Bm1956 (Brugia malayi)
Paired box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00292 (PAX) IPR001523 Bm1956 T311443_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Pax5B
M01301_2.00 		Gallus gallus
NSNDTNNNN
NNNNAHNSN		 PBM
Lambert et al.(2019)
pTH9781 		0.864 0.864
PAX5
M03443_2.00 		Homo sapiens
RNBYANYSAWSCGTRACN
NGTYACGSWTSRNTRVNY		 SELEX
Jolma et al.(2013)
PAX5_1 		0.864 0.864
PAX5
M08160_2.00 		Homo sapiens
RDGCGTGACCNN
NNGGTCACGCHY		 ChIP-seq
Mathelier et al.(2014)
MA0014.3 		0.864 0.864
PAX5
M07995_2.00 		Homo sapiens
BCAVYSRDSCRKRRC
GYYMYGSHYSRBTGV		 ChIP-seq
Gerstein et al.(2012)
GM12878_PAX5C20_HudsonAlpha 		0.864 0.864
PAX5
M07996_2.00 		Homo sapiens
BCASYSRDSCRTRAC
GTYAYGSHYSRSTGV		 ChIP-seq
Gerstein et al.(2012)
GM12878_PAX5N19_HudsonAlpha 		0.864 0.864
PAX5
M07997_2.00 		Homo sapiens
CASYSRDSCRKRACN
NGTYMYGSHYSRSTG		 ChIP-seq
Gerstein et al.(2012)
GM12891_PAX5C20_HudsonAlpha 		0.864 0.864
PAX5
M07998_2.00 		Homo sapiens
BCASYSRDSCGKRRC
GYYMCGSHYSRSTGV		 ChIP-seq
Gerstein et al.(2012)
GM12892_PAX5C20_HudsonAlpha 		0.864 0.864
PAX5
M08227_2.00 		Homo sapiens
BCANYSRDGCGTRAM
KTYACGCHYSRNTGV		 ChIP-seq
Contrino et al.(2012)
Mv108 		0.864 0.864
PAX5
M08228_2.00 		Homo sapiens
AGCGTGRCYG
CRGYCACGCT		 ChIP-seq
Contrino et al.(2012)
Mv109 		0.864 0.864
PAX5
M09341_2.00 		Homo sapiens
SNVDGNKCARCVRAGCRDGAC
GTCHYGCTYBGYTGMNCHBNS		 Misc
Kulakovskiy et al.(2013)
PAX5_HUMAN.H11MO.0.A 		0.864 0.864
Pax5
M09342_2.00 		Mus musculus
VDRNBCAVYVRDSCRKRRM
KYYMYGSHYBRBTGVNYHB		 Misc
Kulakovskiy et al.(2013)
PAX5_MOUSE.H11MO.0.A 		0.864 0.864
PAX5
M09622_2.00 		Homo sapiens
BCASYSRDSCRTGRMN
NKYCAYGSHYSRSTGV		 Misc
Heinz et al.(2010)
GM12878-PAX5_GSE32465_1 		0.864 0.864
PAX5
M09623_2.00 		Homo sapiens
BCABNVRSCGTGAC
GTCACGSYBNVTGV		 Misc
Heinz et al.(2010)
GM12878-PAX5_GSE32465_2 		0.864 0.864
PAX5
M11208_2.00 		Homo sapiens
BCNNNRNKCANBGNWGNRKRGMSRSHNB
VNDSYSKCYMYNCWNCVNTGMNYNNNGV		 Transfac
Matys et al.(2006)
V$PAX5_01 		0.864 0.864
PAX5
M11209_2.00 		Homo sapiens
VRHVDGDNDBBTNRAGCGKRACVRYNVH
DBNRYBGTYMCGCTYNAVVHNHCHBDYB		 Transfac
Matys et al.(2006)
V$PAX5_02 		0.864 0.864
PAX5
M11210_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$PAX5_06 		0.864 0.864
PAX5
M11211_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$PAX5_07 		0.864 0.864
PAX5
M11212_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$PAX5_Q6 		0.864 0.864
pax2b
M02425_2.00 		Danio rerio
HVNYSRNSCR
YGSNYSRNBD		 PBM
Weirauch et al.(2014)
pTH8679 		0.848 0.848
pax2
M02428_2.00 		Xenopus tropicalis
NNNRNBCRNN
NNYGVNYNNN		 PBM
Weirauch et al.(2014)
pTH8556 		0.848 0.848
pax-2
M00706_2.00 		Caenorhabditis elegans
RMSCRTRACS
SGTYAYGSKY		 PBM
Narasimhan et al.(2015)
pTH10794 		0.824 0.824
PAX8
M05685_2.00 		Homo sapiens
NRNBYRNYSRWGCGTGACSN
NSGTCACGCWYSRNYRVNYN		 SELEX
Yin et al.(2017)
PAX8_FL_HT-SELEX 		0.824 0.824
Pax8
M09624_2.00 		Rattus norvegicus
BCAGBCADSCRKGVM
KBCMYGSHTGVCTGV		 Misc
Heinz et al.(2010)
Thyroid-Pax8_GSE26938 		0.824 0.824
PAX8
M11205_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$PAX8_01 		0.824 0.824
PAX8
M11206_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$PAX8_B 		0.824 0.824
PAX8
M05686_2.00 		Homo sapiens
NRNBCRNTSAWSCGYGACNN
NNGTCRCGSWTSANYGVNYN		 SELEX
Yin et al.(2017)
PAX8_FL_Methyl-HT-SELEX 		0.824 0.824
sv
M01302_2.00 		Drosophila melanogaster
NNNSCRBRDM
KHYVYGSNNN		 PBM
Lambert et al.(2019)
pTH9773 		0.816 0.816
sv
M03949_2.00 		Drosophila melanogaster
NBCRNYSAWGCGTGACS
SGTCACGCWTSRNYGVN		 SELEX
Nitta et al.(2015)
sv_1 		0.816 0.816
sv
M06438_2.00 		Drosophila melanogaster
RNYSRDSCGTRACNN
NNGTYACGSHYSRNY		 B1H
Zhu et al.(2011)
sv_SOLEXA_5_FBgn0005561 		0.816 0.816
egl-38
M02426_2.00 		Caenorhabditis elegans
ACCGTGAYCAC
GTGRTCACGGT		 PBM
Weirauch et al.(2014)
pTH8981 		0.808 0.808
Poxn
M03946_2.00 		Drosophila melanogaster
DGCGTGACSGTCACGSY
RSCGTGACSGTCACGCH		 SELEX
Nitta et al.(2015)
Poxn_1 		0.736 0.736
Poxn
M03947_2.00 		Drosophila melanogaster
RSCGKGACSGTTMCGSW
WSCGKAACSGTCMCGSY		 SELEX
Nitta et al.(2015)
Poxn_2 		0.736 0.736
Poxn
M03948_2.00 		Drosophila melanogaster
NCGTTCCGGAACGD
HCGTTCCGGAACGN		 SELEX
Nitta et al.(2015)
Poxn_3 		0.736 0.736
Poxn
M06437_2.00 		Drosophila melanogaster
RSCGTGACG
CGTCACGSY		 B1H
Zhu et al.(2011)
Poxn_SOLEXA_5_FBgn0003130 		0.736 0.736
PAX1
M03442_2.00 		Homo sapiens
DBCANTSAWGCGTGACS
SGTCACGCWTSANTGVH		 SELEX
Jolma et al.(2013)
PAX1_1 		0.720 0.720
PAX9
M03444_2.00 		Homo sapiens
NKCANTSAWGCGTGACS
SGTCACGCWTSANTGMN		 SELEX
Jolma et al.(2013)
PAX9_1 		0.720 0.720
PAX1
M05687_2.00 		Homo sapiens
BCRNTSRWGCGTGACSN
NSGTCACGCWYSANYGV		 SELEX
Yin et al.(2017)
PAX1_eDBD_HT-SELEX 		0.720 0.720
PAX9
M05689_2.00 		Homo sapiens
BHRNYSRDSCGTRACSN
NSGTYACGSHYSRNYDV		 SELEX
Yin et al.(2017)
PAX9_eDBD_HT-SELEX 		0.720 0.720
PAX1
M11207_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$PAX1_B 		0.720 0.720
PAX1
M05688_2.00 		Homo sapiens
BCRNTSAWGCGTGACSN
NSGTCACGCWTSANYGV		 SELEX
Yin et al.(2017)
PAX1_eDBD_Methyl-HT-SELEX 		0.720 0.720
PAX9
M05690_2.00 		Homo sapiens
BCRNTSAWSCGYGACNN
NNGTCRCGSWTSANYGV		 SELEX
Yin et al.(2017)
PAX9_eDBD_Methyl-HT-SELEX 		0.720 0.720
Poxm
M03944_2.00 		Drosophila melanogaster
CAVTCAWGCGTGACR
YGTCACGCWTGABTG		 SELEX
Nitta et al.(2015)
Poxm_1 		0.712 0.712
Poxm
M03945_2.00 		Drosophila melanogaster
NYSAWGCRTRACS
SGTYAYGCWTSRN		 SELEX
Nitta et al.(2015)
Poxm_2 		0.712 0.712
Poxm
M06436_2.00 		Drosophila melanogaster
NNNNNNMVNHNRNSCRTGA
TCAYGSNYNDNBKNNNNNN		 B1H
Zhu et al.(2011)
Poxm_SOLEXA_5_FBgn0003129 		0.712 0.712
pax9
M11204_2.00 		Danio rerio Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$PAX9_B 		0.712 0.712
PAX7
M00346_2.00 		Homo sapiens
NGTYAYGSHN
NDSCRTRACN		 PBM
Barrera et al.(2016)
PAX7_REF 		0.704 0.704
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bm1956d Paired box 49 173

Links

Other Paired box family TFs
Other Brugia malayi TFs

584 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AMTR_s00022p00190540 Amborella trichopoda AMTR_s00022p00190540 I 0.000
AMTR_s00025p00224230 Amborella trichopoda AMTR_s00025p00224230 I 0.000
BGIOSGA014151 Oryza indica BGIOSGA014151 I 0.000
Bo9g175820 Brassica oleracea Bo9g175820 I 0.000
Bra009228 Brassica rapa Bra009228 I 0.000
BRADI5G25320 Brachypodium distachyon BRADI5G25320 I 0.000
GLYMA03G29940 Glycine max GLYMA03G29940 I 0.000
GLYMA18G43130 Glycine max GLYMA18G43130 I 0.000
GLYMA19G32850 Glycine max GLYMA19G32850 I 0.000
GRMZM2G124495 Zea mays GRMZM2G124495 I 0.000
GSMUA_Achr4G19300_001 Musa acuminata GSMUA_Achr4G19300_001 I 0.000
GSMUA_Achr7G06370_001 Musa acuminata GSMUA_Achr7G06370_001 I 0.000
LPERR04G24240 Leersia perrieri LPERR04G24240 I 0.000
MLOC_52271 Hordeum vulgare MLOC_52271 I 0.000
OB04G35670 Oryza brachyantha OB04G35670 I 0.000
OBART04G28680 Oryza barthii OBART04G28680 I 0.000
OGLUM04G28560 Oryza glumaepatula OGLUM04G28560 I 0.000
OLONG_005000 Oryza longistaminata OLONG_005000 I 0.000
OMERI04G24260 Oryza meridionalis OMERI04G24260 I 0.000
ONIVA04G27220 Oryza nivara ONIVA04G27220 I 0.000
OPUNC04G26200 Oryza punctata OPUNC04G26200 I 0.000
ORGLA04G0249600 Oryza glaberrima ORGLA04G0249600 I 0.000
ORUFI04G30350 Oryza rufipogon ORUFI04G30350 I 0.000
OS04G0665600 Oryza sativa OS04G0665600 I 0.000
Sb05g000480 Sorghum bicolor Sb05g000480 I 0.000
Sb06g031970 Sorghum bicolor Sb06g031970 I 0.000
SELMODRAFT_414222 Selaginella moellendorffii SELMODRAFT_414222 I 0.000
SELMODRAFT_422768 Selaginella moellendorffii SELMODRAFT_422768 I 0.000
SELMODRAFT_426960 Selaginella moellendorffii SELMODRAFT_426960 I 0.000
SELMODRAFT_438636 Selaginella moellendorffii SELMODRAFT_438636 I 0.000
Si022099m.g Setaria italica Si022099m.g I 0.000
Solyc02g080860.1 Solanum lycopersicum Solyc02g080860.1 I 0.000
VIT_08s0007g06180 Vitis vinifera VIT_08s0007g06180 I 0.000
VIT_08s0007g06310 Vitis vinifera VIT_08s0007g06310 I 0.000
VIT_13s0067g01500 Vitis vinifera VIT_13s0067g01500 I 0.000
VIT_13s0156g00390 Vitis vinifera VIT_13s0156g00390 I 0.000
Ca_07304 Cicer arietinum Ca_07304 I 0.000
cassava16780.m1 Manihot esculenta cassava16780.m1 I 0.000
estExt_fgenesh1_pg.C_1660037 Physcomitrella patens estExt_fgenesh1_pg.C_1660037 I 0.000
estExt_fgenesh1_pg.C_550102 Physcomitrella patens estExt_fgenesh1_pg.C_550102 I 0.000
est_orfs.1_306_4269596:1 Micromonas pusilla est_orfs.1_306_4269596:1 I 0.000
fgenesh2_pg.scaffold_82000058 Physcomitrella patens fgenesh2_pg.scaffold_82000058 I 0.000
Aquca_004_00369 Aquilegia coerulea Aquca_004_00369 I 0.000
Ciclev10004984m.g Citrus clementina Ciclev10004984m.g I 0.000
Ciclev10015819m.g Citrus clementina Ciclev10015819m.g I 0.000
Gorai.009G329400 Gossypium raimondii Gorai.009G329400 I 0.000
Lus10022886.g Linum usitatissimum Lus10022886.g I 0.000
MDP0000142146 Malus domestica MDP0000142146 I 0.000
MDP0000182154 Malus domestica MDP0000182154 I 0.000
orange1.1g014308m.g Citrus sinensis orange1.1g014308m.g I 0.000
orange1.1g038268m.g Citrus sinensis orange1.1g038268m.g I 0.000
Pavir.Ga00160 Panicum virgatum Pavir.Ga00160 I 0.000
Pavir.J05593 Panicum virgatum Pavir.J05593 I 0.000
chr1.LjB18K24.110.nd Lotus japonicus chr1.LjB18K24.110.nd I 0.000
chr5.LjT42I01.50.nd Lotus japonicus chr5.LjT42I01.50.nd I 0.000
AT5G06800 Arabidopsis thaliana AT5G06800 N 0.000
Bo2g007410 Brassica oleracea Bo2g007410 N 0.000
Bo3g004040 Brassica oleracea Bo3g004040 N 0.000
Bra005912 Brassica rapa Bra005912 N 0.000
Bra028717 Brassica rapa Bra028717 N 0.000
fgenesh2_kg.6__627__AT5G06800.1 Arabidopsis lyrata fgenesh2_kg.6__627__AT5G06800.1 N 0.000
GLYMA02G30800 Glycine max GLYMA02G30800 N 0.000
GLYMA09G17404 Glycine max GLYMA09G17404 N 0.000
MTR_1g053835 Medicago truncatula MTR_1g053835 N 0.000
MTR_7g068600 Medicago truncatula MTR_7g068600 N 0.000
MTR_7g093030 Medicago truncatula MTR_7g093030 N 0.000
PGSC0003DMG400011435 Solanum tuberosum PGSC0003DMG400011435 N 0.000
PGSC0003DMG400023674 Solanum tuberosum PGSC0003DMG400023674 N 0.000
POPTR_0001s23560 Populus trichocarpa POPTR_0001s23560 N 0.000
POPTR_0006s20540 Populus trichocarpa POPTR_0006s20540 N 0.000
POPTR_0016s04830 Populus trichocarpa POPTR_0016s04830 N 0.000
PRUPE_ppa016067mg Prunus persica PRUPE_ppa016067mg N 0.000
Solyc10g078720.1 Solanum lycopersicum Solyc10g078720.1 N 0.000
Solyc10g080460.1 Solanum lycopersicum Solyc10g080460.1 N 0.000
TCM_024886 Theobroma cacao TCM_024886 N 0.000
Ca_14198 Cicer arietinum Ca_14198 N 0.000
Cla011853 Citrullus lanatus Cla011853 N 0.000
Pm025973 Prunus mume Pm025973 N 0.000
28582.m000316 Ricinus communis 28582.m000316 N 0.000
28582.m000317 Ricinus communis 28582.m000317 N 0.000
28582.m000318 Ricinus communis 28582.m000318 N 0.000
30226.m001993 Ricinus communis 30226.m001993 N 0.000
cassava12253.valid.m1 Manihot esculenta cassava12253.valid.m1 N 0.000
cassava12254.valid.m1 Manihot esculenta cassava12254.valid.m1 N 0.000
cassava12255.valid.m1 Manihot esculenta cassava12255.valid.m1 N 0.000
cassava39743.m1 Manihot esculenta cassava39743.m1 N 0.000
Cucsa.353890 Cucumis sativus Cucsa.353890 N 0.000
mgf007532m Mimulus guttatus mgf007532m N 0.000
mgf007985m Mimulus guttatus mgf007985m N 0.000
mgf015795m Mimulus guttatus mgf015795m N 0.000
mgf017208m Mimulus guttatus mgf017208m N 0.000
Aquca_009_00165 Aquilegia coerulea Aquca_009_00165 N 0.000
Aquca_012_00204 Aquilegia coerulea Aquca_012_00204 N 0.000
Bostr.13129s0292 Boechera stricta Bostr.13129s0292 N 0.000
Cagra.8005s0016 Capsella grandiflora Cagra.8005s0016 N 0.000
Carubv10003217m.g Capsella rubella Carubv10003217m.g N 0.000
Ciclev10012014m.g Citrus clementina Ciclev10012014m.g N 0.000
Ciclev10033388m.g Citrus clementina Ciclev10033388m.g N 0.000
Eucgr.A02444 Eucalyptus grandis Eucgr.A02444 N 0.000
evm.TU.supercontig_85.82 Carica papaya evm.TU.supercontig_85.82 N 0.000
gene22647-v1.0-hybrid Fragaria vesca gene22647-v1.0-hybrid N 0.000
Gorai.001G225500 Gossypium raimondii Gorai.001G225500 N 0.000
Gorai.002G225400 Gossypium raimondii Gorai.002G225400 N 0.000
Gorai.006G142000 Gossypium raimondii Gorai.006G142000 N 0.000
Lus10021035.g Linum usitatissimum Lus10021035.g N 0.000
Lus10023816.g Linum usitatissimum Lus10023816.g N 0.000
MDP0000121180 Malus domestica MDP0000121180 N 0.000
MDP0000179986 Malus domestica MDP0000179986 N 0.000
MDP0000184307 Malus domestica MDP0000184307 N 0.000
MDP0000253656 Malus domestica MDP0000253656 N 0.000
MDP0000280005 Malus domestica MDP0000280005 N 0.000
orange1.1g018583m.g Citrus sinensis orange1.1g018583m.g N 0.000
orange1.1g035950m.g Citrus sinensis orange1.1g035950m.g N 0.000
SapurV1A.0008s0360 Salix purpurea SapurV1A.0008s0360 N 0.000
SapurV1A.0018s0530 Salix purpurea SapurV1A.0018s0530 N 0.000
SapurV1A.0251s0040 Salix purpurea SapurV1A.0251s0040 N 0.000
SapurV1A.4156s0010 Salix purpurea SapurV1A.4156s0010 N 0.000
Thhalv10013850m.g Eutrema salsugineum Thhalv10013850m.g N 0.000
PK00827.1 Cannabis sativa PK00827.1 N 0.000
chr1.LjT38A19.30.nc Lotus japonicus chr1.LjT38A19.30.nc N 0.000
PDK_20s1349221g001 Phoenix dactylifera PDK_20s1349221g001 N 0.000