DAPPUDRAFT_290668 (Daphnia pulex)
Nuclear receptor

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00105 (zf-C4) IPR001628 DAPPUDRAFT_290668 T302331_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AGAP010438
M02389_2.00 		Anopheles gambiae
NRGDKCRNN
NNYGMHCYN		 PBM
Weirauch et al.(2014)
pTH6429 		0.985 0.900
kni
M06557_2.00 		Drosophila melanogaster
AAWNTAGRGCAV
BTGCYCTANWTT		 B1H
Mathelier et al.(2014)
MA0451.1 		0.984 0.857
kni
M06419_2.00 		Drosophila melanogaster
RAWNKVGNWC
GWNCBMNWTY		 B1H
Zhu et al.(2011)
kni_FlyReg_FBgn0001320 		0.984 0.857
kni
M06420_2.00 		Drosophila melanogaster
AAWNTAGRGCAV
BTGCYCTANWTT		 B1H
Zhu et al.(2011)
kni_NAR_FBgn0001320 		0.984 0.857
kni
M06421_2.00 		Drosophila melanogaster
RWAANTRGRNCA
TGNYCYANTTWY		 B1H
Zhu et al.(2011)
kni_SANGER_5_FBgn0001320 		0.984 0.857
kni
M08225_2.00 		Drosophila melanogaster
YAGNGYTGYC
GRCARCNCTR		 ChIP-seq
Contrino et al.(2012)
Mf24 		0.984 0.857
kni
M09687_2.00 		Drosophila melanogaster
NAAWNKRGADCAV
BTGHTCYMNWTTN		 Misc
Kulakovskiy et al.(2009)
kni 		0.984 0.857
kni
M11189_2.00 		Drosophila melanogaster Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
I$KNI_Q6 		0.984 0.857
knrl
M03930_2.00 		Drosophila melanogaster
AWNTRGRKCAN
NTGMYCYANWT		 SELEX
Nitta et al.(2015)
knrl_1 		0.983 0.871
knrl
M03931_2.00 		Drosophila melanogaster
AWBBGTAACR
YGTTACVVWT		 SELEX
Nitta et al.(2015)
knrl_2 		0.983 0.871
knrl
M06422_2.00 		Drosophila melanogaster
AAABTRGRKCA
TGMYCYAVTTT		 B1H
Zhu et al.(2011)
knrl_SANGER_5_FBgn0001323 		0.983 0.871
eg
M03927_2.00 		Drosophila melanogaster
NAAAYTRGAKCA
TGMTCYARTTTN		 SELEX
Nitta et al.(2015)
eg_1 		0.964 0.857
eg
M06415_2.00 		Drosophila melanogaster
RAAANTAGRGCAV
BTGCYCTANTTTY		 B1H
Zhu et al.(2011)
eg_SANGER_5_FBgn0000560 		0.964 0.857
For this family, TFs with SR scores > 0.745 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
EFX76947 Nuclear receptor 3 73

Links

Other Nuclear receptor family TFs
Other Daphnia pulex TFs

93 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
evm.TU.supercontig_145.1 Carica papaya evm.TU.supercontig_145.1 N 0.000
cassava14439.m1 Manihot esculenta cassava14439.m1 N 0.000
cassava17724.valid.m1 Manihot esculenta cassava17724.valid.m1 N 0.000
Cucsa.120560 Cucumis sativus Cucsa.120560 N 0.000
Aquca_013_00703 Aquilegia coerulea Aquca_013_00703 N 0.000
Bostr.13158s0066 Boechera stricta Bostr.13158s0066 N 0.000
Cagra.6011s0013 Capsella grandiflora Cagra.6011s0013 N 0.000
Carubv10019494m.g Capsella rubella Carubv10019494m.g N 0.000
Eucgr.E00457 Eucalyptus grandis Eucgr.E00457 N 0.000
Eucgr.E01501 Eucalyptus grandis Eucgr.E01501 N 0.000
30174.m008836 Ricinus communis 30174.m008836 N 0.000
Gorai.001G174900 Gossypium raimondii Gorai.001G174900 N 0.000
Gorai.007G089600 Gossypium raimondii Gorai.007G089600 N 0.000
Gorai.008G237000 Gossypium raimondii Gorai.008G237000 N 0.000
SapurV1A.0033s0510 Salix purpurea SapurV1A.0033s0510 N 0.000
SapurV1A.0104s0310 Salix purpurea SapurV1A.0104s0310 N 0.000
SapurV1A.0382s0270 Salix purpurea SapurV1A.0382s0270 N 0.000
Thhalv10006374m.g Eutrema salsugineum Thhalv10006374m.g N 0.000
PK01122.1 Cannabis sativa PK01122.1 N 0.000
LjSGA_033751.1 Lotus japonicus LjSGA_033751.1 N 0.000
POPTR_0014s05840 Populus trichocarpa POPTR_0014s05840 N 0.000
AT3G60670 Arabidopsis thaliana AT3G60670 N 0.000
Bo4g104880 Brassica oleracea Bo4g104880 N 0.000
Bo8g095360 Brassica oleracea Bo8g095360 N 0.000
Bra007550 Brassica rapa Bra007550 N 0.000
Bra014478 Brassica rapa Bra014478 N 0.000
fgenesh2_kg.5__2532__AT3G60670.1 Arabidopsis lyrata fgenesh2_kg.5__2532__AT3G60670.1 N 0.000
GLYMA01G17580 Glycine max GLYMA01G17580 N 0.000
GLYMA11G17770 Glycine max GLYMA11G17770 N 0.000
GSMUA_Achr11G04210_001 Musa acuminata GSMUA_Achr11G04210_001 N 0.000
AMTR_s00059p00116150 Amborella trichopoda AMTR_s00059p00116150 N 0.000
PRUPE_ppa023785mg Prunus persica PRUPE_ppa023785mg N 0.000
Solyc01g091000.2 Solanum lycopersicum Solyc01g091000.2 N 0.000
TCM_005554 Theobroma cacao TCM_005554 N 0.000
TCM_016018 Theobroma cacao TCM_016018 N 0.000
VIT_00s0233g00100 Vitis vinifera VIT_00s0233g00100 N 0.000
VIT_02s0154g00150 Vitis vinifera VIT_02s0154g00150 N 0.000
VIT_15s0048g00580 Vitis vinifera VIT_15s0048g00580 N 0.000
Cla006768 Citrullus lanatus Cla006768 N 0.000
Pm017841 Prunus mume Pm017841 N 0.000