D918_02290 (Trichuris suis)
RFX

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF02257 (RFX_DNA_binding) IPR003150 D918_02290 T319175_2.00 WormBase:ParaSite (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
RFX1
M00066_2.00 		Saccharomyces cerevisiae
NSGTTGCYAN
NTRGCAACSN		 PBM
Badis et al.(2008)
RFX1_4537 		0.655 0.342
RFX1
M07494_2.00 		Saccharomyces cerevisiae
BGTTRCYA
TRGYAACV		 PBM, CSA and or DIP-chip
Mathelier et al.(2014)
MA0365.1 		0.655 0.342
RFX1
M08600_2.00 		Saccharomyces cerevisiae
CGTYRBYAYRGYWACM
KGTWRCYRTRVYRACG		 Misc
DeBoer et al.(2011)
YLR176C_1478 		0.655 0.342
RFX1
M08601_2.00 		Saccharomyces cerevisiae
BGTTRCYA
TRGYAACV		 Misc
DeBoer et al.(2011)
YLR176C_496 		0.655 0.342
RFX1
M11251_2.00 		Saccharomyces cerevisiae Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
F$RFX1_02 		0.655 0.342
For this family, TFs with SR scores > 0.650 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
D918_02290 RFX 383 461

Links

Other RFX family TFs
Other Trichuris suis TFs

56 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
SHN2 Arabidopsis thaliana AT5G11190 D
ERF003 Arabidopsis thaliana AT5G25190 D
SHN3 Arabidopsis lyrata Al_scaffold_0006_1028 I
AMTR_s00019p00232450 Amborella trichopoda AMTR_s00019p00232450 I
AMTR_s00150p00091360 Amborella trichopoda AMTR_s00150p00091360 I
BGIOSGA005433 Oryza indica BGIOSGA005433 I
BGIOSGA014193 Oryza indica BGIOSGA014193 I
BGIOSGA014194 Oryza indica BGIOSGA014194 I
BGIOSGA022427 Oryza indica BGIOSGA022427 I
Bo2g158960 Brassica oleracea Bo2g158960 I
Bo7g096180 Brassica oleracea Bo7g096180 I
Bo9g011380 Brassica oleracea Bo9g011380 I
Bo9g011440 Brassica oleracea Bo9g011440 I
Bo9g171490 Brassica oleracea Bo9g171490 I
Bra008985 Brassica rapa Bra008985 I
Bra009824 Brassica rapa Bra009824 I
Bra020490 Brassica rapa Bra020490 I
Bra036536 Brassica rapa Bra036536 I
Bra036543 Brassica rapa Bra036543 I
BRADI1G47480 Brachypodium distachyon BRADI1G47480 I
BRADI3G54160 Brachypodium distachyon BRADI3G54160 I
F775_22946 Aegilops tauschii F775_22946 I
fgenesh2_kg.6__2505__AT5G25190.1 Arabidopsis lyrata fgenesh2_kg.6__2505__AT5G25190.1 I
GLYMA04G06690 Glycine max GLYMA04G06690 I
GLYMA06G06780 Glycine max GLYMA06G06780 I
GLYMA07G02930 Glycine max GLYMA07G02930 I
GLYMA08G23160 Glycine max GLYMA08G23160 I
GLYMA13G44660 Glycine max GLYMA13G44660 I
GLYMA14G13470 Glycine max GLYMA14G13470 I
GLYMA15G00660 Glycine max GLYMA15G00660 I
GLYMA17G33075 Glycine max GLYMA17G33075 I
GRMZM2G067463 Zea mays GRMZM2G067463 I
GRMZM2G104260 Zea mays GRMZM2G104260 I
GRMZM2G111415 Zea mays GRMZM2G111415 I
GRMZM2G135452 Zea mays GRMZM2G135452 I
GRMZM2G156006 Zea mays GRMZM2G156006 I
GSMUA_Achr10G24170_001 Musa acuminata GSMUA_Achr10G24170_001 I
GSMUA_Achr4G02200_001 Musa acuminata GSMUA_Achr4G02200_001 I
GSMUA_Achr5G22840_001 Musa acuminata GSMUA_Achr5G22840_001 I
GSMUA_Achr7G16060_001 Musa acuminata GSMUA_Achr7G16060_001 I
GSMUA_Achr7G19320_001 Musa acuminata GSMUA_Achr7G19320_001 I
GSMUA_Achr9G13760_001 Musa acuminata GSMUA_Achr9G13760_001 I
LPERR02G29600 Leersia perrieri LPERR02G29600 I
LPERR06G04830 Leersia perrieri LPERR06G04830 I
MLOC_55323 Hordeum vulgare MLOC_55323 I
MLOC_6403 Hordeum vulgare MLOC_6403 I
MTR_3g106290 Medicago truncatula MTR_3g106290 I
MTR_4g008860 Medicago truncatula MTR_4g008860 I
OB02G42740 Oryza brachyantha OB02G42740 I
OB04G34960 Oryza brachyantha OB04G34960 I
OB06G14850 Oryza brachyantha OB06G14850 I
OBART02G35950 Oryza barthii OBART02G35950 I
OBART04G27970 Oryza barthii OBART04G27970 I
OBART06G05300 Oryza barthii OBART06G05300 I
OGLUM02G37170 Oryza glumaepatula OGLUM02G37170 I
OGLUM04G27860 Oryza glumaepatula OGLUM04G27860 I
OGLUM06G05450 Oryza glumaepatula OGLUM06G05450 I
OLONG_005458 Oryza longistaminata OLONG_005458 I
OMERI02G33910 Oryza meridionalis OMERI02G33910 I
OMERI04G23370 Oryza meridionalis OMERI04G23370 I
OMERI06G06320 Oryza meridionalis OMERI06G06320 I
ONIVA02G37990 Oryza nivara ONIVA02G37990 I
ONIVA04G26640 Oryza nivara ONIVA04G26640 I
ONIVA06G06080 Oryza nivara ONIVA06G06080 I
OPUNC04G25430 Oryza punctata OPUNC04G25430 I
OPUNC06G05070 Oryza punctata OPUNC06G05070 I
ORGLA02G0312200 Oryza glaberrima ORGLA02G0312200 I
ORGLA04G0242300 Oryza glaberrima ORGLA04G0242300 I
ORUFI04G29600 Oryza rufipogon ORUFI04G29600 I
ORUFI06G05350 Oryza rufipogon ORUFI06G05350 I
OS02G0797100 Oryza sativa OS02G0797100 I
OS06G0181700 Oryza sativa OS06G0181700 I
PGSC0003DMG400014127 Solanum tuberosum PGSC0003DMG400014127 I
PGSC0003DMG400014196 Solanum tuberosum PGSC0003DMG400014196 I
PGSC0003DMG400026136 Solanum tuberosum PGSC0003DMG400026136 I
PGSC0003DMG400028500 Solanum tuberosum PGSC0003DMG400028500 I
PGSC0003DMG400030228 Solanum tuberosum PGSC0003DMG400030228 I
POPTR_0001s14720 Populus trichocarpa POPTR_0001s14720 I
POPTR_0003s17830 Populus trichocarpa POPTR_0003s17830 I
POPTR_0006s27710 Populus trichocarpa POPTR_0006s27710 I
POPTR_0018s02280 Populus trichocarpa POPTR_0018s02280 I
PRUPE_ppa011795mg Prunus persica PRUPE_ppa011795mg I
PRUPE_ppa016477mg Prunus persica PRUPE_ppa016477mg I
Sb04g036020 Sorghum bicolor Sb04g036020 I
Sb06g031230 Sorghum bicolor Sb06g031230 I
Sb10g005520 Sorghum bicolor Sb10g005520 I
SELMODRAFT_121842 Selaginella moellendorffii SELMODRAFT_121842 I
SELMODRAFT_92334 Selaginella moellendorffii SELMODRAFT_92334 I
Si007359m.g Setaria italica Si007359m.g I
Si018550m.g Setaria italica Si018550m.g I
Si024352m.g Setaria italica Si024352m.g I
Solyc03g117130.2 Solanum lycopersicum Solyc03g117130.2 I
Solyc06g065820.2 Solanum lycopersicum Solyc06g065820.2 I
Solyc06g068360.2 Solanum lycopersicum Solyc06g068360.2 I
TCM_027394 Theobroma cacao TCM_027394 I
TCM_036933 Theobroma cacao TCM_036933 I
Traes_2AL_61DB73424 Triticum aestivum Traes_2AL_61DB73424 I
Traes_2BL_5BA37F95E Triticum aestivum Traes_2BL_5BA37F95E I
TRAES3BF176500010CFD_g Triticum aestivum TRAES3BF176500010CFD_g I
Traes_6DL_31D678054 Triticum aestivum Traes_6DL_31D678054 I
Traes_7AS_89D49F177 Triticum aestivum Traes_7AS_89D49F177 I
Traes_7DS_433704E8E1 Triticum aestivum Traes_7DS_433704E8E1 I
Traes_7DS_433704E8E Triticum aestivum Traes_7DS_433704E8E I
TRIUR3_25005 Triticum urartu TRIUR3_25005 I
VIT_04s0008g06000 Vitis vinifera VIT_04s0008g06000 I
VIT_09s0002g09120 Vitis vinifera VIT_09s0002g09120 I
VIT_09s0002g09140 Vitis vinifera VIT_09s0002g09140 I
Ca_01729 Cicer arietinum Ca_01729 I
Ca_09076 Cicer arietinum Ca_09076 I
Ca_20050 Cicer arietinum Ca_20050 I
Cla006213 Citrullus lanatus Cla006213 I
Cla012914 Citrullus lanatus Cla012914 I
Cla012931 Citrullus lanatus Cla012931 I
Cla015579 Citrullus lanatus Cla015579 I
Cla021283 Citrullus lanatus Cla021283 I
Cla021320 Citrullus lanatus Cla021320 I
Cla022694 Citrullus lanatus Cla022694 I
Cla022695 Citrullus lanatus Cla022695 I
Pm005717 Prunus mume Pm005717 I
Pm013752 Prunus mume Pm013752 I
29588.m000873 Ricinus communis 29588.m000873 I
29848.m004566 Ricinus communis 29848.m004566 I
cassava20662.m1 Manihot esculenta cassava20662.m1 I
cassava38443.m1 Manihot esculenta cassava38443.m1 I
cassava38444.m1 Manihot esculenta cassava38444.m1 I
cassava8560.m1 Manihot esculenta cassava8560.m1 I
Cucsa.096220 Cucumis sativus Cucsa.096220 I
Cucsa.105830 Cucumis sativus Cucsa.105830 I
Cucsa.162710 Cucumis sativus Cucsa.162710 I
Cucsa.162720 Cucumis sativus Cucsa.162720 I
Cucsa.271720 Cucumis sativus Cucsa.271720 I
Cucsa.310360 Cucumis sativus Cucsa.310360 I
estExt_gwp_gw1.C_580005 Physcomitrella patens estExt_gwp_gw1.C_580005 I
gw1.21.122.1 Physcomitrella patens gw1.21.122.1 I
mg019221m Mimulus guttatus mg019221m I
Aquca_016_00154 Aquilegia coerulea Aquca_016_00154 I
Bostr.23997s0014 Boechera stricta Bostr.23997s0014 I
Bostr.29827s0297 Boechera stricta Bostr.29827s0297 I
Cagra.1945s0014 Capsella grandiflora Cagra.1945s0014 I
Carubv10001796m.g Capsella rubella Carubv10001796m.g I
Carubv10003042m.g Capsella rubella Carubv10003042m.g I
Carubv10003050m.g Capsella rubella Carubv10003050m.g I
Ciclev10009593m.g Citrus clementina Ciclev10009593m.g I
Ciclev10026602m.g Citrus clementina Ciclev10026602m.g I
Eucgr.C02719 Eucalyptus grandis Eucgr.C02719 I
Eucgr.F03947 Eucalyptus grandis Eucgr.F03947 I
evm.TU.supercontig_10.113 Carica papaya evm.TU.supercontig_10.113 I
evm.TU.supercontig_127.4 Carica papaya evm.TU.supercontig_127.4 I
gene15036-v1.0-hybrid Fragaria vesca gene15036-v1.0-hybrid I
gene15940-v1.0-hybrid Fragaria vesca gene15940-v1.0-hybrid I
Gorai.001G036500 Gossypium raimondii Gorai.001G036500 I
Gorai.009G060600 Gossypium raimondii Gorai.009G060600 I
Gorai.009G125100 Gossypium raimondii Gorai.009G125100 I
Gorai.010G117500 Gossypium raimondii Gorai.010G117500 I
Gorai.010G222900 Gossypium raimondii Gorai.010G222900 I
Gorai.011G082900 Gossypium raimondii Gorai.011G082900 I
Lus10005343.g Linum usitatissimum Lus10005343.g I
Lus10016815.g Linum usitatissimum Lus10016815.g I
Lus10019414.g Linum usitatissimum Lus10019414.g I
Lus10035859.g Linum usitatissimum Lus10035859.g I
Lus10041614.g Linum usitatissimum Lus10041614.g I
MDP0000127054 Malus domestica MDP0000127054 I
MDP0000243375 Malus domestica MDP0000243375 I
MDP0000279733 Malus domestica MDP0000279733 I
MDP0000297646 Malus domestica MDP0000297646 I
orange1.1g029507m.g Citrus sinensis orange1.1g029507m.g I
orange1.1g030482m.g Citrus sinensis orange1.1g030482m.g I
Pavir.Aa00196 Panicum virgatum Pavir.Aa00196 I
Pavir.Da02059 Panicum virgatum Pavir.Da02059 I
Pavir.Ga00062 Panicum virgatum Pavir.Ga00062 I
Pavir.J12977 Panicum virgatum Pavir.J12977 I
Pavir.J20772 Panicum virgatum Pavir.J20772 I
SapurV1A.0280s0090 Salix purpurea SapurV1A.0280s0090 I
SapurV1A.0705s0080 Salix purpurea SapurV1A.0705s0080 I
SapurV1A.0730s0010 Salix purpurea SapurV1A.0730s0010 I
SapurV1A.0835s0060 Salix purpurea SapurV1A.0835s0060 I
SapurV1A.2028s0010 Salix purpurea SapurV1A.2028s0010 I
Thhalv10004973m.g Eutrema salsugineum Thhalv10004973m.g I
Thhalv10005514m.g Eutrema salsugineum Thhalv10005514m.g I
PK28394.1 Cannabis sativa PK28394.1 I
chr1.LjT03I11.120.nd Lotus japonicus chr1.LjT03I11.120.nd I
LjSGA_107677.3 Lotus japonicus LjSGA_107677.3 I
PDK_20s1355821g002 Phoenix dactylifera PDK_20s1355821g002 I