RSKR_0000605700 (Rhabditophanes kr3021)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00505 (HMG_box) IPR000910 RSKR_0000605700 T336866_2.00 WormBase:ParaSite (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
RSKR_0000605700.1 Sox 9 78
RSKR_0000605700.1 Sox 96 164

Links

Other Sox family TFs
Other Rhabditophanes kr3021 TFs

112 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
RBE Arabidopsis thaliana AT5G06070 D
Al_scaffold_0409_3 Arabidopsis lyrata Al_scaffold_0409_3 I
ZFP11 Arabidopsis thaliana AT2G42410 I
SUP Arabidopsis thaliana AT3G23130 I
AT4G17810 Arabidopsis thaliana AT4G17810 I
BGIOSGA015610 Oryza indica BGIOSGA015610 I
BGIOSGA018378 Oryza indica BGIOSGA018378 I
BGIOSGA033510 Oryza indica BGIOSGA033510 I
Bo1g017920 Brassica oleracea Bo1g017920 I
Bo1g102390 Brassica oleracea Bo1g102390 I
Bo3g003640 Brassica oleracea Bo3g003640 I
Bo9g176590 Brassica oleracea Bo9g176590 I
Bra005874 Brassica rapa Bra005874 I
Bra009160 Brassica rapa Bra009160 I
Bra013257 Brassica rapa Bra013257 I
Bra023759 Brassica rapa Bra023759 I
F775_00917 Aegilops tauschii F775_00917 I
F775_21953 Aegilops tauschii F775_21953 I
SUP Arabidopsis lyrata fgenesh2_kg.3__2524__AT3G23130.1 I
RBE Arabidopsis lyrata fgenesh2_kg.6__542__AT5G06070.1 I
GLYMA11G34285 Glycine max GLYMA11G34285 I
GLYMA12G35930 Glycine max GLYMA12G35930 I
GLYMA13G34450 Glycine max GLYMA13G34450 I
GRMZM2G000126 Zea mays GRMZM2G000126 I
GRMZM2G137736 Zea mays GRMZM2G137736 I
GRMZM2G344974 Zea mays GRMZM2G344974 I
GSMUA_Achr7G26850_001 Musa acuminata GSMUA_Achr7G26850_001 I
LPERR04G01660 Leersia perrieri LPERR04G01660 I
LPERR05G08090 Leersia perrieri LPERR05G08090 I
MLOC_76482 Hordeum vulgare MLOC_76482 I
MTR_1g070265 Medicago truncatula MTR_1g070265 I
OB02G10110 Oryza brachyantha OB02G10110 I
OB02G44430 Oryza brachyantha OB02G44430 I
OB04G12040 Oryza brachyantha OB04G12040 I
OB05G18710 Oryza brachyantha OB05G18710 I
OBART04G02370 Oryza barthii OBART04G02370 I
OBART05G10090 Oryza barthii OBART05G10090 I
OBART11G23770 Oryza barthii OBART11G23770 I
OGLUM04G02100 Oryza glumaepatula OGLUM04G02100 I
OGLUM05G10360 Oryza glumaepatula OGLUM05G10360 I
OGLUM11G22950 Oryza glumaepatula OGLUM11G22950 I
OLONG_005038 Oryza longistaminata OLONG_005038 I
OLONG_022667 Oryza longistaminata OLONG_022667 I
OLONG_023754 Oryza longistaminata OLONG_023754 I
OMERI04G02610 Oryza meridionalis OMERI04G02610 I
OMERI07G13080 Oryza meridionalis OMERI07G13080 I
ONIVA04G01910 Oryza nivara ONIVA04G01910 I
ONIVA06G26970 Oryza nivara ONIVA06G26970 I
ONIVA11G23290 Oryza nivara ONIVA11G23290 I
OPUNC05G08760 Oryza punctata OPUNC05G08760 I
OPUNC11G05640 Oryza punctata OPUNC11G05640 I
ORGLA05G0088100 Oryza glaberrima ORGLA05G0088100 I
ORUFI04G03150 Oryza rufipogon ORUFI04G03150 I
ORUFI05G10920 Oryza rufipogon ORUFI05G10920 I
ORUFI11G25670 Oryza rufipogon ORUFI11G25670 I
OS04G0168100 Oryza sativa OS04G0168100 I
OS05G0286100 Oryza sativa OS05G0286100 I
OS11G0707300 Oryza sativa OS11G0707300 I
PGSC0003DMG400017271 Solanum tuberosum PGSC0003DMG400017271 I
PGSC0003DMG400040225 Solanum tuberosum PGSC0003DMG400040225 I
POPTR_0002s04260 Populus trichocarpa POPTR_0002s04260 I
POPTR_0008s16390 Populus trichocarpa POPTR_0008s16390 I
POPTR_0010s08530 Populus trichocarpa POPTR_0010s08530 I
PRUPE_ppa015007mg Prunus persica PRUPE_ppa015007mg I
Sb04g037590 Sorghum bicolor Sb04g037590 I
Sb06g001730 Sorghum bicolor Sb06g001730 I
scaffold_403098.1 Arabidopsis lyrata scaffold_403098.1 I
Si019050m.g Setaria italica Si019050m.g I
Si019563m.g Setaria italica Si019563m.g I
Si024070m.g Setaria italica Si024070m.g I
Solyc06g053720.1 Solanum lycopersicum Solyc06g053720.1 I
Solyc09g089590.1 Solanum lycopersicum Solyc09g089590.1 I
TCM_021875 Theobroma cacao TCM_021875 I
Traes_1AL_80D0BD0DC Triticum aestivum Traes_1AL_80D0BD0DC I
Traes_1BL_4026DC5011 Triticum aestivum Traes_1BL_4026DC5011 I
TRIUR3_03721 Triticum urartu TRIUR3_03721 I
TRIUR3_04794 Triticum urartu TRIUR3_04794 I
VIT_05s0049g00070 Vitis vinifera VIT_05s0049g00070 I
VIT_05s0049g00080 Vitis vinifera VIT_05s0049g00080 I
Ca_12901 Cicer arietinum Ca_12901 I
Cla008944 Citrullus lanatus Cla008944 I
Cla021878 Citrullus lanatus Cla021878 I
Pm009420 Prunus mume Pm009420 I
29603.m000536 Ricinus communis 29603.m000536 I
cassava14614.m1 Manihot esculenta cassava14614.m1 I
cassava22028.m1 Manihot esculenta cassava22028.m1 I
cassava3359.m1 Manihot esculenta cassava3359.m1 I
cassava40050.m1 Manihot esculenta cassava40050.m1 I
Cucsa.255130 Cucumis sativus Cucsa.255130 I
Cucsa.321760 Cucumis sativus Cucsa.321760 I
e_gw1.14.264.1 Physcomitrella patens e_gw1.14.264.1 I
e_gw1.1.457.1 Physcomitrella patens e_gw1.1.457.1 I
e_gw1.186.49.1 Physcomitrella patens e_gw1.186.49.1 I
e_gw1.6.268.1 Physcomitrella patens e_gw1.6.268.1 I
mg013419m Mimulus guttatus mg013419m I
Bostr.13129s0367 Boechera stricta Bostr.13129s0367 I
Bostr.19424s0332 Boechera stricta Bostr.19424s0332 I
Bostr.25993s0539 Boechera stricta Bostr.25993s0539 I
Bostr.30275s0246 Boechera stricta Bostr.30275s0246 I
Cagra.2117s0055 Capsella grandiflora Cagra.2117s0055 I
Cagra.2636s0028 Capsella grandiflora Cagra.2636s0028 I
Cagra.3356s0074 Capsella grandiflora Cagra.3356s0074 I
Cagra.3462s0001 Capsella grandiflora Cagra.3462s0001 I
Carubv10002935m.g Capsella rubella Carubv10002935m.g I
Carubv10006881m.g Capsella rubella Carubv10006881m.g I
Carubv10016073m.g Capsella rubella Carubv10016073m.g I
Carubv10024766m.g Capsella rubella Carubv10024766m.g I
Ciclev10006961m.g Citrus clementina Ciclev10006961m.g I
evm.TU.supercontig_44.99 Carica papaya evm.TU.supercontig_44.99 I
gene08240-v1.0-hybrid Fragaria vesca gene08240-v1.0-hybrid I
Gorai.005G047800 Gossypium raimondii Gorai.005G047800 I
Gorai.006G247700 Gossypium raimondii Gorai.006G247700 I
Gorai.008G226800 Gossypium raimondii Gorai.008G226800 I
Gorai.012G106300 Gossypium raimondii Gorai.012G106300 I
Lus10000705.g Linum usitatissimum Lus10000705.g I
Lus10022206.g Linum usitatissimum Lus10022206.g I
Lus10024875.g Linum usitatissimum Lus10024875.g I
MDP0000225209 Malus domestica MDP0000225209 I
orange1.1g041626m.g Citrus sinensis orange1.1g041626m.g I
Pavir.Aa03593 Panicum virgatum Pavir.Aa03593 I
Pavir.Ab00024 Panicum virgatum Pavir.Ab00024 I
Pavir.Ab03315 Panicum virgatum Pavir.Ab03315 I
Pavir.Gb02516 Panicum virgatum Pavir.Gb02516 I
Pavir.J31403 Panicum virgatum Pavir.J31403 I
SapurV1A.0006s1030 Salix purpurea SapurV1A.0006s1030 I
SapurV1A.0007s0790 Salix purpurea SapurV1A.0007s0790 I
SapurV1A.0292s0200 Salix purpurea SapurV1A.0292s0200 I
SapurV1A.0378s0150 Salix purpurea SapurV1A.0378s0150 I
Thhalv10015420m.g Eutrema salsugineum Thhalv10015420m.g I
Thhalv10017870m.g Eutrema salsugineum Thhalv10017870m.g I
Thhalv10021992m.g Eutrema salsugineum Thhalv10021992m.g I
LjSGA_038753.2 Lotus japonicus LjSGA_038753.2 I
PDK_20s1313421g001 Phoenix dactylifera PDK_20s1313421g001 I
PDK_20s1360411g001 Phoenix dactylifera PDK_20s1360411g001 I
AMTR_s00022p00139230 Amborella trichopoda AMTR_s00022p00139230 N