CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
Home
Tools
View cart
Bulk downloads
Database stats
Contact us
Help
Update Log
FAQ
Links
How to cite
deaf1
(
Oryzias latipes
)
SAND
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF01342 (SAND)
IPR000770
ENSORLG00000019407
T321848_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
DEAF1
M11266_2.00
Pan troglodytes
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$DEAF1_01
0.944
0.763
DEAF1
M11267_2.00
Pan troglodytes
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$DEAF1_02
0.944
0.763
For this family, TFs with SR scores >
0.843
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSORLP00000024165
SAND
147
222
SVYNNELPVRCRNTSGVLHKLRLGSGGKGRCIKHNQQWFTPTEFEALSGRASSKDWKRSIRYAGRPLLCLIQERIL
Links
Other
SAND
family TFs
Other
Oryzias latipes
TFs
80 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Carubv10023033m.g
Capsella rubella
Carubv10023033m.g
N
chr4.CM0042.1400.nc
Lotus japonicus
chr4.CM0042.1400.nc
N
PK11431.1
Cannabis sativa
PK11431.1
N
Thhalv10001406m.g
Eutrema salsugineum
Thhalv10001406m.g
N
SapurV1A.0596s0020
Salix purpurea
SapurV1A.0596s0020
N
SapurV1A.0287s0020
Salix purpurea
SapurV1A.0287s0020
N
SapurV1A.0179s0360
Salix purpurea
SapurV1A.0179s0360
N
orange1.1g048759m.g
Citrus sinensis
orange1.1g048759m.g
N
Gorai.003G090600
Gossypium raimondii
Gorai.003G090600
N
evm.TU.supercontig_151.12
Carica papaya
evm.TU.supercontig_151.12
N
Eucgr.F02687
Eucalyptus grandis
Eucgr.F02687
N
Ciclev10000930m.g
Citrus clementina
Ciclev10000930m.g
N
Bo4g021230
Brassica oleracea
Bo4g021230
N
Cagra.1517s0032
Capsella grandiflora
Cagra.1517s0032
N
Bostr.25993s0368
Boechera stricta
Bostr.25993s0368
N
Aquca_009_00307
Aquilegia coerulea
Aquca_009_00307
N
mgf008193m
Mimulus guttatus
mgf008193m
N
cassava22183.valid.m1
Manihot esculenta
cassava22183.valid.m1
N
Cla017427
Citrullus lanatus
Cla017427
N
Ca_10412
Cicer arietinum
Ca_10412
N
TCM_001393
Theobroma cacao
TCM_001393
N
scaffold_403309.1
Arabidopsis lyrata
scaffold_403309.1
N
POPTR_0013s12100
Populus trichocarpa
POPTR_0013s12100
N
Bra004800
Brassica rapa
Bra004800
N