Bra016542 (Brassica rapa)
RWP-RK

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF02042 (RWP-RK) IPR003035 Bra016542 T319960_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
RKD2
M07249_2.00 		Arabidopsis thaliana
NHGWCBNTTCRDCTTCYHN
NDRGAAGHYGAANVGWCDN		 Dap-seq
OMalley et al.(2016)
RKD2_col_a 		0.714 0.714
RKD2
M07250_2.00 		Arabidopsis thaliana
GWCBBTTCRDMTTCC
GGAAKHYGAAVVGWC		 Dap-seq
OMalley et al.(2016)
RKD2_colamp_a 		0.714 0.714
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bra016542.1-P RWP-RK 128 176

Links

Other RWP-RK family TFs
Other Brassica rapa TFs

32 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
RKD2 Arabidopsis thaliana AT1G74480 D 0.714
cassava35166.m1 Manihot esculenta cassava35166.m1 I 0.755
PDK_20s1383532g001 Phoenix dactylifera PDK_20s1383532g001 I 0.714
chr4.CM0087.990.nc Lotus japonicus chr4.CM0087.990.nc I 0.714
Thhalv10019554m.g Eutrema salsugineum Thhalv10019554m.g I 0.735
MDP0000266172 Malus domestica MDP0000266172 I 0.735
MDP0000261199 Malus domestica MDP0000261199 I 0.735
Gorai.008G193400 Gossypium raimondii Gorai.008G193400 I 0.714
gene26015-v1.0-hybrid Fragaria vesca gene26015-v1.0-hybrid I 0.735
evm.TU.supercontig_423.7 Carica papaya evm.TU.supercontig_423.7 I 0.735
Carubv10021541m.g Capsella rubella Carubv10021541m.g I 0.714
Carubv10011133m.g Capsella rubella Carubv10011133m.g I 0.837
Cagra.4153s0001 Capsella grandiflora Cagra.4153s0001 I 0.837
Cagra.0402s0077 Capsella grandiflora Cagra.0402s0077 I 0.714
mg020279m Mimulus guttatus mg020279m I 0.735
Cucsa.197700 Cucumis sativus Cucsa.197700 I 0.714
AMTR_s00057p00091350 Amborella trichopoda AMTR_s00057p00091350 I 0.730
Pm024905 Prunus mume Pm024905 I 0.755
Cla019404 Citrullus lanatus Cla019404 I 0.735
Ca_27191 Cicer arietinum Ca_27191 I 0.714
VIT_17s0000g06250 Vitis vinifera VIT_17s0000g06250 I 0.714
TCM_014009 Theobroma cacao TCM_014009 I 0.714
Solyc03g116010.1 Solanum lycopersicum Solyc03g116010.1 I 0.755
PRUPE_ppa023107mg Prunus persica PRUPE_ppa023107mg I 0.755
MTR_3g435550 Medicago truncatula MTR_3g435550 I 0.776
MLOC_12609 Hordeum vulgare MLOC_12609 I 0.703
fgenesh2_kg.1__2057__AT1G18790.1 Arabidopsis lyrata fgenesh2_kg.1__2057__AT1G18790.1 I 0.816
fgenesh1_pg.C_scaffold_2001738 Arabidopsis lyrata fgenesh1_pg.C_scaffold_2001738 I 0.735
Bra008153 Brassica rapa Bra008153 I 0.714
Bo8g068090 Brassica oleracea Bo8g068090 I 1.000
RKD1 Arabidopsis thaliana AT1G18790 I 0.816
Thhalv10009845m.g Eutrema salsugineum Thhalv10009845m.g N 0.776