 Trichoplax adhaerens TriadG59753 I 0.737
CapteG110717 Capitella teleta CapteG110717 I 0.735
TBX2 Gasterosteus aculeatus ENSGACG00000013575 D 0.735
ENSGMOG00000002896 Gadus morhua ENSGMOG00000002896 I 0.735
ENSGMOG00000009107 Gadus morhua ENSGMOG00000009107 I 0.735
ENSONIG00000010454 Oreochromis niloticus ENSONIG00000010454 I 0.735
TBX2 Oryzias latipes ENSORLG00000014792 I 0.735
ENSPFOG00000016384 Poecilia formosa ENSPFOG00000016384 I 0.735
TBX2 Takifugu rubripes ENSTRUG00000008297 D 0.735
ENSXMAG00000005715 Xiphophorus maculatus ENSXMAG00000005715 I 0.735