SMU15013099 (Schmidtea mediterranea)
Nuclear receptor

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00105 (zf-C4) IPR001628 SMU15013099 T307187_2.00 Misc (2018-Jan-19)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
nhr-25
M08226_2.00 		Caenorhabditis elegans
MAAGGTCA
TGACCTTK		 ChIP-seq
Contrino et al.(2012)
Mw160 		0.912 0.571
ftz-f1
M02407_2.00 		Drosophila melanogaster
RRGGTCAH
DTGACCYY		 PBM
Weirauch et al.(2014)
pTH5709 		0.876 0.600
ftz-f1
M06417_2.00 		Drosophila melanogaster
MMRKYYSAAGGWCRCYGM
KCRGYGWCCTTSRRMYKK		 B1H
Zhu et al.(2011)
ftz-f1_FlyReg_FBgn0001078 		0.876 0.600
ftz-f1
M06418_2.00 		Drosophila melanogaster
AAGGTCA
TGACCTT		 B1H
Zhu et al.(2011)
ftz-f1_SANGER_5_FBgn0001078 		0.876 0.600
Hr39
M03942_2.00 		Drosophila melanogaster
CAAGGHCRN
NYGDCCTTG		 SELEX
Nitta et al.(2015)
Hr39_1 		0.870 0.643
Hr39
M03943_2.00 		Drosophila melanogaster
CAAGGYCRH
DYGRCCTTG		 SELEX
Nitta et al.(2015)
Hr39_2 		0.870 0.643
NR5A1
M05613_2.00 		Homo sapiens
NNCAAGGYCRN
NYGRCCTTGNN		 SELEX
Yin et al.(2017)
NR5A1_FL_HT-SELEX 		0.867 0.614
Nr5a1
M09322_2.00 		Mus musculus
NBYCAAGGYCA
TGRCCTTGRVN		 Misc
Kulakovskiy et al.(2013)
STF1_MOUSE.H11MO.0.B 		0.867 0.614
NR5A1
M11142_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SF1_Q5_01 		0.867 0.614
NR5A1
M11143_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SF1_Q5 		0.867 0.614
NR5A1
M11144_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SF1_Q6_01 		0.867 0.614
NR5A1
M11145_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SF1_Q6 		0.867 0.614
NR5A1
M05614_2.00 		Homo sapiens
NNSAAGGHCRN
NYGDCCTTSNN		 SELEX
Yin et al.(2017)
NR5A1_FL_Methyl-HT-SELEX 		0.867 0.614
NR5A2
M05589_2.00 		Homo sapiens
YCAAGGYCRYGRCCTTSR
YSAAGGYCRYGRCCTTGR		 SELEX
Yin et al.(2017)
NR5A2_eDBD_HT-SELEX_1 		0.851 0.586
NR5A2
M05590_2.00 		Homo sapiens
NYCAAGGTCAH
DTGACCTTGRN		 SELEX
Yin et al.(2017)
NR5A2_eDBD_HT-SELEX_2 		0.851 0.586
NR5A2
M05591_2.00 		Homo sapiens
YGRCCTTSVNYSAAGGYCR
YGRCCTTSRNBSAAGGYCR		 SELEX
Yin et al.(2017)
NR5A2_eDBD_HT-SELEX_3 		0.851 0.586
NR5A2
M09271_2.00 		Homo sapiens
NBYCAAGGYCA
TGRCCTTGRVN		 Misc
Kulakovskiy et al.(2013)
NR5A2_HUMAN.H11MO.0.B 		0.851 0.586
NR5A2
M11126_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$LRH1_Q5_01 		0.851 0.586
NR5A2
M11127_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$LRH1_Q5 		0.851 0.586
NR5A2
M11128_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$LRH1_Q6 		0.851 0.586
NR5A2
M05592_2.00 		Homo sapiens
YCAAGGYCRYGACCTTSR
YSAAGGTCRYGRCCTTGR		 SELEX
Yin et al.(2017)
NR5A2_eDBD_Methyl-HT-SELEX_1 		0.851 0.586
NR5A2
M05593_2.00 		Homo sapiens
NYCAAGGTCRH
DYGACCTTGRN		 SELEX
Yin et al.(2017)
NR5A2_eDBD_Methyl-HT-SELEX_2 		0.851 0.586
NR5A2
M05594_2.00 		Homo sapiens
YGRCCTTSVNBSAAGGYCR
YGRCCTTSVNBSAAGGYCR		 SELEX
Yin et al.(2017)
NR5A2_eDBD_Methyl-HT-SELEX_3 		0.851 0.586
Nr5a2
M00816_2.00 		Mus musculus
VAAGGTCR
YGACCTTB		 PBM
Weirauch et al.(2013)
pTH3468 		0.833 0.600
Nr5a2
M08158_2.00 		Mus musculus
VRDBTCAAGGYCANN
NNTGRCCTTGAVHYB		 ChIP-seq
Mathelier et al.(2014)
MA0505.1 		0.833 0.600
Nr5a2
M09320_2.00 		Mus musculus
NBYCAAGGYCA
TGRCCTTGRVN		 Misc
Kulakovskiy et al.(2013)
NR5A2_MOUSE.H11MO.0.A 		0.833 0.600
Nr5a2
M09616_2.00 		Mus musculus
BYCAAGGYCA
TGRCCTTGRV		 Misc
Heinz et al.(2010)
Pancreas-LRH1_GSE34295 		0.833 0.600
Nr5a2
M09615_2.00 		Mus musculus
BYCAAGGYCA
TGRCCTTGRV		 Misc
Heinz et al.(2010)
mES-Nr5a2_GSE19019 		0.833 0.600
For this family, TFs with SR scores > 0.745 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
SMU15013099 Nuclear receptor 305 378

Links

Other Nuclear receptor family TFs
Other Schmidtea mediterranea TFs

337 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
GT-1 Arabidopsis lyrata scaffold_101505.1 D
MTR_3g085960 Medicago truncatula MTR_3g085960 D
MDP0000164819 Malus domestica MDP0000164819 D
VIT_17s0000g10420 Vitis vinifera VIT_17s0000g10420 D
OS04G0486400 Oryza sativa OS04G0486400 D
GLYMA11G37390 Glycine max GLYMA11G37390 D
fgenesh2_kg.5__353__AT3G25990.1 Arabidopsis lyrata fgenesh2_kg.5__353__AT3G25990.1 D
29929.m004704 Ricinus communis 29929.m004704 D
PK20543.1 Cannabis sativa PK20543.1 D
cassava13991.valid.m1 Manihot esculenta cassava13991.valid.m1 D
GT-4 Arabidopsis thaliana AT3G25990 D
GT-1 Arabidopsis thaliana AT1G13450 D
Eucgr.B03456 Eucalyptus grandis Eucgr.B03456 I
Eucgr.J02286 Eucalyptus grandis Eucgr.J02286 I
Ciclev10031750m.g Citrus clementina Ciclev10031750m.g I
Carubv10017413m.g Capsella rubella Carubv10017413m.g I
Cagra.3501s0157 Capsella grandiflora Cagra.3501s0157 I
Carubv10009313m.g Capsella rubella Carubv10009313m.g I
Cagra.6197s0012 Capsella grandiflora Cagra.6197s0012 I
Lus10015824.g Linum usitatissimum Lus10015824.g I
Bostr.13671s0104 Boechera stricta Bostr.13671s0104 I
Bostr.0556s0275 Boechera stricta Bostr.0556s0275 I
Aquca_123_00031 Aquilegia coerulea Aquca_123_00031 I
Aquca_011_00297 Aquilegia coerulea Aquca_011_00297 I
evm.TU.supercontig_130.35 Carica papaya evm.TU.supercontig_130.35 I
evm.TU.supercontig_1453.1 Carica papaya evm.TU.supercontig_1453.1 I
Gorai.008G163200 Gossypium raimondii Gorai.008G163200 I
Gorai.009G333800 Gossypium raimondii Gorai.009G333800 I
Pm016214 Prunus mume Pm016214 I
Lus10036978.g Linum usitatissimum Lus10036978.g I
MDP0000275412 Malus domestica MDP0000275412 I
orange1.1g015940m.g Citrus sinensis orange1.1g015940m.g I
Pavir.Ga01561 Panicum virgatum Pavir.Ga01561 I
SapurV1A.0206s0170 Salix purpurea SapurV1A.0206s0170 I
SapurV1A.1719s0020 Salix purpurea SapurV1A.1719s0020 I
Thhalv10004359m.g Eutrema salsugineum Thhalv10004359m.g I
Thhalv10007959m.g Eutrema salsugineum Thhalv10007959m.g I
LjT04G17.70.nc Lotus japonicus LjT04G17.70.nc I
PDK_20s1345831g002 Phoenix dactylifera PDK_20s1345831g002 I
PRUPE_ppa005942mg Prunus persica PRUPE_ppa005942mg I
AMTR_s00055p00209070 Amborella trichopoda AMTR_s00055p00209070 I
Bo2g138840 Brassica oleracea Bo2g138840 I
Bo5g017510 Brassica oleracea Bo5g017510 I
Bo8g107400 Brassica oleracea Bo8g107400 I
Bra019721 Brassica rapa Bra019721 I
Bra036354 Brassica rapa Bra036354 I
GLYMA18G01360 Glycine max GLYMA18G01360 I
GRMZM2G047370 Zea mays GRMZM2G047370 I
GSMUA_Achr3G19370_001 Musa acuminata GSMUA_Achr3G19370_001 I
GSMUA_Achr5G17240_001 Musa acuminata GSMUA_Achr5G17240_001 I
MLOC_64014 Hordeum vulgare MLOC_64014 I
OB04G23970 Oryza brachyantha OB04G23970 I
POPTR_0008s17980 Populus trichocarpa POPTR_0008s17980 I
POPTR_0010s06510 Populus trichocarpa POPTR_0010s06510 I
mgf016368m Mimulus guttatus mgf016368m I
PRUPE_ppa009404mg Prunus persica PRUPE_ppa009404mg I
Si010147m.g Setaria italica Si010147m.g I
Si036121m.g Setaria italica Si036121m.g I
Solyc12g077540.1 Solanum lycopersicum Solyc12g077540.1 I
TCM_010751 Theobroma cacao TCM_010751 I
VIT_01s0010g02420 Vitis vinifera VIT_01s0010g02420 I
VIT_14s0171g00450 Vitis vinifera VIT_14s0171g00450 I
Ca_11315 Cicer arietinum Ca_11315 I
Cla023054 Citrullus lanatus Cla023054 I
Pm006885 Prunus mume Pm006885 I
AMTR_s00005p00185670 Amborella trichopoda AMTR_s00005p00185670 I
cassava11841.valid.m1 Manihot esculenta cassava11841.valid.m1 I
Cucsa.394820 Cucumis sativus Cucsa.394820 I