smarce1 (Tetraodon nigroviridis)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00505 (HMG_box) IPR000910 ENSTNIG00000014009 T329276_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
ENSTNIP00000017017 Sox 64 132

Links

Other Sox family TFs
Other Tetraodon nigroviridis TFs

157 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
CpipJ_CPIJ007400 Culex pipiens CpipJ_CPIJ007400 N 0.688
CpipJ_CPIJ018416 Culex pipiens CpipJ_CPIJ018416 N 0.688
WUBG_07283 Wuchereria bancrofti WUBG_07283 N 0.492
AAEL010903 Aedes aegypti AAEL010903 N 0.688
ACEP21543 Atta cephalotes ACEP21543 N 0.715
ACYPI008028 Acyrthosiphon pisum ACYPI008028 N 0.664
ADAC004863 Anopheles darlingi ADAC004863 N 0.641
AGAP001994 Anopheles gambiae AGAP001994 N 0.641
Aqu1.224100 Amphimedon queenslandica Aqu1.224100 N 0.491
BGIBMGA009228 Bombyx mori BGIBMGA009228 N 0.592
Bm7076 Brugia malayi Bm7076 N 0.492
CapteG156119 Capitella teleta CapteG156119 N 0.668
CBG09815 Caenorhabditis briggsae CBG09815 N 0.442
CPIJ007400 Culex quinquefasciatus CPIJ007400 N 0.688
CPIJ018416 Culex quinquefasciatus CPIJ018416 N 0.688
DAPPUDRAFT_305068 Daphnia pulex DAPPUDRAFT_305068 N 0.713
ENSCING00000007774 Ciona intestinalis ENSCING00000007774 N 0.675
ENSCJAG00000006608 Callithrix jacchus ENSCJAG00000006608 N 0.642
ENSCSAVG00000010367 Ciona savignyi ENSCSAVG00000010367 N 0.622
ENSFCAG00000026463 Felis catus ENSFCAG00000026463 N 0.665
SMARCE1 Gasterosteus aculeatus ENSGACG00000018114 N 0.704
ENSGGOG00000024929 Gorilla gorilla ENSGGOG00000024929 N 0.643
ENSGGOG00000026277 Gorilla gorilla ENSGGOG00000026277 N 0.593
ENSGMOG00000002045 Gadus morhua ENSGMOG00000002045 N 0.735
ENSOCUG00000016848 Oryctolagus cuniculus ENSOCUG00000016848 N 0.704
ENSONIG00000006293 Oreochromis niloticus ENSONIG00000006293 N 0.741
smarce1 Oryzias latipes ENSORLG00000018629 N 0.735
ENSPFOG00000009890 Poecilia formosa ENSPFOG00000009890 N 0.735
ENSPFOG00000019561 Poecilia formosa ENSPFOG00000019561 N 0.735
ENSPPYG00000012585 Pongo abelii ENSPPYG00000012585 N 0.618
AC123471.1 Rattus norvegicus ENSRNOG00000018377 N 0.700
smarce1 Takifugu rubripes ENSTRUG00000012899 N 0.741
ENSXMAG00000002642 Xiphophorus maculatus ENSXMAG00000002642 N 0.735
dalao Drosophila melanogaster FBgn0030093 N 0.593
GF19131 Drosophila ananassae FBgn0096142 N 0.591
GG18291 Drosophila erecta FBgn0110507 N 0.593
GH12291 Drosophila grimshawi FBgn0119770 N 0.591
GI15536 Drosophila mojavensis FBgn0138285 N 0.559
GL26801 Drosophila persimilis FBgn0164382 N 0.630
GM13722 Drosophila sechellia FBgn0168653 N 0.593
GD16931 Drosophila simulans FBgn0188511 N 0.593
GJ14880 Drosophila virilis FBgn0202084 N 0.553
GK25765 Drosophila willistoni FBgn0227724 N 0.591
GE15824 Drosophila yakuba FBgn0233388 N 0.593
GA26137 Drosophila pseudoobscura FBgn0247513 N 0.630
GB50847 Apis mellifera GB50847 N 0.715
HelroG188630 Helobdella robusta HelroG188630 N 0.679
HMEL010720 Heliconius melpomene HMEL010720 N 0.624
ISCW021016 Ixodes scapularis ISCW021016 N 0.701
KGM_12870 Danaus plexippus KGM_12870 N 0.624
L798_00593 Zootermopsis nevadensis L798_00593 N 0.713
LOAG_01279 Loa loa LOAG_01279 N 0.492
LotgiG111061 Lottia gigantea LotgiG111061 N 0.602
MCINX003696 Melitaea cinxia MCINX003696 N 0.421
ML45008a Mnemiopsis leidyi ML45008a N 0.467
NEMVEDRAFT_v1g177453 Nematostella vectensis NEMVEDRAFT_v1g177453 N 0.704
NV11999 Nasonia vitripennis NV11999 N 0.713
PPA02543 Pristionchus pacificus PPA02543 N 0.433
SMAR004982 Strigamia maritima SMAR004982 N 0.701
Smp_154640 Schistosoma mansoni Smp_154640 N 0.632
SPU_009282 Strongylocentrotus purpuratus SPU_009282 N 0.678
TC007745 Tribolium castaneum TC007745 N 0.713
TriadG53566 Trichoplax adhaerens TriadG53566 N 0.595
swsn-3 Caenorhabditis elegans WBGene00022182 N 0.442
WBGene00245293 Onchocerca volvulus WBGene00245293 N 0.492
YQE_02381 Dendroctonus ponderosae YQE_02381 N 0.715
Cflo_00654--XP_395543.3_APIME Camponotus floridanus Cflo_00654--XP_395543.3_APIME N 0.715
Hsal_01302--XP_395543.3_APIME Harpegnathos saltator Hsal_01302--XP_395543.3_APIME N 0.715
fgenesh2_pg.scaffold_137000001 Branchiostoma floridae fgenesh2_pg.scaffold_137000001 N 0.607
Sakowv30017721m.g Saccoglossus kowalevskii Sakowv30017721m.g N 0.676
AAH41216 Xenopus laevis AAH41216 N 0.710
CLEC001104 Cimex lectularius CLEC001104 N 0.667
CLEC007658 Cimex lectularius CLEC007658 N 0.479
CLEC009203 Cimex lectularius CLEC009203 N 0.701
HHAL002088-PA Halyomorpha halys HHAL002088-PA N 0.719
HHAL007378-PA Halyomorpha halys HHAL007378-PA N 0.692
LCUP013669 Lucilia cuprina LCUP013669 N 0.619
LDEC003494 Leptinotarsa decemlineata LDEC003494 N 0.713
Sjc_0000110 Schistosoma japonicum Sjc_0000110 N 0.632
SMU15003232 Schmidtea mediterranea SMU15003232 N 0.422
SMU15005679 Schmidtea mediterranea SMU15005679 N 0.642
SMU15025606 Schmidtea mediterranea SMU15025606 N 0.614
Minc14081 Meloidogyne incognita Minc14081 N 0.454
XP_002158206.1 Hydra magnipapillata XP_002158206.1 N 0.538
AALB002196 Anopheles albimanus AALB002196 N 0.641
AARA006951 Anopheles arabiensis AARA006951 N 0.641
AATE020748 Anopheles atroparvus AATE020748 N 0.641
ACHR000824 Anopheles christyi ACHR000824 N 0.641
ACOM023536 Anopheles coluzzii ACOM023536 N 0.641
ACUA002517 Anopheles culicifacies ACUA002517 N 0.641
ADIR010513 Anopheles dirus ADIR010513 N 0.641
AEPI007457 Anopheles epiroticus AEPI007457 N 0.641
AFAF004631 Anopheles farauti AFAF004631 N 0.641
AFUN008276 Anopheles funestus AFUN008276 N 0.641
AMAM007470 Anopheles maculatus AMAM007470 N 0.641
AMEC010472 Anopheles melas AMEC010472 N 0.641
AMEM015770 Anopheles merus AMEM015770 N 0.641
AMIN003302 Anopheles minimus AMIN003302 N 0.641
AQUA007127 Anopheles quadriannulatus AQUA007127 N 0.641
ASIS021704 Anopheles sinensis ASIS021704 N 0.641
ASTEI00336 Anopheles stephensi ASTEI00336 N 0.641
BGLB013830 Biomphalaria glabrata BGLB013830 N 0.422
LLOJ006040 Lutzomyia longipalpis LLOJ006040 N 0.695
MDOA009352 Musca domestica MDOA009352 N 0.591
PPAI002058 Phlebotomus papatasi PPAI002058 N 0.720
A_05744 Schistosoma haematobium A_05744 N 0.632
ACAC_0000207501 Angiostrongylus cantonensis ACAC_0000207501 N 0.509
ALUE_0000987201 Ascaris lumbricoides ALUE_0000987201 N 0.467
ANCCAN_03785 Ancylostoma caninum ANCCAN_03785 N 0.509
ANCCAN_09575 Ancylostoma caninum ANCCAN_09575 N 0.509
ANCCEY_02937 Ancylostoma ceylanicum ANCCEY_02937 N 0.509
ANCDUO_12071 Ancylostoma duodenale ANCDUO_12071 N 0.509
ASIM_0001578601 Anisakis simplex ASIM_0001578601 N 0.467
ASIM_0001639001 Anisakis simplex ASIM_0001639001 N 0.467
ASU_02248 Ascaris suum ASU_02248 N 0.467
csin103376 Clonorchis sinensis csin103376 N 0.563
D915_15883 Fasciola hepatica D915_15883 N 0.632
D918_01415 Trichuris suis D918_01415 N 0.599
DME_0000063901 Dracunculus medinensis DME_0000063901 N 0.499
ECANG7_05376 Echinococcus canadensis ECANG7_05376 N 0.642
EEL_0000522201 Elaeophora elaphi EEL_0000522201 N 0.492
EmuJ_000113200 Echinococcus multilocularis EmuJ_000113200 N 0.642
EVEC_0000378901 Enterobius vermicularis EVEC_0000378901 N 0.513
HCOI00022200 Haemonchus contortus HCOI00022200 N 0.509
HCOI00569400 Haemonchus contortus HCOI00569400 N 0.509
HDID_0000207001 Hymenolepis diminuta HDID_0000207001 N 0.634
HPBE_0000083501 Heligmosomoides bakeri HPBE_0000083501 N 0.509
HPLM_0001658301 Haemonchus placei HPLM_0001658301 N 0.509
L889_g3706 Steinernema feltiae L889_g3706 N 0.467
maker-nMf.1.1.scaf01126-augustus-gene-0.13 Meloidogyne floridensis maker-nMf.1.1.scaf01126-augustus-gene-0.13 N 0.454
MCOS_0000928101 Mesocestoides corti MCOS_0000928101 N 0.634
MhA1_Contig1809.frz3.gene8 Meloidogyne hapla MhA1_Contig1809.frz3.gene8 N 0.481
nAv.1.0.1.g03900 Acanthocheilonema viteae nAv.1.0.1.g03900 N 0.492
nDi.2.2.2.g02092 Dirofilaria immitis nDi.2.2.2.g02092 N 0.492
NECAME_16117 Necator americanus NECAME_16117 N 0.509
nLs.2.1.2.g01047 Litomosoides sigmodontis nLs.2.1.2.g01047 N 0.492
nOo.2.0.1.g01360 Onchocerca ochengi nOo.2.0.1.g01360 N 0.492
OESDEN_12607 Oesophagostomum dentatum OESDEN_12607 N 0.509
OESDEN_21929 Oesophagostomum dentatum OESDEN_21929 N 0.509
OFLC_0001285101 Onchocerca flexuosa OFLC_0001285101 N 0.492
PXEA_0001727801 Protopolystoma xenopodis PXEA_0001727801 N 0.639
RSKR_0000347900 Rhabditophanes kr3021 RSKR_0000347900 N 0.455
scaffold237-EXSNAP2012.36 Pristionchus exspectatus scaffold237-EXSNAP2012.36 N 0.433
SCUD_0000923501 Schistosoma curassoni SCUD_0000923501 N 0.632
SMTD_0000014601 Schistosoma mattheei SMTD_0000014601 N 0.632
SMUV_0000644601 Syphacia muris SMUV_0000644601 N 0.467
snap_masked-nMf.1.1.scaf27159-processed-gene-0.2 Meloidogyne floridensis snap_masked-nMf.1.1.scaf27159-processed-gene-0.2 N 0.454
SROB_0000607501 Schistosoma rodhaini SROB_0000607501 N 0.632
SSLN_0001888901 Schistocephalus solidus SSLN_0001888901 N 0.556
SVUK_0000819801 Strongylus vulgaris SVUK_0000819801 N 0.509
T265_02983 Opisthorchis viverrini T265_02983 N 0.632
TASK_0000875901 Taenia asiatica TASK_0000875901 N 0.642
TCLT_0000145301 Thelazia callipaeda TCLT_0000145301 N 0.492
TELCIR_14354 Teladorsagia circumcincta TELCIR_14354 N 0.509
TMUE_s0023006500 Trichuris muris TMUE_s0023006500 N 0.599
TsM_000047400 Taenia solium TsM_000047400 N 0.642
TTRE_0000149701 Trichuris trichiura TTRE_0000149701 N 0.599