run (Drosophila simulans)
Runt

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00853 (Runt) IPR013524 FBgn0016352 T319525_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
run
M06444_2.00 		Drosophila melanogaster
WAACCGCAR
YTGCGGTTW		 B1H
Zhu et al.(2011)
run_Bgb_NBT_FBgn0003300 		1.000 1.000
lz
M03964_2.00 		Drosophila melanogaster
HRACCGCAAHM
KDTTGCGGTYD		 SELEX
Nitta et al.(2015)
lz_1 		0.723 0.723
lz
M03965_2.00 		Drosophila melanogaster
HVACCRCARWAACCRCAV
BTGYGGTTWYTGYGGTBD		 SELEX
Nitta et al.(2015)
lz_2 		0.723 0.723
lz
M03966_2.00 		Drosophila melanogaster
WRACCRCAWTAACCRCAA
TTGYGGTTAWTGYGGTYW		 SELEX
Nitta et al.(2015)
lz_3 		0.723 0.723
lz
M03967_2.00 		Drosophila melanogaster
HRACCGCAAAACCRCAR
YTGYGGTTTTGCGGTYD		 SELEX
Nitta et al.(2015)
lz_4 		0.723 0.723
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
FBpp0215902 Runt 107 236

Links

Other Runt family TFs
Other Drosophila simulans TFs

180 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
POPTR_0010s22470 Populus trichocarpa POPTR_0010s22470 I 0.000
Cla000556 Citrullus lanatus Cla000556 I 0.000
cassava11218.m1 Manihot esculenta cassava11218.m1 I 0.000
cassava819.valid.m1 Manihot esculenta cassava819.valid.m1 I 0.000
VIT_06s0004g03350 Vitis vinifera VIT_06s0004g03350 I 0.000
Solyc06g005090.2 Solanum lycopersicum Solyc06g005090.2 I 0.000
Sb09g002190 Sorghum bicolor Sb09g002190 I 0.000
PRUPE_ppa011528mg Prunus persica PRUPE_ppa011528mg I 0.000
PGSC0003DMG400025400 Solanum tuberosum PGSC0003DMG400025400 I 0.000
Gorai.004G012800 Gossypium raimondii Gorai.004G012800 I 0.000
Lus10040373.g Linum usitatissimum Lus10040373.g I 0.000
orange1.1g047530m.g Citrus sinensis orange1.1g047530m.g I 0.000
GLYMA12G07650 Glycine max GLYMA12G07650 I 0.000
SapurV1A.0023s0430 Salix purpurea SapurV1A.0023s0430 I 0.000
Thhalv10008781m.g Eutrema salsugineum Thhalv10008781m.g N 0.000
Gorai.012G185900 Gossypium raimondii Gorai.012G185900 N 0.000
evm.TU.contig_40341.2 Carica papaya evm.TU.contig_40341.2 N 0.000
Cucsa.358620 Cucumis sativus Cucsa.358620 N 0.000
Pavir.Ib01336 Panicum virgatum Pavir.Ib01336 N 0.000
cassava16668.m1 Manihot esculenta cassava16668.m1 N 0.000
Bo5g008590 Brassica oleracea Bo5g008590 N 0.000
Ca_02507 Cicer arietinum Ca_02507 N 0.000
VIT_13s0019g03830 Vitis vinifera VIT_13s0019g03830 N 0.000
VIT_13s0019g03720 Vitis vinifera VIT_13s0019g03720 N 0.000
Traes_4AS_669BAF6C7 Triticum aestivum Traes_4AS_669BAF6C7 N 0.000
Solyc04g050010.1 Solanum lycopersicum Solyc04g050010.1 N 0.000
OPUNC05G01610 Oryza punctata OPUNC05G01610 N 0.000
OLONG_014851 Oryza longistaminata OLONG_014851 N 0.000
OBART05G01640 Oryza barthii OBART05G01640 N 0.000
GSMUA_Achr3G17800_001 Musa acuminata GSMUA_Achr3G17800_001 N 0.000
GLYMA11G15810 Glycine max GLYMA11G15810 N 0.000
F775_02335 Aegilops tauschii F775_02335 N 0.000
Bra018675 Brassica rapa Bra018675 N 0.000