Pavir.Ib01526 (Panicum virgatum)
NAC/NAM

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF02365 (NAM) IPR003441 Pavir.Ib01526 T298906_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ANAC087
M07232_2.00 		Arabidopsis thaliana
TDNCKTSHNNNDYACGYHANB
VNTDRCGTRHNNNDSAMGNHA		 Dap-seq
OMalley et al.(2016)
ANAC087_colamp_a 		0.891 0.781
ANAC087
M07233_2.00 		Arabidopsis thaliana
TWNCKTGWNNNDCAMGYHA
TDRCKTGHNNNWCAMGNWA		 Dap-seq
OMalley et al.(2016)
ANAC087_col_v3a 		0.891 0.781
For this family, TFs with SR scores > 0.870 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.Ib01526.1.p NAC/NAM 21 146

Links

Other NAC/NAM family TFs
Other Panicum virgatum TFs

84 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ANAC087 Arabidopsis thaliana AT5G18270 D 0.891
Sb01g036590 Sorghum bicolor Sb01g036590 I 0.971
Pavir.Bb02033 Panicum virgatum Pavir.Bb02033 I 0.902
Pavir.Ba02955 Panicum virgatum Pavir.Ba02955 I 0.909
Lus10026879.g Linum usitatissimum Lus10026879.g I 0.871
Gorai.013G118000 Gossypium raimondii Gorai.013G118000 I 0.872
Gorai.007G267700 Gossypium raimondii Gorai.007G267700 I 0.884
OPUNC01G00320 Oryza punctata OPUNC01G00320 I 0.877
gene20686-v1.0-hybrid Fragaria vesca gene20686-v1.0-hybrid I 0.903
evm.TU.supercontig_594.1 Carica papaya evm.TU.supercontig_594.1 I 0.903
Eucgr.A02074 Eucalyptus grandis Eucgr.A02074 I 0.884
Carubv10001373m.g Capsella rubella Carubv10001373m.g I 0.893
OS01G0104500 Oryza sativa OS01G0104500 I 0.878
POPTR_0013s05110 Populus trichocarpa POPTR_0013s05110 I 0.872
PRUPE_ppa005770mg Prunus persica PRUPE_ppa005770mg I 0.873
Pavir.Eb00976 Panicum virgatum Pavir.Eb00976 I 0.881
Cagra.0906s0022 Capsella grandiflora Cagra.0906s0022 I 0.893
Bostr.26527s0381 Boechera stricta Bostr.26527s0381 I 0.895
TCM_026028 Theobroma cacao TCM_026028 I 0.884
Cucsa.002980 Cucumis sativus Cucsa.002980 I 0.888
cassava25877.m1 Manihot esculenta cassava25877.m1 I 0.889
TRAES3BF020100120CFD_g Triticum aestivum TRAES3BF020100120CFD_g I 0.871
Traes_4AS_B95A1C3A1 Triticum aestivum Traes_4AS_B95A1C3A1 I 0.962
Traes_4BL_B92B51F5D Triticum aestivum Traes_4BL_B92B51F5D I 0.964
Traes_4DL_D84567626 Triticum aestivum Traes_4DL_D84567626 I 0.963
29950.m001171 Ricinus communis 29950.m001171 I 0.878
Cla012339 Citrullus lanatus Cla012339 I 0.886
Ca_08255 Cicer arietinum Ca_08255 I 0.896
TRIUR3_35152 Triticum urartu TRIUR3_35152 I 0.962
VIT_08s0007g07640 Vitis vinifera VIT_08s0007g07640 I 0.872
GRMZM2G031001 Zea mays GRMZM2G031001 I 0.968
chr1.CM0104.260.nc Lotus japonicus chr1.CM0104.260.nc I 0.898
Bo2g015440 Brassica oleracea Bo2g015440 I 0.897
Bo3g013050 Brassica oleracea Bo3g013050 I 0.897
Bra006449 Brassica rapa Bra006449 I 0.897
Bra023669 Brassica rapa Bra023669 I 0.897
BRADI1G63630 Brachypodium distachyon BRADI1G63630 I 0.960
Thhalv10014060m.g Eutrema salsugineum Thhalv10014060m.g I 0.895
SapurV1A.2283s0010 Salix purpurea SapurV1A.2283s0010 I 0.876
F775_29256 Aegilops tauschii F775_29256 I 0.963
ANAC087 Arabidopsis lyrata fgenesh1_pm.C_scaffold_6001462 I 0.891
GLYMA02G07760 Glycine max GLYMA02G07760 I 0.879
GLYMA16G04720 Glycine max GLYMA16G04720 I 0.891
GLYMA16G26810 Glycine max GLYMA16G26810 I 0.879
GLYMA19G28515 Glycine max GLYMA19G28515 I 0.895
GRMZM2G159500 Zea mays GRMZM2G159500 I 0.970
GSMUA_Achr10G05070_001 Musa acuminata GSMUA_Achr10G05070_001 I 0.891
GSMUA_Achr3G09520_001 Musa acuminata GSMUA_Achr3G09520_001 I 0.915
GSMUA_Achr5G07600_001 Musa acuminata GSMUA_Achr5G07600_001 I 0.912
GSMUA_Achr6G08600_001 Musa acuminata GSMUA_Achr6G08600_001 I 0.895
GSMUA_Achr6G32290_001 Musa acuminata GSMUA_Achr6G32290_001 I 0.895
GSMUA_Achr8G21470_001 Musa acuminata GSMUA_Achr8G21470_001 I 0.902
GSMUA_Achr9G16920_001 Musa acuminata GSMUA_Achr9G16920_001 I 0.884
LPERR01G00270 Leersia perrieri LPERR01G00270 I 0.889
SapurV1A.1196s0010 Salix purpurea SapurV1A.1196s0010 I 0.874
SapurV1A.0867s0130 Salix purpurea SapurV1A.0867s0130 I 0.874
SapurV1A.0308s0280 Salix purpurea SapurV1A.0308s0280 I 0.876
Pavir.J13094 Panicum virgatum Pavir.J13094 I 0.969
OB01G10300 Oryza brachyantha OB01G10300 I 0.881
OS03G0327100 Oryza sativa OS03G0327100 N 0.939
OMERI03G14250 Oryza meridionalis OMERI03G14250 N 0.955
BGIOSGA010816 Oryza indica BGIOSGA010816 N 0.939
F775_15511 Aegilops tauschii F775_15511 N 0.888
F775_26964 Aegilops tauschii F775_26964 N 0.873
LPERR03G13930 Leersia perrieri LPERR03G13930 N 0.934
MLOC_5832 Hordeum vulgare MLOC_5832 N 0.881
MLOC_64057 Hordeum vulgare MLOC_64057 N 0.963
MLOC_65400 Hordeum vulgare MLOC_65400 N 0.888
OB07G32150 Oryza brachyantha OB07G32150 N 0.875
OBART03G15920 Oryza barthii OBART03G15920 N 0.939
OGLUM03G16080 Oryza glumaepatula OGLUM03G16080 N 0.939
OLONG_022063 Oryza longistaminata OLONG_022063 N 0.939
TRIUR3_20284 Triticum urartu TRIUR3_20284 N 0.888
ONIVA03G16900 Oryza nivara ONIVA03G16900 N 0.939
OPUNC03G15440 Oryza punctata OPUNC03G15440 N 0.961
OPUNC07G25090 Oryza punctata OPUNC07G25090 N 0.873
ORGLA03G0152400 Oryza glaberrima ORGLA03G0152400 N 0.939
ORUFI03G16480 Oryza rufipogon ORUFI03G16480 N 0.939
Sb02g043270 Sorghum bicolor Sb02g043270 N 0.881
Si035639m.g Setaria italica Si035639m.g N 0.964
Traes_2AS_7AAACC26B Triticum aestivum Traes_2AS_7AAACC26B N 0.888
Traes_2BS_00566A85C Triticum aestivum Traes_2BS_00566A85C N 0.888
Traes_5BL_420974D47 Triticum aestivum Traes_5BL_420974D47 N 0.881
TRIUR3_14541 Triticum urartu TRIUR3_14541 N 0.890