Pavir.J36433 (Panicum virgatum)
TCP

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03634 (TCP) IPR005333 Pavir.J36433 T345025_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
LjT20A21.20.nc
M02519_2.00 		Lotus japonicus
GGGACCAY
RTGGTCCC		 PBM
Weirauch et al.(2014)
pTH9202 		0.922 0.536
TCP2
M02503_2.00 		Arabidopsis thaliana
NBGGKMCCVN
NBGGKMCCVN		 PBM
Weirauch et al.(2014)
pTH8198 		0.918 0.484
TCP2
M02508_2.00 		Arabidopsis lyrata
GGSMCCAC
GTGGKSCC		 PBM
Weirauch et al.(2014)
pTH9231 		0.918 0.484
TCP3
M02500_2.00 		Arabidopsis thaliana
NDGGMCCACN
NGTGGKCCHN		 PBM
Weirauch et al.(2014)
pTH8835 		0.903 0.333
TCP3
M07274_2.00 		Arabidopsis thaliana
DHNGGGACCACH
DGTGGTCCCNDH		 Dap-seq
OMalley et al.(2016)
TCP3_colamp_a 		0.903 0.333
TCP3
M07275_2.00 		Arabidopsis thaliana
DNBGGGACCACHN
NDGTGGTCCCVNH		 Dap-seq
OMalley et al.(2016)
TCP3_col 		0.903 0.333
OS01G0213800
M11398_2.00 		Oryza sativa Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$PCF5_01 		0.899 0.373
TCP4
M02514_2.00 		Arabidopsis lyrata
BKGGGACCAC
GTGGTCCCMV		 PBM
Weirauch et al.(2014)
pTH9313 		0.897 0.333
TCP4
M02501_2.00 		Arabidopsis thaliana
GGGACCAC
GTGGTCCC		 PBM
Weirauch et al.(2014)
pTH8084 		0.894 0.333
TCP5
M02505_2.00 		Arabidopsis thaliana
GGGACCAY
RTGGTCCC		 PBM
Weirauch et al.(2014)
pTH7523 		0.885 0.373
TCP5
M02510_2.00 		Arabidopsis lyrata
GGGACCAC
GTGGTCCC		 PBM
Weirauch et al.(2014)
pTH9233 		0.878 0.314
PK10344.1
M01313_2.00 		Cannabis sativa
GGGACCAC
GTGGTCCC		 PBM
Lambert et al.(2019)
pTH11464 		0.870 0.301
TCP13
M07283_2.00 		Arabidopsis thaliana
GTGGGGACCACWD
HWGTGGTCCCCAC		 Dap-seq
OMalley et al.(2016)
PTF1_col_a 		0.866 0.314
TCP13
M07284_2.00 		Arabidopsis thaliana
NNBGGGACCACHN
NDGTGGTCCCVNN		 Dap-seq
OMalley et al.(2016)
PTF1_colamp_a 		0.866 0.314
TCP17
M07290_2.00 		Arabidopsis thaliana
GTGGGGACCAC
GTGGTCCCCAC		 Dap-seq
OMalley et al.(2016)
TCP17_col_a 		0.834 0.294
TCP17
M07291_2.00 		Arabidopsis thaliana
RTGGGGACCAC
GTGGTCCCCAY		 Dap-seq
OMalley et al.(2016)
TCP17_colamp_a 		0.834 0.294
For this family, TFs with SR scores > 0.822 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.J36433.1.p TCP 9 163

Links

Other TCP family TFs
Other Panicum virgatum TFs

437 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
RBPJ Homo sapiens ENSG00000168214 D
Rbpj Mus musculus ENSMUSG00000039191 D
Su(H) Drosophila melanogaster FBgn0004837 D
CpipJ_CPIJ004183 Culex pipiens CpipJ_CPIJ004183 I
AAEL006419 Aedes aegypti AAEL006419 I
ACEP17167 Atta cephalotes ACEP17167 I
ACYPI001225 Acyrthosiphon pisum ACYPI001225 I
ACYPI009607 Acyrthosiphon pisum ACYPI009607 I
ADAC001896 Anopheles darlingi ADAC001896 I
AGAP008935 Anopheles gambiae AGAP008935 I
BGIBMGA003113 Bombyx mori BGIBMGA003113 I
CapteG179039 Capitella teleta CapteG179039 I
CGI_10018383 Crassostrea gigas CGI_10018383 I
CPIJ004183 Culex quinquefasciatus CPIJ004183 I
DAPPUDRAFT_98470 Daphnia pulex DAPPUDRAFT_98470 I
RBPJ Anolis carolinensis ENSACAG00000014578 I
ENSAMEG00000018082 Ailuropoda melanoleuca ENSAMEG00000018082 I
ENSAMXG00000010835 Astyanax mexicanus ENSAMXG00000010835 I
ENSAMXG00000011180 Astyanax mexicanus ENSAMXG00000011180 I
ENSAPLG00000007512 Anas platyrhynchos ENSAPLG00000007512 I
RBPJ Bos taurus ENSBTAG00000003602 I
RBPJ Canis familiaris ENSCAFG00000016387 I
RBPJ Choloepus hoffmanni ENSCHOG00000001582 I
RBPJ Callithrix jacchus ENSCJAG00000021033 I
RBPJ Cavia porcellus ENSCPOG00000007041 I
rbpja Danio rerio ENSDARG00000003398 I
rbpjb Danio rerio ENSDARG00000052091 I
RBPJ Dasypus novemcinctus ENSDNOG00000035383 I
Rbpj Dipodomys ordii ENSDORG00000006352 I
RBPJ Equus caballus ENSECAG00000019257 I
RBPJ Erinaceus europaeus ENSEEUG00000009686 I
ENSFALG00000009154 Ficedula albicollis ENSFALG00000009154 I
RBPJ Felis catus ENSFCAG00000030363 I
rbpja Gasterosteus aculeatus ENSGACG00000015888 I
RBPJ Gallus gallus ENSGALG00000014365 I
RBPJ Gorilla gorilla ENSGGOG00000004582 I
ENSGMOG00000004951 Gadus morhua ENSGMOG00000004951 I
ENSGMOG00000006156 Gadus morhua ENSGMOG00000006156 I
ENSLACG00000007296 Latimeria chalumnae ENSLACG00000007296 I
RBPJ Loxodonta africana ENSLAFG00000000410 I
ENSLOCG00000009731 Lepisosteus oculatus ENSLOCG00000009731 I
RBPJ Meleagris gallopavo ENSMGAG00000012418 I
RBPJ Myotis lucifugus ENSMLUG00000017187 I
RBPJ Macaca mulatta ENSMMUG00000015828 I
RBPJ Monodelphis domestica ENSMODG00000000129 I
ENSMPUG00000016715 Mustela putorius furo ENSMPUG00000016715 I
ENSNLEG00000016895 Nomascus leucogenys ENSNLEG00000016895 I
RBPJ Ornithorhynchus anatinus ENSOANG00000006699 I
ENSOARG00000008166 Ovis aries ENSOARG00000008166 I
RBPJ Oryctolagus cuniculus ENSOCUG00000013449 I
RBPJ Otolemur garnettii ENSOGAG00000007913 I
ENSONIG00000008873 Oreochromis niloticus ENSONIG00000008873 I
ENSONIG00000009281 Oreochromis niloticus ENSONIG00000009281 I
rbpja Oryzias latipes ENSORLG00000004882 I
ENSPANG00000021176 Papio anubis ENSPANG00000021176 I
ENSPFOG00000012004 Poecilia formosa ENSPFOG00000012004 I
ENSPPYG00000014652 Pongo abelii ENSPPYG00000014652 I
ENSPSIG00000016822 Pelodiscus sinensis ENSPSIG00000016822 I
RBPJ Pan troglodytes ENSPTRG00000015968 I
RBPJ Pteropus vampyrus ENSPVAG00000014199 I
Rbpj Rattus norvegicus ENSRNOG00000007797 I
Rbpj Rattus norvegicus ENSRNOG00000046327 I
RBPJ Sorex araneus ENSSARG00000001169 I
ENSSHAG00000003329 Sarcophilus harrisii ENSSHAG00000003329 I
RBPJ Sus scrofa ENSSSCG00000022155 I
ENSSTOG00000004547 Ictidomys tridecemlineatus ENSSTOG00000004547 I
RBPJ Tupaia belangeri ENSTBEG00000002676 I
RBPJ Taeniopygia guttata ENSTGUG00000009245 I
RBPJ Tetraodon nigroviridis ENSTNIG00000012994 I
RBPJ Takifugu rubripes ENSTRUG00000014798 I
ENSTSYG00000001894 Tarsius syrichta ENSTSYG00000001894 I
RBPJ Tursiops truncatus ENSTTRG00000009022 I
ENSVPAG00000005031 Vicugna pacos ENSVPAG00000005031 I
ENSXMAG00000009877 Xiphophorus maculatus ENSXMAG00000009877 I
ENSXMAG00000012207 Xiphophorus maculatus ENSXMAG00000012207 I
Su(H) Drosophila simulans FBgn0027417 I
GF14905 Drosophila ananassae FBgn0091930 I
GG25142 Drosophila erecta FBgn0117267 I
GH10915 Drosophila grimshawi FBgn0118396 I
GI13259 Drosophila mojavensis FBgn0136016 I
GL26026 Drosophila persimilis FBgn0163608 I
GM15894 Drosophila sechellia FBgn0170810 I
GJ11880 Drosophila virilis FBgn0199134 I
GE20814 Drosophila yakuba FBgn0238107 I
GA25242 Drosophila pseudoobscura FBgn0246623 I
GA25243 Drosophila pseudoobscura FBgn0246624 I
GB45655 Apis mellifera GB45655 I
HMEL017244 Heliconius melpomene HMEL017244 I
ISCW010197 Ixodes scapularis ISCW010197 I
KGM_08407 Danaus plexippus KGM_08407 I
L798_15068 Zootermopsis nevadensis L798_15068 I
LotgiG159505 Lottia gigantea LotgiG159505 I
MESCA005881 Megaselia scalaris MESCA005881 I
NV17858 Nasonia vitripennis NV17858 I
NV17967 Nasonia vitripennis NV17967 I
PHUM462870 Pediculus humanus PHUM462870 I
RPRC014254 Rhodnius prolixus RPRC014254 I
SINV15808 Solenopsis invicta SINV15808 I
SMAR001432 Strigamia maritima SMAR001432 I
TC014468 Tribolium castaneum TC014468 I
tetur04g02700 Tetranychus urticae tetur04g02700 I
tetur04g02730 Tetranychus urticae tetur04g02730 I
tetur11g00180 Tetranychus urticae tetur11g00180 I
YQE_03219 Dendroctonus ponderosae YQE_03219 I
Aan_R011115 Calypte anna Aan_R011115 I
Afo_R009248 Aptenodytes forsteri Afo_R009248 I
Alligator_sinensis_CCG006987.1 Alligator sinensis Alligator_sinensis_CCG006987.1 I
Brh_R001357 Buceros rhinoceros Brh_R001357 I
Cflo_01916--XP_397309.1_APIME Camponotus floridanus Cflo_01916--XP_397309.1_APIME I
Cmyd_10010997 Chelonia mydas Cmyd_10010997 I
ENSBTAP00000004696-D1 Bos grunniens ENSBTAP00000004696-D1 I
ENSP00000354528 Macaca fascicularis ENSP00000354528 I
Gfo_R010339 Geospiza fortis Gfo_R010339 I
Hsal_09918--XP_397309.1_APIME Harpegnathos saltator Hsal_09918--XP_397309.1_APIME I
Myotis_brandtii_RBPJ_10027377 Myotis brandtii Myotis_brandtii_RBPJ_10027377 I
Ogr02745 Ophisaurus gracilis Ogr02745 I
Pvit_10584 Pogona vitticeps Pvit_10584 I
Tal_R001466 Tyto alba Tal_R001466 I
fgenesh2_pg.scaffold_60000013 Branchiostoma floridae fgenesh2_pg.scaffold_60000013 I
fgenesh2_pg.scaffold_82000019 Branchiostoma floridae fgenesh2_pg.scaffold_82000019 I
Ocbimv22031643m.g Octopus bimaculoides Ocbimv22031643m.g I
Sakowv30027441m.g Saccoglossus kowalevskii Sakowv30027441m.g I
AAB05479 Xenopus laevis AAB05479 I
CLEC005205 Cimex lectularius CLEC005205 I
HHAL001644-PA Halyomorpha halys HHAL001644-PA I
LCUP003485 Lucilia cuprina LCUP003485 I
LDEC018359 Leptinotarsa decemlineata LDEC018359 I
Sjc_0108400 Schistosoma japonicum Sjc_0108400 I
rbpj Xenopus tropicalis XB-GENE-490756 I
rbpj.S Xenopus laevis XB-GENE-865998 I
AALB007981 Anopheles albimanus AALB007981 I
AARA009493 Anopheles arabiensis AARA009493 I
AATE009298 Anopheles atroparvus AATE009298 I
ACOM040639 Anopheles coluzzii ACOM040639 I
ACUA014515 Anopheles culicifacies ACUA014515 I
AEPI005106 Anopheles epiroticus AEPI005106 I
AFAF012186 Anopheles farauti AFAF012186 I
AFUN007280 Anopheles funestus AFUN007280 I
AMAM009373 Anopheles maculatus AMAM009373 I
AMEC017285 Anopheles melas AMEC017285 I
AMEM004324 Anopheles merus AMEM004324 I
AMIN005880 Anopheles minimus AMIN005880 I
AQUA011533 Anopheles quadriannulatus AQUA011533 I
ASIS021327 Anopheles sinensis ASIS021327 I
ASTEI01929 Anopheles stephensi ASTEI01929 I
LLOJ000759 Lutzomyia longipalpis LLOJ000759 I
MDOA002342 Musca domestica MDOA002342 I
PPAI000792 Phlebotomus papatasi PPAI000792 I
augustus_masked-nMf.1.1.scaf33168-processed-gene-0.0 Meloidogyne floridensis augustus_masked-nMf.1.1.scaf33168-processed-gene-0.0 I
BTMF_0000429201 Brugia timori BTMF_0000429201 I
D915_08967 Fasciola hepatica D915_08967 I
GPLIN_001569000 Globodera pallida GPLIN_001569000 I
NECAME_17145 Necator americanus NECAME_17145 I
scaffold595-EXSNAP2012.9 Pristionchus exspectatus scaffold595-EXSNAP2012.9 I
SCUD_0000326701 Schistosoma curassoni SCUD_0000326701 I
SMRZ_0000802101 Schistosoma margrebowiei SMRZ_0000802101 I
SMTD_0001089601 Schistosoma mattheei SMTD_0001089601 I
TRE_0000568701 Trichobilharzia regenti TRE_0000568701 I
WBGene00242124 Onchocerca volvulus WBGene00242124 N
nDi.2.2.2.g05496 Dirofilaria immitis nDi.2.2.2.g05496 N
nOo.2.0.1.g00014 Onchocerca ochengi nOo.2.0.1.g00014 N
TCLT_0000154801 Thelazia callipaeda TCLT_0000154801 N