OLONG_016325 (Oryza longistaminata)
RWP-RK

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF02042 (RWP-RK) IPR003035 OLONG_016325 T320593_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
RKD2
M07249_2.00 		Arabidopsis thaliana
NHGWCBNTTCRDCTTCYHN
NDRGAAGHYGAANVGWCDN		 Dap-seq
OMalley et al.(2016)
RKD2_col_a 		0.735 0.735
RKD2
M07250_2.00 		Arabidopsis thaliana
GWCBBTTCRDMTTCC
GGAAKHYGAAVVGWC		 Dap-seq
OMalley et al.(2016)
RKD2_colamp_a 		0.735 0.735
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
OLONG_016325-R1 RWP-RK 115 163

Links

Other RWP-RK family TFs
Other Oryza longistaminata TFs

48 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Lus10008316.g Linum usitatissimum Lus10008316.g N 0.000
cassava44367.m1 Manihot esculenta cassava44367.m1 N 0.000
Cucsa.365230 Cucumis sativus Cucsa.365230 N 0.000
Aquca_014_00175 Aquilegia coerulea Aquca_014_00175 N 0.000
Eucgr.L03490 Eucalyptus grandis Eucgr.L03490 N 0.000
evm.TU.supercontig_36.32 Carica papaya evm.TU.supercontig_36.32 N 0.000
gene11137-v1.0-hybrid Fragaria vesca gene11137-v1.0-hybrid N 0.000
Gorai.009G244200 Gossypium raimondii Gorai.009G244200 N 0.000
Gorai.010G048800 Gossypium raimondii Gorai.010G048800 N 0.000
cassava32027.m1 Manihot esculenta cassava32027.m1 N 0.000
Lus10028056.g Linum usitatissimum Lus10028056.g N 0.000
MDP0000319342 Malus domestica MDP0000319342 N 0.000
MDP0000884524 Malus domestica MDP0000884524 N 0.000
orange1.1g011012m.g Citrus sinensis orange1.1g011012m.g N 0.000
SapurV1A.0010s0900 Salix purpurea SapurV1A.0010s0900 N 0.000
SapurV1A.0105s0110 Salix purpurea SapurV1A.0105s0110 N 0.000
LjT15C06.70.nc Lotus japonicus LjT15C06.70.nc N 0.000
LjT26J05.10.nc Lotus japonicus LjT26J05.10.nc N 0.000
Solyc11g013150.1 Solanum lycopersicum Solyc11g013150.1 N 0.000
GLYMA06G11610 Glycine max GLYMA06G11610 N 0.000
GLYMA13G02840 Glycine max GLYMA13G02840 N 0.000
MTR_3g072710 Medicago truncatula MTR_3g072710 N 0.000
MTR_5g058860 Medicago truncatula MTR_5g058860 N 0.000
PGSC0003DMG400012071 Solanum tuberosum PGSC0003DMG400012071 N 0.000
POPTR_0002s08660 Populus trichocarpa POPTR_0002s08660 N 0.000
POPTR_0005s15900 Populus trichocarpa POPTR_0005s15900 N 0.000
PRUPE_ppa018977mg Prunus persica PRUPE_ppa018977mg N 0.000
GLYMA04G43090 Glycine max GLYMA04G43090 N 0.000
TCM_035069 Theobroma cacao TCM_035069 N 0.000
VIT_18s0001g03310 Vitis vinifera VIT_18s0001g03310 N 0.000
Ca_23494 Cicer arietinum Ca_23494 N 0.000
Ca_26279 Cicer arietinum Ca_26279 N 0.000
Cla014166 Citrullus lanatus Cla014166 N 0.000
Pm004863 Prunus mume Pm004863 N 0.000
29908.m006159 Ricinus communis 29908.m006159 N 0.000