RFX6 (Felis catus)
RFX

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF02257 (RFX_DNA_binding) IPR003150 ENSFCAG00000018903 T318243_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Rfx6
M09365_2.00 		Mus musculus
BDGTWKCYNDG
CHNRGMAACHV		 Misc
Kulakovskiy et al.(2013)
RFX6_MOUSE.H11MO.0.C 		0.794 0.987
RFX4
M02448_2.00 		Cavia porcellus
GTHDYYNNGN
NCNNRRHDAC		 PBM
Weirauch et al.(2014)
pTH9249 		0.719 0.709
Rfx4
M00186_2.00 		Mus musculus
GTHDYYNNSN
NSNNRRHDAC		 PBM
Badis et al.(2009)
Rfx4_3761 		0.719 0.709
RFX4
M03456_2.00 		Homo sapiens
NGTWRYCATRGHWACN
NGTWDCYATGRYWACN		 SELEX
Jolma et al.(2013)
RFX4_1 		0.719 0.709
RFX4
M03457_2.00 		Homo sapiens
NGTTGCYRRGCAACS
SGTTGCYYRGCAACN		 SELEX
Jolma et al.(2013)
RFX4_2 		0.719 0.709
RFX4
M05721_2.00 		Homo sapiens
BGTWRYCATGRYWACV
BGTWRYCATGRYWACV		 SELEX
Yin et al.(2017)
RFX4_eDBD_HT-SELEX 		0.719 0.709
RFX4
M05722_2.00 		Homo sapiens
BGTWRYCATGRYWACV
BGTWRYCATGRYWACV		 SELEX
Yin et al.(2017)
RFX4_eDBD_Methyl-HT-SELEX 		0.719 0.709
Rfx3
M00188_2.00 		Mus musculus
SNTRRHDACN
NGTHDYYANS		 PBM
Badis et al.(2009)
Rfx3_3961 		0.688 0.608
Rfx3
M03463_2.00 		Mus musculus
SGTTRCCATGGYAACS
SGTTRCCATGGYAACS		 SELEX
Jolma et al.(2013)
Rfx3_1 		0.688 0.608
Rfx3
M09368_2.00 		Mus musculus
BBGTTGCCATGGNRAC
GTYNCCATGGCAACVV		 Misc
Kulakovskiy et al.(2013)
RFX3_MOUSE.H11MO.0.C 		0.688 0.608
RFX1
M02447_2.00 		Anolis carolinensis
GTHRCYANGN
NCNTRGYDAC		 PBM
Weirauch et al.(2014)
pTH9223 		0.688 0.608
RFX1
M02451_2.00 		Tetraodon nigroviridis
GTHDYYANGN
NCNTRRHDAC		 PBM
Weirauch et al.(2014)
pTH9385 		0.688 0.608
RFX1
M05723_2.00 		Homo sapiens
BGTTRYCATGRYAACV
BGTTRYCATGRYAACV		 SELEX
Yin et al.(2017)
RFX1_eDBD_HT-SELEX 		0.688 0.608
Rfx1
M08162_2.00 		Mus musculus
GTTGCYADGGNRAC
GTYNCCHTRGCAAC		 ChIP-seq
Mathelier et al.(2014)
MA0509.1 		0.688 0.608
RFX1
M09363_2.00 		Homo sapiens
BBBSSNGTTGCCADGGNRMCVV
BBGKYNCCHTGGCAACNSSVVV		 Misc
Kulakovskiy et al.(2013)
RFX1_HUMAN.H11MO.0.B 		0.688 0.608
Rfx1
M09367_2.00 		Mus musculus
BBBSSNGTTGCCADGGNRMCVV
BBGKYNCCHTGGCAACNSSVVV		 Misc
Kulakovskiy et al.(2013)
RFX1_MOUSE.H11MO.0.A 		0.688 0.608
RFX1
M11245_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$EFC_Q6 		0.688 0.608
RFX1
M11246_2.00 		Homo sapiens
HNGTTRCYWVGYDMYNN
NNRKHRCBWRGYAACND		 Transfac
Matys et al.(2006)
V$RFX1_01 		0.688 0.608
RFX1
M11247_2.00 		Homo sapiens
HNGTTRCYWBVGYDMYNN
NNRKHRCBVWRGYAACND		 Transfac
Matys et al.(2006)
V$RFX1_02 		0.688 0.608
RFX1
M11248_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$RFX1_Q6 		0.688 0.608
RFX1
M05724_2.00 		Homo sapiens
BGTWRYCATGRYWACV
BGTWRYCATGRYWACV		 SELEX
Yin et al.(2017)
RFX1_eDBD_Methyl-HT-SELEX 		0.688 0.608
G4VLF2_SCHMA
M02452_2.00 		Schistosoma mansoni
GTTGCTAD
HTAGCAAC		 PBM
Weirauch et al.(2014)
pTH8587 		0.688 0.608
RFX2
M02449_2.00 		Homo sapiens
BGTHRYYADG
CHTRRYDACV		 PBM
Weirauch et al.(2014)
pTH9194 		0.688 0.608
RFX2
M02450_2.00 		Ornithorhynchus anatinus
NGTHRYYANV
BNTRRYDACN		 PBM
Weirauch et al.(2014)
pTH9269 		0.688 0.608
GB41876
M02453_2.00 		Apis mellifera
GTHDCYANVN
NBNTRGHDAC		 PBM
Weirauch et al.(2014)
pTH9226 		0.687 0.595
Sjc_0102030
M02455_2.00 		Schistosoma japonicum
GTTRCYANG
CNTRGYAAC		 PBM
Weirauch et al.(2014)
pTH9285 		0.686 0.595
XP_002157607.1
M02456_2.00 		Hydra magnipapillata
GTHDYYDNVN
NBNHRRHDAC		 PBM
Weirauch et al.(2014)
pTH9199 		0.686 0.570
Rfx
M03959_2.00 		Drosophila melanogaster
NGTHRCYATRGYDACN
NGTHRCYATRGYDACN		 SELEX
Nitta et al.(2015)
Rfx_1 		0.686 0.582
Rfx
M03960_2.00 		Drosophila melanogaster
GTTGCTARGCAAC
GTTGCYTAGCAAC		 SELEX
Nitta et al.(2015)
Rfx_2 		0.686 0.582
Rfx
M03961_2.00 		Drosophila melanogaster
BGTWRCCATGGYWACV
BGTWRCCATGGYWACV		 SELEX
Nitta et al.(2015)
Rfx_3 		0.686 0.582
Rfx
M03962_2.00 		Drosophila melanogaster
GTTRCYAWTRGYAAC
GTTRCYAWTRGYAAC		 SELEX
Nitta et al.(2015)
Rfx_4 		0.686 0.582
Rfx
M03963_2.00 		Drosophila melanogaster
GTTGCTARGCAAC
GTTGCYTAGCAAC		 SELEX
Nitta et al.(2015)
Rfx_5 		0.686 0.582
Rfx2
M03461_2.00 		Mus musculus
BGTTRCCATGGYAACV
BGTTRCCATGGYAACV		 SELEX
Jolma et al.(2013)
Rfx2_1 		0.682 0.608
Rfx2
M03462_2.00 		Mus musculus
SGTTGCTARGCAACV
BGTTGCYTAGCAACS		 SELEX
Jolma et al.(2013)
Rfx2_2 		0.682 0.608
Rfx2
M05888_2.00 		Mus musculus
NGTTRCYATGGHDAY
RTHDCCATRGYAACN		 SMiLE-seq
Isakova et al.(2017)
RFX2 		0.682 0.608
Rfx2
M09366_2.00 		Mus musculus
NBYBGTYNCCMTGGCAACNSSS
SSSNGTTGCCAKGGNRACVRVN		 Misc
Kulakovskiy et al.(2013)
RFX2_MOUSE.H11MO.0.A 		0.682 0.608
RFX3
M03452_2.00 		Homo sapiens
NGTTRCCATGGHAACV
BGTTDCCATGGYAACN		 SELEX
Jolma et al.(2013)
RFX3_1 		0.681 0.595
RFX3
M03453_2.00 		Homo sapiens
BGTTGCTARGCAACS
SGTTGCYTAGCAACV		 SELEX
Jolma et al.(2013)
RFX3_2 		0.681 0.595
RFX3
M02750_2.00 		Homo sapiens
GTTRYYATGG
CCATRRYAAC		 SELEX
Jolma et al.(2010)
RFX3_dimer 		0.681 0.595
RFX3
M05715_2.00 		Homo sapiens
NGTTRYYATRRYAACN
NGTTRYYATRRYAACN		 SELEX
Yin et al.(2017)
RFX3_eDBD_HT-SELEX_1 		0.681 0.595
RFX3
M05716_2.00 		Homo sapiens
BGTTGCTARGCAACS
SGTTGCYTAGCAACV		 SELEX
Yin et al.(2017)
RFX3_eDBD_HT-SELEX_2 		0.681 0.595
RFX3
M09361_2.00 		Homo sapiens
BGTTRCCATGGYRN
NYRCCATGGYAACV		 Misc
Kulakovskiy et al.(2013)
RFX3_HUMAN.H11MO.0.B 		0.681 0.595
RFX3
M09627_2.00 		Homo sapiens
BNGTTGCCATGGCAAC
GTTGCCATGGCAACNV		 Misc
Heinz et al.(2010)
K562-RFX3_SRA012198 		0.681 0.595
RFX3
M05717_2.00 		Homo sapiens
BGTTRYYATRRYAACV
BGTTRYYATRRYAACV		 SELEX
Yin et al.(2017)
RFX3_eDBD_Methyl-HT-SELEX_1 		0.681 0.595
RFX3
M05718_2.00 		Homo sapiens
BGTTGCTARGCAACV
BGTTGCYTAGCAACV		 SELEX
Yin et al.(2017)
RFX3_eDBD_Methyl-HT-SELEX_2 		0.681 0.595
daf-19
M00709_2.00 		Caenorhabditis elegans
SGTTRCTADG
CHTAGYAACS		 PBM
Narasimhan et al.(2015)
pTH10021 		0.681 0.544
RFX2
M03454_2.00 		Homo sapiens
BGTTRCCATGGYAACV
BGTTRCCATGGYAACV		 SELEX
Jolma et al.(2013)
RFX2_1 		0.680 0.595
RFX2
M03455_2.00 		Homo sapiens
SGTTGCTARGCAACS
SGTTGCYTAGCAACS		 SELEX
Jolma et al.(2013)
RFX2_2 		0.680 0.595
RFX2
M05719_2.00 		Homo sapiens
NGTWDYYATRRHWACN
NGTWDYYATRRHWACN		 SELEX
Yin et al.(2017)
RFX2_eDBD_HT-SELEX 		0.680 0.595
RFX2
M09362_2.00 		Homo sapiens
YNGTTGCCATGGVRACVV
BBGTYBCCATGGCAACNR		 Misc
Kulakovskiy et al.(2013)
RFX2_HUMAN.H11MO.0.A 		0.680 0.595
RFX2
M09628_2.00 		Homo sapiens
BGTTKCCATGGMAAC
GTTKCCATGGMAACV		 Misc
Heinz et al.(2010)
LoVo-RFX2_GSE49402 		0.680 0.595
RFX2
M05720_2.00 		Homo sapiens
BGTTRCCATGRYAACV
BGTTRYCATGGYAACV		 SELEX
Yin et al.(2017)
RFX2_eDBD_Methyl-HT-SELEX 		0.680 0.595
PHUM046580
M02454_2.00 		Pediculus humanus
NGTHDCYANV
BNTRGHDACN		 PBM
Weirauch et al.(2014)
pTH9278 		0.679 0.620
For this family, TFs with SR scores > 0.650 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSFCAP00000015694 RFX 55 133

Links

Other RFX family TFs
Other Felis catus TFs

564 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
RBE Arabidopsis thaliana AT5G06070 D
Al_scaffold_0409_3 Arabidopsis lyrata Al_scaffold_0409_3 I
ZFP11 Arabidopsis thaliana AT2G42410 I
SUP Arabidopsis thaliana AT3G23130 I
AT4G17810 Arabidopsis thaliana AT4G17810 I
BGIOSGA015610 Oryza indica BGIOSGA015610 I
BGIOSGA018378 Oryza indica BGIOSGA018378 I
BGIOSGA033510 Oryza indica BGIOSGA033510 I
Bo1g017920 Brassica oleracea Bo1g017920 I
Bo1g102390 Brassica oleracea Bo1g102390 I
Bo3g003640 Brassica oleracea Bo3g003640 I
Bo9g176590 Brassica oleracea Bo9g176590 I
Bra005874 Brassica rapa Bra005874 I
Bra009160 Brassica rapa Bra009160 I
Bra013257 Brassica rapa Bra013257 I
Bra023759 Brassica rapa Bra023759 I
BRADI1G52490 Brachypodium distachyon BRADI1G52490 I
BRADI3G55760 Brachypodium distachyon BRADI3G55760 I
F775_00917 Aegilops tauschii F775_00917 I
F775_21953 Aegilops tauschii F775_21953 I
SUP Arabidopsis lyrata fgenesh2_kg.3__2524__AT3G23130.1 I
RBE Arabidopsis lyrata fgenesh2_kg.6__542__AT5G06070.1 I
GLYMA07G16290 Glycine max GLYMA07G16290 I
GLYMA11G34285 Glycine max GLYMA11G34285 I
GLYMA12G35930 Glycine max GLYMA12G35930 I
GLYMA13G34450 Glycine max GLYMA13G34450 I
GRMZM2G000126 Zea mays GRMZM2G000126 I
GRMZM2G137736 Zea mays GRMZM2G137736 I
GRMZM2G344974 Zea mays GRMZM2G344974 I
GRMZM2G409452 Zea mays GRMZM2G409452 I
GRMZM2G443109 Zea mays GRMZM2G443109 I
GSMUA_Achr7G26850_001 Musa acuminata GSMUA_Achr7G26850_001 I
LPERR04G01660 Leersia perrieri LPERR04G01660 I
LPERR05G08090 Leersia perrieri LPERR05G08090 I
MLOC_76482 Hordeum vulgare MLOC_76482 I
MTR_1g070265 Medicago truncatula MTR_1g070265 I
OB02G10110 Oryza brachyantha OB02G10110 I
OB02G44430 Oryza brachyantha OB02G44430 I
OB04G12040 Oryza brachyantha OB04G12040 I
OB05G18710 Oryza brachyantha OB05G18710 I
OBART04G02370 Oryza barthii OBART04G02370 I
OBART05G10090 Oryza barthii OBART05G10090 I
OBART11G23770 Oryza barthii OBART11G23770 I
OGLUM04G02100 Oryza glumaepatula OGLUM04G02100 I
OGLUM05G10360 Oryza glumaepatula OGLUM05G10360 I
OGLUM11G22950 Oryza glumaepatula OGLUM11G22950 I
OLONG_005038 Oryza longistaminata OLONG_005038 I
OLONG_022667 Oryza longistaminata OLONG_022667 I
OLONG_023754 Oryza longistaminata OLONG_023754 I
OMERI04G02610 Oryza meridionalis OMERI04G02610 I
OMERI07G13080 Oryza meridionalis OMERI07G13080 I
ONIVA04G01910 Oryza nivara ONIVA04G01910 I
ONIVA06G26970 Oryza nivara ONIVA06G26970 I
ONIVA11G23290 Oryza nivara ONIVA11G23290 I
OPUNC05G08760 Oryza punctata OPUNC05G08760 I
OPUNC11G05640 Oryza punctata OPUNC11G05640 I
ORGLA05G0088100 Oryza glaberrima ORGLA05G0088100 I
ORUFI04G03150 Oryza rufipogon ORUFI04G03150 I
ORUFI05G10920 Oryza rufipogon ORUFI05G10920 I
ORUFI11G25670 Oryza rufipogon ORUFI11G25670 I
OS04G0168100 Oryza sativa OS04G0168100 I
OS05G0286100 Oryza sativa OS05G0286100 I
OS11G0707300 Oryza sativa OS11G0707300 I
PGSC0003DMG400017271 Solanum tuberosum PGSC0003DMG400017271 I
PGSC0003DMG400040225 Solanum tuberosum PGSC0003DMG400040225 I
POPTR_0002s04260 Populus trichocarpa POPTR_0002s04260 I
POPTR_0008s16390 Populus trichocarpa POPTR_0008s16390 I
POPTR_0010s08530 Populus trichocarpa POPTR_0010s08530 I
POPTR_0016s10480 Populus trichocarpa POPTR_0016s10480 I
PRUPE_ppa015007mg Prunus persica PRUPE_ppa015007mg I
Sb02g009930 Sorghum bicolor Sb02g009930 I
Sb04g037590 Sorghum bicolor Sb04g037590 I
Sb06g001730 Sorghum bicolor Sb06g001730 I
scaffold_403098.1 Arabidopsis lyrata scaffold_403098.1 I
Si011797m.g Setaria italica Si011797m.g I
Si019563m.g Setaria italica Si019563m.g I
Si024070m.g Setaria italica Si024070m.g I
Si032478m.g Setaria italica Si032478m.g I
Solyc06g053720.1 Solanum lycopersicum Solyc06g053720.1 I
Solyc09g089590.1 Solanum lycopersicum Solyc09g089590.1 I
TCM_021875 Theobroma cacao TCM_021875 I
Traes_1AL_80D0BD0DC Triticum aestivum Traes_1AL_80D0BD0DC I
Traes_1BL_4026DC5011 Triticum aestivum Traes_1BL_4026DC5011 I
Traes_2AS_099955797 Triticum aestivum Traes_2AS_099955797 I
Traes_2BS_0544D9D4B Triticum aestivum Traes_2BS_0544D9D4B I
Traes_2DS_035AA95E3 Triticum aestivum Traes_2DS_035AA95E3 I
TRIUR3_03721 Triticum urartu TRIUR3_03721 I
TRIUR3_04794 Triticum urartu TRIUR3_04794 I
TRIUR3_25222 Triticum urartu TRIUR3_25222 I
VIT_05s0049g00070 Vitis vinifera VIT_05s0049g00070 I
VIT_05s0049g00080 Vitis vinifera VIT_05s0049g00080 I
Ca_12901 Cicer arietinum Ca_12901 I
Cla008944 Citrullus lanatus Cla008944 I
Cla016442 Citrullus lanatus Cla016442 I
Cla021878 Citrullus lanatus Cla021878 I
Pm009420 Prunus mume Pm009420 I
29603.m000536 Ricinus communis 29603.m000536 I
cassava14614.m1 Manihot esculenta cassava14614.m1 I
cassava22028.m1 Manihot esculenta cassava22028.m1 I
cassava3359.m1 Manihot esculenta cassava3359.m1 I
cassava40050.m1 Manihot esculenta cassava40050.m1 I
Cucsa.255130 Cucumis sativus Cucsa.255130 I
Cucsa.313240 Cucumis sativus Cucsa.313240 I
Cucsa.321760 Cucumis sativus Cucsa.321760 I
e_gw1.14.264.1 Physcomitrella patens e_gw1.14.264.1 I
e_gw1.1.457.1 Physcomitrella patens e_gw1.1.457.1 I
e_gw1.186.49.1 Physcomitrella patens e_gw1.186.49.1 I
e_gw1.6.268.1 Physcomitrella patens e_gw1.6.268.1 I
mg013419m Mimulus guttatus mg013419m I
mgf024356m Mimulus guttatus mgf024356m I
Bostr.13129s0367 Boechera stricta Bostr.13129s0367 I
Bostr.19424s0332 Boechera stricta Bostr.19424s0332 I
Bostr.25993s0539 Boechera stricta Bostr.25993s0539 I
Bostr.30275s0246 Boechera stricta Bostr.30275s0246 I
Cagra.2117s0055 Capsella grandiflora Cagra.2117s0055 I
Cagra.2636s0028 Capsella grandiflora Cagra.2636s0028 I
Cagra.3356s0074 Capsella grandiflora Cagra.3356s0074 I
Cagra.3462s0001 Capsella grandiflora Cagra.3462s0001 I
Carubv10002935m.g Capsella rubella Carubv10002935m.g I
Carubv10006881m.g Capsella rubella Carubv10006881m.g I
Carubv10016073m.g Capsella rubella Carubv10016073m.g I
Carubv10024766m.g Capsella rubella Carubv10024766m.g I
Ciclev10006961m.g Citrus clementina Ciclev10006961m.g I
evm.TU.supercontig_44.99 Carica papaya evm.TU.supercontig_44.99 I
gene08240-v1.0-hybrid Fragaria vesca gene08240-v1.0-hybrid I
Gorai.005G047800 Gossypium raimondii Gorai.005G047800 I
Gorai.006G247700 Gossypium raimondii Gorai.006G247700 I
Gorai.008G226800 Gossypium raimondii Gorai.008G226800 I
Gorai.012G106300 Gossypium raimondii Gorai.012G106300 I
Lus10000705.g Linum usitatissimum Lus10000705.g I
Lus10021213.g Linum usitatissimum Lus10021213.g I
Lus10022204.g Linum usitatissimum Lus10022204.g I
Lus10022206.g Linum usitatissimum Lus10022206.g I
Lus10024875.g Linum usitatissimum Lus10024875.g I
MDP0000225209 Malus domestica MDP0000225209 I
orange1.1g041626m.g Citrus sinensis orange1.1g041626m.g I
Pavir.Aa03593 Panicum virgatum Pavir.Aa03593 I
Pavir.Ab00024 Panicum virgatum Pavir.Ab00024 I
Pavir.Ab03315 Panicum virgatum Pavir.Ab03315 I
Pavir.Ba02387 Panicum virgatum Pavir.Ba02387 I
Pavir.Bb00955 Panicum virgatum Pavir.Bb00955 I
Pavir.Gb02516 Panicum virgatum Pavir.Gb02516 I
Pavir.J31403 Panicum virgatum Pavir.J31403 I
SapurV1A.0006s1030 Salix purpurea SapurV1A.0006s1030 I
SapurV1A.0007s0790 Salix purpurea SapurV1A.0007s0790 I
SapurV1A.0007s0800 Salix purpurea SapurV1A.0007s0800 I
SapurV1A.0292s0190 Salix purpurea SapurV1A.0292s0190 I
SapurV1A.0292s0200 Salix purpurea SapurV1A.0292s0200 I
SapurV1A.0378s0150 Salix purpurea SapurV1A.0378s0150 I
Thhalv10015420m.g Eutrema salsugineum Thhalv10015420m.g I
Thhalv10017870m.g Eutrema salsugineum Thhalv10017870m.g I
Thhalv10021992m.g Eutrema salsugineum Thhalv10021992m.g I
LjSGA_038753.2 Lotus japonicus LjSGA_038753.2 I
PDK_20s1313421g001 Phoenix dactylifera PDK_20s1313421g001 I
PDK_20s1360411g001 Phoenix dactylifera PDK_20s1360411g001 I