Cucsa.197700 (Cucumis sativus)
RWP-RK

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF02042 (RWP-RK) IPR003035 Cucsa.197700 T320957_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
RKD2
M07249_2.00 		Arabidopsis thaliana
NHGWCBNTTCRDCTTCYHN
NDRGAAGHYGAANVGWCDN		 Dap-seq
OMalley et al.(2016)
RKD2_col_a 		0.735 0.735
RKD2
M07250_2.00 		Arabidopsis thaliana
GWCBBTTCRDMTTCC
GGAAKHYGAAVVGWC		 Dap-seq
OMalley et al.(2016)
RKD2_colamp_a 		0.735 0.735
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Cucsa.197700.1 RWP-RK 66 114

Links

Other RWP-RK family TFs
Other Cucumis sativus TFs

54 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Cla019404 Citrullus lanatus Cla019404 I 0.898
TCM_014009 Theobroma cacao TCM_014009 I 0.878
evm.TU.supercontig_423.7 Carica papaya evm.TU.supercontig_423.7 I 0.857
MDP0000261199 Malus domestica MDP0000261199 I 0.837
Gorai.008G193400 Gossypium raimondii Gorai.008G193400 I 0.837
Pm024905 Prunus mume Pm024905 I 0.837
PRUPE_ppa023107mg Prunus persica PRUPE_ppa023107mg I 0.837
cassava35166.m1 Manihot esculenta cassava35166.m1 I 0.837
GLYMA05G01030 Glycine max GLYMA05G01030 I 0.816
MDP0000266172 Malus domestica MDP0000266172 I 0.816
Ca_13151 Cicer arietinum Ca_13151 I 0.816
VIT_17s0000g06250 Vitis vinifera VIT_17s0000g06250 I 0.816
orange1.1g036926m.g Citrus sinensis orange1.1g036926m.g I 0.800
chr4.CM0087.990.nc Lotus japonicus chr4.CM0087.990.nc I 0.796
gene26015-v1.0-hybrid Fragaria vesca gene26015-v1.0-hybrid I 0.796
Gorai.006G266900 Gossypium raimondii Gorai.006G266900 I 0.796
Bo7g064180 Brassica oleracea Bo7g064180 I 0.796
Ca_27191 Cicer arietinum Ca_27191 I 0.796
Bra012122 Brassica rapa Bra012122 I 0.796
mg020279m Mimulus guttatus mg020279m I 0.796
Solyc03g116010.1 Solanum lycopersicum Solyc03g116010.1 I 0.796
GLYMA04G33516 Glycine max GLYMA04G33516 I 0.776
Thhalv10019554m.g Eutrema salsugineum Thhalv10019554m.g I 0.776
30138.m004071 Ricinus communis 30138.m004071 I 0.776
fgenesh2_kg.1__2057__AT1G18790.1 Arabidopsis lyrata fgenesh2_kg.1__2057__AT1G18790.1 I 0.776
GLYMA17G10866 Glycine max GLYMA17G10866 I 0.776
RKD1 Arabidopsis thaliana AT1G18790 I 0.776
MLOC_12609 Hordeum vulgare MLOC_12609 I 0.757
AMTR_s00057p00091350 Amborella trichopoda AMTR_s00057p00091350 I 0.757
Carubv10021541m.g Capsella rubella Carubv10021541m.g I 0.755
mgf022310m Mimulus guttatus mgf022310m I 0.755
Thhalv10005560m.g Eutrema salsugineum Thhalv10005560m.g N 0.755
fgenesh1_pg.C_scaffold_2001738 Arabidopsis lyrata fgenesh1_pg.C_scaffold_2001738 I 0.755
GLYMA06G20881 Glycine max GLYMA06G20881 I 0.755
MTR_3g435550 Medicago truncatula MTR_3g435550 I 0.755
Cagra.0402s0077 Capsella grandiflora Cagra.0402s0077 I 0.755
Cagra.4153s0001 Capsella grandiflora Cagra.4153s0001 I 0.755
Carubv10011133m.g Capsella rubella Carubv10011133m.g I 0.755
scaffold_103100001.1 Arabidopsis lyrata scaffold_103100001.1 I 0.735
Bra015907 Brassica rapa Bra015907 I 0.735
Bra008153 Brassica rapa Bra008153 I 0.735
fgenesh1_pg.C_scaffold_2000886 Arabidopsis lyrata fgenesh1_pg.C_scaffold_2000886 I 0.735
fgenesh1_pg.C_scaffold_8002648 Arabidopsis lyrata fgenesh1_pg.C_scaffold_8002648 I 0.735
RKD2 Arabidopsis thaliana AT1G74480 D 0.735
Bostr.3288s0094 Boechera stricta Bostr.3288s0094 I 0.735
Si020172m.g Setaria italica Si020172m.g I 0.730
Lus10034456.g Linum usitatissimum Lus10034456.g I 0.714
TRIUR3_19503 Triticum urartu TRIUR3_19503 I 0.714
Bo8g068090 Brassica oleracea Bo8g068090 I 0.714
RKD3 Arabidopsis thaliana AT5G66990 N 0.714
Bra016542 Brassica rapa Bra016542 I 0.714
GRMZM2G392306 Zea mays GRMZM2G392306 I 0.714
MLOC_59560 Hordeum vulgare MLOC_59560 I 0.714
Bostr.0568s0123 Boechera stricta Bostr.0568s0123 N 0.714