GB49419 (Apis mellifera)
RFX

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF02257 (RFX_DNA_binding) IPR003150 GB49419 T318620_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Rfx7
M00823_2.00 		Mus musculus
GTYRCYRNSB
VSNYRGYRAC		 PBM
Weirauch et al.(2013)
pTH3516 		0.699 0.570
Rfx7
M00187_2.00 		Mus musculus
BGTHDYYRNN
NNYRRHDACV		 PBM
Badis et al.(2009)
Rfxdc2_3516 		0.699 0.570
RFX7
M05729_2.00 		Homo sapiens
BGTTRCYRY
RYRGYAACV		 SELEX
Yin et al.(2017)
RFX7_eDBD_HT-SELEX 		0.699 0.570
RFX7
M05730_2.00 		Homo sapiens
BGTTGCYRB
VYRGCAACV		 SELEX
Yin et al.(2017)
RFX7_eDBD_Methyl-HT-SELEX 		0.699 0.570
RFX5
M03458_2.00 		Homo sapiens
BGTTRCYATRGYAACV
BGTTRCYATRGYAACV		 SELEX
Jolma et al.(2013)
RFX5_1 		0.683 0.481
RFX5
M03459_2.00 		Homo sapiens
BGTTGCYATGGYAACV
BGTTRCCATRGCAACV		 SELEX
Jolma et al.(2013)
RFX5_2 		0.683 0.481
RFX5
M03460_2.00 		Homo sapiens
BGTTGCYATGGYAACV
BGTTRCCATRGCAACV		 SELEX
Jolma et al.(2013)
RFX5_3 		0.683 0.481
RFX5
M05725_2.00 		Homo sapiens
BGTTRCYANGBGTTGCYRN
NYRGCAACVCNTRGYAACV		 SELEX
Yin et al.(2017)
RFX5_eDBD_HT-SELEX_1 		0.683 0.481
RFX5
M05726_2.00 		Homo sapiens
NYRVYAACSGTTRCYAN
NTRGYAACSGTTRBYRN		 SELEX
Yin et al.(2017)
RFX5_eDBD_HT-SELEX_2 		0.683 0.481
RFX5
M08009_2.00 		Homo sapiens
KCRBYDGTTRCYRRG
CYYRGYAACHRVYGM		 ChIP-seq
Gerstein et al.(2012)
GM12878_RFX5_Stanford 		0.683 0.481
RFX5
M08010_2.00 		Homo sapiens
DBVBYDGTTGCYRGGBVRR
YYBVCCYRGCAACHRVBVH		 ChIP-seq
Gerstein et al.(2012)
H1-hESC_RFX5_Stanford 		0.683 0.481
RFX5
M08011_2.00 		Homo sapiens
TCVBYDGTTDCYRDG
CHYRGHAACHRVBGA		 ChIP-seq
Gerstein et al.(2012)
HeLa-S3_RFX5_Stanford 		0.683 0.481
RFX5
M08012_2.00 		Homo sapiens
YDGTTRCYRKGBVRV
BYBVCMYRGYAACHR		 ChIP-seq
Gerstein et al.(2012)
HepG2_RFX5_Stanford 		0.683 0.481
RFX5
M09364_2.00 		Homo sapiens
VNNVBYDGTTGCYRKGNVRV
BYBNCMYRGCAACHRVBNNB		 Misc
Kulakovskiy et al.(2013)
RFX5_HUMAN.H11MO.0.A 		0.683 0.481
RFX5
M09629_2.00 		Homo sapiens
NDGTTRCYADGV
BCHTRGYAACHN		 Misc
Heinz et al.(2010)
GM12878-Rfx5_GSE31477 		0.683 0.481
RFX5
M11249_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$RFX5_03 		0.683 0.481
RFX5
M11250_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$RFX5_05 		0.683 0.481
RFX5
M05727_2.00 		Homo sapiens
BGTYRYYRNGBGTTGYYRN
NYRRCAACVCNYRRYRACV		 SELEX
Yin et al.(2017)
RFX5_eDBD_Methyl-HT-SELEX_1 		0.683 0.481
RFX5
M05728_2.00 		Homo sapiens
NTRGYAASSGTYRBYRN
NYRVYRACSSTTRCYAN		 SELEX
Yin et al.(2017)
RFX5_eDBD_Methyl-HT-SELEX_2 		0.683 0.481
For this family, TFs with SR scores > 0.650 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
GB49419-PA RFX 114 192

Links

Other RFX family TFs
Other Apis mellifera TFs

228 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AMTR_s00007p00170710 Amborella trichopoda AMTR_s00007p00170710 I
SapurV1A.1821s0030 Salix purpurea SapurV1A.1821s0030 I
SapurV1A.1185s0010 Salix purpurea SapurV1A.1185s0010 I
Eucgr.E02743 Eucalyptus grandis Eucgr.E02743 I
Aquca_081_00012 Aquilegia coerulea Aquca_081_00012 I
Aquca_004_00748 Aquilegia coerulea Aquca_004_00748 I
Cucsa.213230 Cucumis sativus Cucsa.213230 I
Cla019977 Citrullus lanatus Cla019977 I
VIT_08s0040g01240 Vitis vinifera VIT_08s0040g01240 I
TRIUR3_31897 Triticum urartu TRIUR3_31897 I
Traes_4DL_7BD3165FB Triticum aestivum Traes_4DL_7BD3165FB I
Traes_4BL_A2B32FCEE Triticum aestivum Traes_4BL_A2B32FCEE I
Traes_4AS_DD16F89E7 Triticum aestivum Traes_4AS_DD16F89E7 I
MLOC_66385 Hordeum vulgare MLOC_66385 I
F775_10096 Aegilops tauschii F775_10096 I
AMTR_s00002p00019320 Amborella trichopoda AMTR_s00002p00019320 I
Cagra.0578s0007 Capsella grandiflora Cagra.0578s0007 N
evm.TU.supercontig_92.83 Carica papaya evm.TU.supercontig_92.83 N
Bo3g035410 Brassica oleracea Bo3g035410 N
Eucgr.A02230 Eucalyptus grandis Eucgr.A02230 N
Ciclev10012626m.g Citrus clementina Ciclev10012626m.g N
Carubv10023903m.g Capsella rubella Carubv10023903m.g N
Carubv10017947m.g Capsella rubella Carubv10017947m.g N
Cagra.1642s0077 Capsella grandiflora Cagra.1642s0077 N
Gorai.007G352300 Gossypium raimondii Gorai.007G352300 N
Bostr.9345s0019 Boechera stricta Bostr.9345s0019 N
Bostr.20505s0075 Boechera stricta Bostr.20505s0075 N
Bo4g012960 Brassica oleracea Bo4g012960 N
Bo4g112750 Brassica oleracea Bo4g112750 N
mgf009382m Mimulus guttatus mgf009382m N
Cucsa.340200 Cucumis sativus Cucsa.340200 N
gene14814-v1.0-hybrid Fragaria vesca gene14814-v1.0-hybrid N
Bo4g190700 Brassica oleracea Bo4g190700 N
Lus10018020.g Linum usitatissimum Lus10018020.g N
Lus10042017.g Linum usitatissimum Lus10042017.g N
MDP0000138102 Malus domestica MDP0000138102 N
MDP0000213892 Malus domestica MDP0000213892 N
orange1.1g026479m.g Citrus sinensis orange1.1g026479m.g N
Pavir.J02699 Panicum virgatum Pavir.J02699 N
Pavir.J24868 Panicum virgatum Pavir.J24868 N
SapurV1A.0159s0020 Salix purpurea SapurV1A.0159s0020 N
SapurV1A.0189s0140 Salix purpurea SapurV1A.0189s0140 N
BHLH106 Arabidopsis thaliana AT2G41130 N
Thhalv10006410m.g Eutrema salsugineum Thhalv10006410m.g N
Thhalv10017546m.g Eutrema salsugineum Thhalv10017546m.g N
PK23387.1 Cannabis sativa PK23387.1 N
chr1.CM0816.330.nc Lotus japonicus chr1.CM0816.330.nc N
PRUPE_ppa011532mg Prunus persica PRUPE_ppa011532mg N
GLYMA19G30910 Glycine max GLYMA19G30910 N
GRMZM2G027068 Zea mays GRMZM2G027068 N
GSMUA_Achr8G23980_001 Musa acuminata GSMUA_Achr8G23980_001 N
LPERR03G32730 Leersia perrieri LPERR03G32730 N
GLYMA02G23590 Glycine max GLYMA02G23590 N
OGLUM03G38250 Oryza glumaepatula OGLUM03G38250 N
OMERI03G35360 Oryza meridionalis OMERI03G35360 N
ONIVA03G40100 Oryza nivara ONIVA03G40100 N
OPUNC03G35590 Oryza punctata OPUNC03G35590 N
ORGLA03G0352000 Oryza glaberrima ORGLA03G0352000 N
ORUFI03G40090 Oryza rufipogon ORUFI03G40090 N
OS03G0811400 Oryza sativa OS03G0811400 N
PGSC0003DMG400008378 Solanum tuberosum PGSC0003DMG400008378 N
POPTR_0006s03550 Populus trichocarpa POPTR_0006s03550 N
POPTR_0016s03460 Populus trichocarpa POPTR_0016s03460 N
GLYMA03G28150 Glycine max GLYMA03G28150 N
Sb01g003830 Sorghum bicolor Sb01g003830 N
scaffold_402920.1 Arabidopsis lyrata scaffold_402920.1 N
Solyc10g078380.1 Solanum lycopersicum Solyc10g078380.1 N
TCM_024016 Theobroma cacao TCM_024016 N
BRADI2G07050 Brachypodium distachyon BRADI2G07050 N
BRADI1G04280 Brachypodium distachyon BRADI1G04280 N
Traes_5BL_CBFAD4B59 Triticum aestivum Traes_5BL_CBFAD4B59 N
Bra016951 Brassica rapa Bra016951 N
Bra014672 Brassica rapa Bra014672 N
Ca_07159 Cicer arietinum Ca_07159 N
Cla017413 Citrullus lanatus Cla017413 N
Bra004599 Brassica rapa Bra004599 N
Pm025589 Prunus mume Pm025589 N
cassava7163.valid.m1 Manihot esculenta cassava7163.valid.m1 N