CIS-BP Database: Catalog of Inferred Sequence Binding Preferences

TF Information

Pavir.J27189 *(Panicum virgatum)* WRKY
Pfam ID	Interpro ID	Gene ID	CIS-BP ID	Sequence source
PF03106 (WRKY)	IPR003657	Pavir.J27189	T356849_2.00	JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
No direct experiments
Motifs from related TFs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
WRKY21 M02553_2.00	Arabidopsis thaliana	NNRGTCAAMN	NKTTGACYNN	PBM Weirauch et al.(2014) pTH7422	0.879	0.712
WRKY21 M07389_2.00	Arabidopsis thaliana	HAAAGTCAACNNH	DNNGTTGACTTTD	Dap-seq OMalley et al.(2016) WRKY21_colamp_a	0.879	0.712
WRKY21 M07390_2.00	Arabidopsis thaliana	HAAAGTCAACK	MGTTGACTTTD	Dap-seq OMalley et al.(2016) WRKY21_col	0.879	0.712
WRKY22 M02557_2.00	Arabidopsis thaliana	NNNKTMHDNN	NNHDKAMNNN	PBM Weirauch et al.(2014) pTH7320	0.872	0.763
WRKY22 M07400_2.00	Arabidopsis thaliana	AAAAGTCAACKNH	DNMGTTGACTTTT	Dap-seq OMalley et al.(2016) WRKY22_colamp_a	0.872	0.763
WRKY22 M07401_2.00	Arabidopsis thaliana	NAAAGTCAACKNH	DNMGTTGACTTTN	Dap-seq OMalley et al.(2016) WRKY22_col	0.872	0.763
WRKY65 M07372_2.00	Arabidopsis thaliana	NWWAGTCAACG	CGTTGACTWWN	Dap-seq OMalley et al.(2016) WRKY65_col_a	0.870	0.729
WRKY65 M07373_2.00	Arabidopsis thaliana	NAAAGTCAACGN	NCGTTGACTTTN	Dap-seq OMalley et al.(2016) WRKY65_colamp_a	0.870	0.729
WRKY14 M00731_2.00	Arabidopsis thaliana	NRGTCAAMNN	NNKTTGACYN	PBM Chang et al.(2013) pTH7570	0.865	0.712
WRKY14 M07375_2.00	Arabidopsis thaliana	NAAAGTCAACGNN	NNCGTTGACTTTN	Dap-seq OMalley et al.(2016) WRKY14_col_a	0.865	0.712
WRKY14 M07376_2.00	Arabidopsis thaliana	NAAAGTCAACGNH	DNCGTTGACTTTN	Dap-seq OMalley et al.(2016) WRKY14_colamp_a	0.865	0.712
WRKY27 M02566_2.00	Arabidopsis thaliana	NNGTCHDNN	NNHDGACNN	PBM Weirauch et al.(2014) pTH8188	0.865	0.729
WRKY27 M07430_2.00	Arabidopsis thaliana	MAAAGTCAACKNH	DNMGTTGACTTTK	Dap-seq OMalley et al.(2016) WRKY27_col_a	0.865	0.729
WRKY27 M07431_2.00	Arabidopsis thaliana	HAAAGTCAACKNH	DNMGTTGACTTTD	Dap-seq OMalley et al.(2016) WRKY27_colamp_a	0.865	0.729
WRKY11 M02559_2.00	Arabidopsis thaliana	NDGTCAAHNN	NNDTTGACHN	PBM Weirauch et al.(2014) pTH8091	0.853	0.712
WRKY11 M07415_2.00	Arabidopsis thaliana	NHAAAGTCAACBNH	DNVGTTGACTTTDN	Dap-seq OMalley et al.(2016) WRKY11_col_a	0.853	0.712
WRKY11 M11464_2.00	Arabidopsis thaliana	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$WRKY11_Q2	0.853	0.712
WRKY15 M02549_2.00	Arabidopsis thaliana	NRGTCAAMNN	NNKTTGACYN	PBM Weirauch et al.(2014) pTH7602	0.850	0.678
WRKY15 M07383_2.00	Arabidopsis thaliana	AAAAGTCAACKN	NMGTTGACTTTT	Dap-seq OMalley et al.(2016) WRKY15_colamp_a	0.850	0.678
WRKY15 M07384_2.00	Arabidopsis thaliana	NWAAGTCAACB	VGTTGACTTWN	Dap-seq OMalley et al.(2016) WRKY15_col_b	0.850	0.678
WRKY29 M02558_2.00	Arabidopsis thaliana	NNNGTCHDNN	NNHDGACNNN	PBM Weirauch et al.(2014) pTH9604	0.848	0.644
WRKY29 M07410_2.00	Arabidopsis thaliana	HAAAGTCAACK	MGTTGACTTTD	Dap-seq OMalley et al.(2016) WRKY29_col_a	0.848	0.644
WRKY29 M07411_2.00	Arabidopsis thaliana	HWWAGTCAAMDNN	NNHKTTGACTWWD	Dap-seq OMalley et al.(2016) WRKY29_colamp_a	0.848	0.644
WRKY7 M07412_2.00	Arabidopsis thaliana	NNDDDNNNNMAAAGTCAACGV	BCGTTGACTTTKNNNNHHHNN	Dap-seq OMalley et al.(2016) WRKY7_colamp_a	0.847	0.661
WRKY7 M07413_2.00	Arabidopsis thaliana	NAAAAGTCAACKNN	NNMGTTGACTTTTN	Dap-seq OMalley et al.(2016) WRKY7_col	0.847	0.661
WRKY17 M02550_2.00	Arabidopsis thaliana	NNDGTCAAHN	NDTTGACHNN	PBM Weirauch et al.(2014) pTH8088	0.847	0.678
WRKY17 M07385_2.00	Arabidopsis thaliana	NHAAAGTCAACRNN	NNYGTTGACTTTDN	Dap-seq OMalley et al.(2016) WRKY17_col_a	0.847	0.678
WRKY17 M07386_2.00	Arabidopsis thaliana	NMAAAGTCAACGN	NCGTTGACTTTKN	Dap-seq OMalley et al.(2016) WRKY17_colamp_a	0.847	0.678
Q40828_PETCR M11467_2.00	Petroselinum crispum	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$WRKY_Q2	0.847	0.678
WRKY28 M07406_2.00	Arabidopsis thaliana	HAAAGTCAAMNNH	DNNKTTGACTTTD	Dap-seq OMalley et al.(2016) WRKY28_col_a	0.828	0.559
WRKY28 M07407_2.00	Arabidopsis thaliana	VAAAGTCAAMG	CKTTGACTTTB	Dap-seq OMalley et al.(2016) WRKY28_colamp_a	0.828	0.559
WRKY8 M02564_2.00	Arabidopsis thaliana	NRGTCAAHN	NDTTGACYN	PBM Weirauch et al.(2014) pTH7554	0.828	0.542
WRKY8 M07428_2.00	Arabidopsis thaliana	NAAAAGTCAACRNHW	WDNYGTTGACTTTTN	Dap-seq OMalley et al.(2016) WRKY8_colamp_a	0.828	0.542
WRKY8 M07429_2.00	Arabidopsis thaliana	NNVAAAGTCAACRNH	DNYGTTGACTTTBNN	Dap-seq OMalley et al.(2016) WRKY8_col	0.828	0.542
WRKY71 M07374_2.00	Arabidopsis thaliana	HAAAGTCAAMN	NKTTGACTTTD	Dap-seq OMalley et al.(2016) WRKY71_col_a	0.828	0.559
WRKY48 M02565_2.00	Arabidopsis thaliana	NNVGTCADNN	NNHTGACBNN	PBM Weirauch et al.(2014) pTH7552	0.828	0.559
WRKY23 M02556_2.00	Arabidopsis thaliana	RGTCAACG	CGTTGACY	PBM Weirauch et al.(2014) pTH7387	0.814	0.525
WRKY23 M01089_2.00	Arabidopsis thaliana	NRGTCAAM	KTTGACYN	PBM Sullivan et al.(2014) pTH7671	0.814	0.525
ZAP1 M00982_2.00	Arabidopsis thaliana	NRGTCAAN	NTTGACYN	PBM Lindemose et al.(2014) WRKY1	0.812	0.559
WRKY57 M02547_2.00	Arabidopsis thaliana	NNRGTCAAHN	NDTTGACYNN	PBM Weirauch et al.(2014) pTH7917	0.811	0.525
For this family, TFs with SR scores > 0.808* will likely have a similar motif*

DNA Binding Domains

Protein ID	Domain	From	To	Sequence
Pavir.J27189.1.p	WRKY	136	195	PDPWAWRKYGQKPIKGSPYPRGYYRCSTDNDCKARKQVERCRDDPATLIVTYTGGDHSHP

Links
Other WRKY family TFs
Other *Panicum virgatum* TFs

1507 Related TFs

Name	Species	Gene ID	Motif Evidence	SR Score	Action
PK07924.1	Cannabis sativa	PK07924.1	D	0.000
29929.m004752	Ricinus communis	29929.m004752	I	0.000
Ciclev10031052m.g	Citrus clementina	Ciclev10031052m.g	I	0.000
Carubv10020133m.g	Capsella rubella	Carubv10020133m.g	I	0.000
Cagra.2261s0012	Capsella grandiflora	Cagra.2261s0012	I	0.000
Bostr.26959s0139	Boechera stricta	Bostr.26959s0139	I	0.000
Aquca_056_00105	Aquilegia coerulea	Aquca_056_00105	I	0.000
mgf000016m	Mimulus guttatus	mgf000016m	I	0.000
Cucsa.394720	Cucumis sativus	Cucsa.394720	I	0.000
cassava32312.m1	Manihot esculenta	cassava32312.m1	I	0.000
cassava29171.valid.m1	Manihot esculenta	cassava29171.valid.m1	I	0.000
cassava13981.valid.m1	Manihot esculenta	cassava13981.valid.m1	I	0.000
Eucgr.H04694	Eucalyptus grandis	Eucgr.H04694	I	0.000
Pm006838	Prunus mume	Pm006838	I	0.000
Cla023064	Citrullus lanatus	Cla023064	I	0.000
Ca_11309	Cicer arietinum	Ca_11309	I	0.000
VIT_17s0000g10100	Vitis vinifera	VIT_17s0000g10100	I	0.000
ARR11	Vitis vinifera	VIT_01s0010g02230	I	0.000
Traes_3DL_D82CA7827	Triticum aestivum	Traes_3DL_D82CA7827	I	0.000
TRAES3BF107400040CFD_g	Triticum aestivum	TRAES3BF107400040CFD_g	I	0.000
TRAES3BF094200030CFD_g	Triticum aestivum	TRAES3BF094200030CFD_g	I	0.000
orange1.1g027234m.g	Citrus sinensis	orange1.1g027234m.g	I	0.000
PDK_20s1379531g004	Phoenix dactylifera	PDK_20s1379531g004	I	0.000
LjSGA_022114.1	Lotus japonicus	LjSGA_022114.1	I	0.000
Thhalv10018396m.g	Eutrema salsugineum	Thhalv10018396m.g	I	0.000
Thhalv10000098m.g	Eutrema salsugineum	Thhalv10000098m.g	I	0.000
SapurV1A.0629s0180	Salix purpurea	SapurV1A.0629s0180	I	0.000
SapurV1A.0206s0280	Salix purpurea	SapurV1A.0206s0280	I	0.000
SapurV1A.0152s0010	Salix purpurea	SapurV1A.0152s0010	I	0.000
Pavir.J23046	Panicum virgatum	Pavir.J23046	I	0.000
Pavir.Ea03527	Panicum virgatum	Pavir.Ea03527	I	0.000
Eucgr.H04693	Eucalyptus grandis	Eucgr.H04693	I	0.000
orange1.1g007940m.g	Citrus sinensis	orange1.1g007940m.g	I	0.000
MDP0000320381	Malus domestica	MDP0000320381	I	0.000
MDP0000307383	Malus domestica	MDP0000307383	I	0.000
MDP0000305167	Malus domestica	MDP0000305167	I	0.000
Lus10011389.g	Linum usitatissimum	Lus10011389.g	I	0.000
Lus10006446.g	Linum usitatissimum	Lus10006446.g	I	0.000
Gorai.005G173300	Gossypium raimondii	Gorai.005G173300	I	0.000
evm.TU.supercontig_86.17	Carica papaya	evm.TU.supercontig_86.17	I	0.000
Traes_3B_D9F27151E	Triticum aestivum	Traes_3B_D9F27151E	I	0.000
GLYMA08G10650	Glycine max	GLYMA08G10650	I	0.000
MTR_8g079940	Medicago truncatula	MTR_8g079940	I	0.000
MTR_3g086100	Medicago truncatula	MTR_3g086100	I	0.000
MLOC_23250	Hordeum vulgare	MLOC_23250	I	0.000
LPERR01G35510	Leersia perrieri	LPERR01G35510	I	0.000
GSMUA_Achr8G32070_001	Musa acuminata	GSMUA_Achr8G32070_001	I	0.000
GSMUA_Achr3G14630_001	Musa acuminata	GSMUA_Achr3G14630_001	I	0.000
GRMZM2G177220	Zea mays	GRMZM2G177220	I	0.000
GRMZM2G100318	Zea mays	GRMZM2G100318	I	0.000
GLYMA18G01434	Glycine max	GLYMA18G01434	I	0.000
GLYMA11G37480	Glycine max	GLYMA11G37480	I	0.000
OB01G49660	Oryza brachyantha	OB01G49660	I	0.000
GLYMA05G27670	Glycine max	GLYMA05G27670	I	0.000
F775_27736	Aegilops tauschii	F775_27736	I	0.000
BRADI2G58020	Brachypodium distachyon	BRADI2G58020	I	0.000
Bra032035	Brassica rapa	Bra032035	I	0.000
Bra004245	Brassica rapa	Bra004245	I	0.000
Bra004076	Brassica rapa	Bra004076	I	0.000
Bo6g105120	Brassica oleracea	Bo6g105120	I	0.000
Bo6g098710	Brassica oleracea	Bo6g098710	I	0.000
Bo4g157430	Brassica oleracea	Bo4g157430	I	0.000
PGSC0003DMG400011980	Solanum tuberosum	PGSC0003DMG400011980	I	0.000
Traes_3AL_9D2735F60	Triticum aestivum	Traes_3AL_9D2735F60	I	0.000
TCM_010701	Theobroma cacao	TCM_010701	I	0.000
Solyc05g014260.2	Solanum lycopersicum	Solyc05g014260.2	I	0.000
Si000815m.g	Setaria italica	Si000815m.g	I	0.000
ARR11	Arabidopsis lyrata	scaffold_201596.1	I	0.000
Sb03g043080	Sorghum bicolor	Sb03g043080	I	0.000
PRUPE_ppa002679mg	Prunus persica	PRUPE_ppa002679mg	I	0.000
POPTR_0010s06290	Populus trichocarpa	POPTR_0010s06290	I	0.000
POPTR_0008s18130	Populus trichocarpa	POPTR_0008s18130	I	0.000
BGIOSGA000304	Oryza indica	BGIOSGA000304	I	0.000
RR26	Oryza sativa	OS01G0904700	I	0.000
ORUFI01G44260	Oryza rufipogon	ORUFI01G44260	I	0.000
ORGLA01G0348700	Oryza glaberrima	ORGLA01G0348700	I	0.000
OPUNC01G39740	Oryza punctata	OPUNC01G39740	I	0.000
ONIVA01G45980	Oryza nivara	ONIVA01G45980	I	0.000
OMERI01G37950	Oryza meridionalis	OMERI01G37950	I	0.000
OLONG_004141	Oryza longistaminata	OLONG_004141	I	0.000
OGLUM01G45120	Oryza glumaepatula	OGLUM01G45120	I	0.000
OBART01G40940	Oryza barthii	OBART01G40940	I	0.000

Pavir.J27189 (Panicum virgatum) WRKY

TF Information

Directly determined binding motifs

Motifs from related TFs

DNA Binding Domains

Links

1507 Related TFs

Pavir.J27189 **(Panicum virgatum)
WRKY**