CIS-BP Database: Catalog of Inferred Sequence Binding Preferences

TF Information

MLOC_9982 *(Hordeum vulgare)* RWP-RK
Pfam ID	Interpro ID	Gene ID	CIS-BP ID	Sequence source	Animal TF db
PF02042 (RWP-RK)	IPR003035	MLOC_9982	T320536_2.00	Ensembl (2018-Dec-8)	Link out
Directly determined binding motifs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
No direct experiments
Motifs from related TFs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
NLP7 M07251_2.00	Arabidopsis thaliana	WNDTGNCYYTTSRDD	HHYSAARRGNCAHNW	Dap-seq OMalley et al.(2016) NLP7_col_a	0.783	0.783
NLP4 M07248_2.00	Arabidopsis thaliana	NNHNNBTGCTGYHNN	NNDRCAGCAVNNDNN	Dap-seq OMalley et al.(2016) AtNLP4_col_b	0.857	0.857
For this family, TFs with SR scores > 0.700* will likely have a similar motif*

DNA Binding Domains

Protein ID	Domain	From	To	Sequence
MLOC_9982.1	RWP-RK	205	227	TVSLPVLRQYFAGSLKDAARSLG
MLOC_9982.2	RWP-RK	690	738	TVSLPVLRQYFAGSLKDAARSLGVCPTTLKRICRQHGINRWPSRKIKKV
MLOC_9982.3	RWP-RK	628	676	TVSLPVLRQYFAGSLKDAARSLGVCPTTLKRICRQHGINRWPSRKIKKV

Links
Other RWP-RK family TFs
Other *Hordeum vulgare* TFs