Pavir.Db01233 (Panicum virgatum)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00046 (Homeobox) IPR001356 Pavir.Db01233 T229237_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.Db01233.1.p Homeodomain 302 355
Pavir.Db01233.2.p Homeodomain 258 311
Pavir.Db01233.3.p Homeodomain 258 311

Links

Other Homeodomain family TFs
Other Panicum virgatum TFs

26 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Sb10g023400 Sorghum bicolor Sb10g023400 N 0.867
Pavir.Da00552 Panicum virgatum Pavir.Da00552 N 0.867
GRMZM2G163641 Zea mays GRMZM2G163641 N 0.859
OPUNC06G18430 Oryza punctata OPUNC06G18430 N 0.773
BGIOSGA023211 Oryza indica BGIOSGA023211 N 0.771
OB06G27850 Oryza brachyantha OB06G27850 N 0.771
OBART06G20210 Oryza barthii OBART06G20210 N 0.771
OGLUM06G21270 Oryza glumaepatula OGLUM06G21270 N 0.771
OLONG_013537 Oryza longistaminata OLONG_013537 N 0.771
ONIVA06G23990 Oryza nivara ONIVA06G23990 N 0.771
ORUFI06G21620 Oryza rufipogon ORUFI06G21620 N 0.771
OS06G0601000 Oryza sativa OS06G0601000 N 0.771
BRADI1G58817 Brachypodium distachyon BRADI1G58817 N 0.746
MLOC_45474 Hordeum vulgare MLOC_45474 N 0.742
Traes_7AL_0FFE02C4C Triticum aestivum Traes_7AL_0FFE02C4C N 0.742
Traes_7BL_E2E7AA383 Triticum aestivum Traes_7BL_E2E7AA383 N 0.742
Traes_7DL_613F5240E Triticum aestivum Traes_7DL_613F5240E N 0.742
BRADI1G36770 Brachypodium distachyon BRADI1G36770 N 0.739
Si006856m.g Setaria italica Si006856m.g N 0.728
mgf000632m Mimulus guttatus mgf000632m N 0.717
OMERI06G20820 Oryza meridionalis OMERI06G20820 N 0.716
MTR_3g107530 Medicago truncatula MTR_3g107530 N 0.637
LPERR06G16850 Leersia perrieri LPERR06G16850 N 0.635
POPTR_0006s26790 Populus trichocarpa POPTR_0006s26790 N 0.633
evm.TU.supercontig_115.10 Carica papaya evm.TU.supercontig_115.10 N 0.615