Ciclev10004348m.g (Citrus clementina)
SBP

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03110 (SBP) IPR004333 Ciclev10004348m.g T323428_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
SPL7
M02476_2.00 		Arabidopsis thaliana
DGTACKDNN
NNHMGTACH		 PBM
Weirauch et al.(2014)
pTH7288 		0.975 0.907
SPL7
M00888_2.00 		Arabidopsis thaliana
GGRGDAAAGG
CCTTTHCYCC		 PBM
Franco-Zorrilla et al.(2014)
SPL7 		0.975 0.907
For this family, TFs with SR scores > 0.885 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Ciclev10004348m SBP 131 205
Ciclev10004528m SBP 19 49

Links

Other SBP family TFs
Other Citrus clementina TFs

65 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
SPL7 Arabidopsis thaliana AT5G18830 D 0.975
Cagra.0263s0012 Capsella grandiflora Cagra.0263s0012 I 0.974
TCM_021101 Theobroma cacao TCM_021101 I 0.976
Bostr.26527s0326 Boechera stricta Bostr.26527s0326 I 0.974
Aquca_026_00098 Aquilegia coerulea Aquca_026_00098 I 0.943
mgf004695m Mimulus guttatus mgf004695m I 0.967
Cucsa.253690 Cucumis sativus Cucsa.253690 I 0.976
cassava7956.valid.m1 Manihot esculenta cassava7956.valid.m1 I 0.981
cassava7955.valid.m1 Manihot esculenta cassava7955.valid.m1 I 0.981
cassava1985.valid.m1 Manihot esculenta cassava1985.valid.m1 I 0.952
29726.m003959 Ricinus communis 29726.m003959 I 0.977
Pm008092 Prunus mume Pm008092 I 0.955
Cla022022 Citrullus lanatus Cla022022 I 0.976
Ca_00550 Cicer arietinum Ca_00550 I 0.964
SPL7 Vitis vinifera VIT_05s0020g02160 I 0.979
Traes_1BL_8709BB152 Triticum aestivum Traes_1BL_8709BB152 I 0.977
PK29723.1 Cannabis sativa PK29723.1 I 0.961
Carubv10002913m.g Capsella rubella Carubv10002913m.g I 0.974
Eucgr.B01228 Eucalyptus grandis Eucgr.B01228 I 0.978
gene06692-v1.0-hybrid Fragaria vesca gene06692-v1.0-hybrid I 0.959
Gorai.005G056500 Gossypium raimondii Gorai.005G056500 I 0.965
Gorai.011G183800 Gossypium raimondii Gorai.011G183800 I 0.970
Lus10012782.g Linum usitatissimum Lus10012782.g I 0.972
Lus10033993.g Linum usitatissimum Lus10033993.g I 0.972
MDP0000195461 Malus domestica MDP0000195461 I 0.945
MDP0000271587 Malus domestica MDP0000271587 I 0.951
orange1.1g003787m.g Citrus sinensis orange1.1g003787m.g I 0.983
Pavir.J00965 Panicum virgatum Pavir.J00965 I 0.978
Pavir.J03653 Panicum virgatum Pavir.J03653 I 0.975
SapurV1A.0152s0370 Salix purpurea SapurV1A.0152s0370 I 0.957
SapurV1A.0407s0040 Salix purpurea SapurV1A.0407s0040 I 0.934
Thhalv10012721m.g Eutrema salsugineum Thhalv10012721m.g I 0.977
AMTR_s00197p00030350 Amborella trichopoda AMTR_s00197p00030350 I 0.977
OBART05G16150 Oryza barthii OBART05G16150 I 0.976
Bo00629s160 Brassica oleracea Bo00629s160 I 0.955
Bo9g154530 Brassica oleracea Bo9g154530 I 0.972
Bra002188 Brassica rapa Bra002188 I 0.972
Bra023695 Brassica rapa Bra023695 I 0.955
BRADI2G25580 Brachypodium distachyon BRADI2G25580 I 0.961
F775_04392 Aegilops tauschii F775_04392 I 0.972
GLYMA13G28460 Glycine max GLYMA13G28460 I 0.977
GRMZM2G109354 Zea mays GRMZM2G109354 I 0.976
GSMUA_Achr3G09190_001 Musa acuminata GSMUA_Achr3G09190_001 I 0.973
GSMUA_Achr3G23780_001 Musa acuminata GSMUA_Achr3G23780_001 I 0.976
GSMUA_Achr5G26880_001 Musa acuminata GSMUA_Achr5G26880_001 I 0.961
GSMUA_Achr9G17440_001 Musa acuminata GSMUA_Achr9G17440_001 I 0.976
LPERR05G12780 Leersia perrieri LPERR05G12780 I 0.976
MTR_2g020620 Medicago truncatula MTR_2g020620 I 0.965
OB05G24080 Oryza brachyantha OB05G24080 I 0.976
Solyc01g080670.2 Solanum lycopersicum Solyc01g080670.2 I 0.981
OGLUM05G17090 Oryza glumaepatula OGLUM05G17090 I 0.976
OLONG_015968 Oryza longistaminata OLONG_015968 I 0.976
ONIVA05G16770 Oryza nivara ONIVA05G16770 I 0.976
OPUNC05G14270 Oryza punctata OPUNC05G14270 I 0.975
ORUFI05G17320 Oryza rufipogon ORUFI05G17320 I 0.976
SPL9 Oryza sativa OS05G0408200 I 0.976
PGSC0003DMG401006284 Solanum tuberosum PGSC0003DMG401006284 I 0.981
POPTR_0008s20160 Populus trichocarpa POPTR_0008s20160 I 0.966
POPTR_0010s02710 Populus trichocarpa POPTR_0010s02710 I 0.957
PRUPE_ppa001613mg Prunus persica PRUPE_ppa001613mg I 0.955
Sb09g020110 Sorghum bicolor Sb09g020110 I 0.976
SPL7 Arabidopsis lyrata scaffold_601959.1 I 0.977
SELMODRAFT_49859 Selaginella moellendorffii SELMODRAFT_49859 I 0.909
SELMODRAFT_49860 Selaginella moellendorffii SELMODRAFT_49860 I 0.907
Si021754m.g Setaria italica Si021754m.g I 0.976